Wall clock time and date at job start Mon Mar 30 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47301 * 2 1 4 4 C 1.34777 * 120.00191 * 269.99973 * 3 2 1 5 5 O 1.21286 * 120.00138 * 184.82944 * 4 3 2 6 6 C 1.50702 * 119.99586 * 4.83086 * 4 3 2 7 7 C 1.53002 * 109.46805 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47224 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47169 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00000 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99667 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00595 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99742 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46848 * 59.99960 * 13 11 9 15 15 H 1.48499 * 109.47208 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47224 * 300.00230 * 13 11 9 17 17 C 1.39926 * 119.99904 * 90.00067 * 3 2 1 18 18 C 1.38866 * 120.07166 * 247.43170 * 17 3 2 19 19 C 1.38113 * 119.93041 * 179.70074 * 18 17 3 20 20 C 1.38282 * 120.06855 * 0.56986 * 19 18 17 21 21 C 1.38278 * 120.14208 * 359.72525 * 20 19 18 22 22 C 1.38114 * 120.06735 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.47093 * 59.99927 * 1 2 3 24 24 H 1.09005 * 109.47176 * 300.00284 * 1 2 3 25 25 H 1.09002 * 109.47459 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47093 * 120.00073 * 2 1 3 27 27 H 1.08996 * 109.47065 * 239.99800 * 2 1 3 28 28 H 1.08997 * 109.47136 * 299.99731 * 6 4 3 29 29 H 1.09001 * 109.47152 * 60.00470 * 6 4 3 30 30 H 1.09007 * 109.47163 * 300.00380 * 7 6 4 31 31 H 1.09005 * 109.46889 * 59.99630 * 7 6 4 32 32 H 1.08997 * 109.47130 * 300.00116 * 8 7 6 33 33 H 1.09009 * 109.46831 * 60.00298 * 8 7 6 34 34 H 0.96999 * 120.00269 * 180.02562 * 12 11 9 35 35 H 1.08006 * 120.03408 * 359.97263 * 18 17 3 36 36 H 1.08010 * 119.96640 * 180.29563 * 19 18 17 37 37 H 1.08005 * 119.92927 * 179.70117 * 20 19 18 38 38 H 1.08000 * 119.96543 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.03227 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.7296 3.1275 -1.1690 6 6 1.8895 1.3465 -2.4700 7 6 2.2423 2.2755 -3.6333 8 6 1.8840 1.5951 -4.9560 9 6 2.2309 2.5104 -6.1019 10 1 2.6640 3.4802 -5.9063 11 6 1.9954 2.1097 -7.3999 12 7 1.4675 0.9289 -7.6381 13 14 2.4260 3.2439 -8.8203 14 1 3.8813 3.5391 -8.7944 15 1 2.0782 2.5836 -10.1041 16 1 1.6618 4.5106 -8.6916 17 6 2.2516 2.0408 1.2118 18 6 1.4545 3.1153 1.5838 19 6 1.6833 3.7603 2.7835 20 6 2.7124 3.3446 3.6083 21 6 3.5118 2.2789 3.2379 22 6 3.2842 1.6258 2.0424 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.4503 0.4167 -2.5641 29 1 0.8213 1.1303 -2.4892 30 1 1.6812 3.2053 -3.5389 31 1 3.3104 2.4923 -3.6142 32 1 2.4454 0.6656 -5.0502 33 1 0.8159 1.3781 -4.9754 34 1 1.3022 0.6469 -8.5513 35 1 0.6536 3.4435 0.9378 36 1 1.0607 4.5931 3.0756 37 1 2.8924 3.8537 4.5437 38 1 4.3150 1.9569 3.8841 39 1 3.9092 0.7937 1.7535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593949226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:10 Heat of formation + Delta-G solvation = -24.831341 kcal Electronic energy + Delta-G solvation = -18986.223802 eV Core-core repulsion = 16086.210885 eV Total energy + Delta-G solvation = -2900.012917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53681 -38.48845 -35.92103 -34.24912 -32.17963 -31.31074 -31.05820 -29.35953 -27.68214 -24.28363 -23.67975 -22.57133 -22.19989 -20.26727 -19.08810 -17.46335 -16.77271 -16.26600 -16.00942 -15.76687 -14.76319 -14.58104 -14.41304 -13.88596 -13.68742 -13.54818 -13.35425 -12.81672 -12.60388 -12.39878 -12.10756 -11.77271 -11.64250 -11.49785 -11.32627 -11.12140 -10.75584 -10.59602 -10.53954 -9.71248 -9.66250 -9.44310 -9.24219 -9.06323 -9.01668 -8.43104 -8.31016 -5.96924 -3.98368 1.15956 1.27454 2.82832 2.94552 3.37384 3.40638 3.44686 3.63200 4.49811 4.74339 4.79224 4.82077 4.93590 4.97762 5.06442 5.23710 5.28790 5.39097 5.39699 5.45290 5.61505 5.66013 5.69756 5.76978 5.88071 6.01362 6.21004 6.26513 6.36932 6.39164 6.53791 6.71986 6.91490 7.01524 7.15881 7.35743 7.71044 7.83856 8.03536 8.37498 8.47650 9.08404 9.65562 11.14542 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.003695 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.165245 B = 7576.133546 C = 8025.543069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.584 5.584 4 C 0.516 3.484 5 O -0.522 6.522 6 C -0.135 4.135 7 C -0.096 4.096 8 C 0.022 3.978 9 C -0.519 4.519 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.152 3.848 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.124 4.124 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -2.607 22.734 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.316 5.316 4 C 0.307 3.693 5 O -0.395 6.395 6 C -0.175 4.175 7 C -0.134 4.134 8 C -0.015 4.015 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.538 5.538 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C 0.062 3.938 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.145 4.145 21 C -0.130 4.130 22 C -0.144 4.144 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.618 -2.131 22.522 22.631 hybrid contribution 0.150 0.456 -0.813 0.945 sum -0.468 -1.674 21.708 21.778 Atomic orbital electron populations 1.22230 0.95505 1.02589 1.02848 1.21666 0.94873 0.81335 1.03628 1.45835 1.67156 1.14682 1.03928 1.21449 0.76719 0.86065 0.85111 1.90701 1.41873 1.19895 1.87069 1.21920 1.03070 1.01026 0.91468 1.21481 1.01110 0.97396 0.93440 1.19117 0.96718 0.95772 0.89922 1.21235 1.41035 1.02364 0.91075 0.92632 1.25010 0.95291 0.95199 0.98948 1.69949 1.44285 1.19252 1.20278 0.86653 0.78966 0.80924 0.81451 1.20222 1.21328 1.20220 1.17632 0.94798 0.94540 0.86875 1.21282 0.99142 0.96031 0.96443 1.21039 0.98122 0.99605 0.94105 1.21148 0.96036 0.97380 0.99944 1.20997 0.99571 0.96168 0.96306 1.21238 0.96553 1.01376 0.95244 0.91693 0.92442 0.91171 0.90401 0.89299 0.89237 0.89103 0.92692 0.92681 0.96594 0.96597 0.93011 0.86035 0.85801 0.86020 0.85829 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.23 37.16 0.38 -1.21 16 2 C 0.11 1.06 5.84 -4.04 -0.02 1.04 16 3 N -0.58 -7.90 2.52 -113.46 -0.29 -8.19 16 4 C 0.52 8.82 7.52 -10.98 -0.08 8.74 16 5 O -0.52 -11.00 15.73 5.55 0.09 -10.91 16 6 C -0.14 -2.29 4.37 -27.88 -0.12 -2.41 16 7 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 10 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 13 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 C 0.15 2.03 4.76 -83.70 -0.40 1.63 16 18 C -0.11 -1.42 9.53 -39.40 -0.38 -1.79 16 19 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 20 C -0.13 -1.22 10.04 -39.55 -0.40 -1.62 16 21 C -0.11 -1.11 10.04 -39.61 -0.40 -1.50 16 22 C -0.12 -1.44 9.68 -39.39 -0.38 -1.82 16 23 H 0.06 0.67 6.95 -51.93 -0.36 0.31 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 27 H 0.09 0.83 6.47 -51.93 -0.34 0.49 16 28 H 0.09 1.36 7.26 -51.93 -0.38 0.98 16 29 H 0.09 1.40 6.95 -51.93 -0.36 1.04 16 30 H 0.05 1.25 8.10 -51.92 -0.42 0.83 16 31 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -33.75 329.03 -8.42 -42.17 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -6.03 Total: -2.53 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.86 Total: -16.20 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.45 Total: -34.58 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.75 -8.42 -42.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593949226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.334 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds