Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47301 * 2 1 4 4 C 1.34777 * 120.00191 * 269.99973 * 3 2 1 5 5 O 1.21286 * 120.00138 * 184.82944 * 4 3 2 6 6 C 1.50702 * 119.99586 * 4.83086 * 4 3 2 7 7 C 1.53002 * 109.46805 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47224 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47169 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00000 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99667 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00595 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99742 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46848 * 59.99960 * 13 11 9 15 15 H 1.48499 * 109.47208 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47224 * 300.00230 * 13 11 9 17 17 C 1.39926 * 119.99904 * 90.00067 * 3 2 1 18 18 C 1.38866 * 120.07166 * 247.43170 * 17 3 2 19 19 C 1.38113 * 119.93041 * 179.70074 * 18 17 3 20 20 C 1.38282 * 120.06855 * 0.56986 * 19 18 17 21 21 C 1.38278 * 120.14208 * 359.72525 * 20 19 18 22 22 C 1.38114 * 120.06735 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.47093 * 59.99927 * 1 2 3 24 24 H 1.09005 * 109.47176 * 300.00284 * 1 2 3 25 25 H 1.09002 * 109.47459 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47093 * 120.00073 * 2 1 3 27 27 H 1.08996 * 109.47065 * 239.99800 * 2 1 3 28 28 H 1.08997 * 109.47136 * 299.99731 * 6 4 3 29 29 H 1.09001 * 109.47152 * 60.00470 * 6 4 3 30 30 H 1.09007 * 109.47163 * 300.00380 * 7 6 4 31 31 H 1.09005 * 109.46889 * 59.99630 * 7 6 4 32 32 H 1.08997 * 109.47130 * 300.00116 * 8 7 6 33 33 H 1.09009 * 109.46831 * 60.00298 * 8 7 6 34 34 H 0.96999 * 120.00269 * 180.02562 * 12 11 9 35 35 H 1.08006 * 120.03408 * 359.97263 * 18 17 3 36 36 H 1.08010 * 119.96640 * 180.29563 * 19 18 17 37 37 H 1.08005 * 119.92927 * 179.70117 * 20 19 18 38 38 H 1.08000 * 119.96543 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.03227 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.7296 3.1275 -1.1690 6 6 1.8895 1.3465 -2.4700 7 6 2.2423 2.2755 -3.6333 8 6 1.8840 1.5951 -4.9560 9 6 2.2309 2.5104 -6.1019 10 1 2.6640 3.4802 -5.9063 11 6 1.9954 2.1097 -7.3999 12 7 1.4675 0.9289 -7.6381 13 14 2.4260 3.2439 -8.8203 14 1 3.8813 3.5391 -8.7944 15 1 2.0782 2.5836 -10.1041 16 1 1.6618 4.5106 -8.6916 17 6 2.2516 2.0408 1.2118 18 6 1.4545 3.1153 1.5838 19 6 1.6833 3.7603 2.7835 20 6 2.7124 3.3446 3.6083 21 6 3.5118 2.2789 3.2379 22 6 3.2842 1.6258 2.0424 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.4503 0.4167 -2.5641 29 1 0.8213 1.1303 -2.4892 30 1 1.6812 3.2053 -3.5389 31 1 3.3104 2.4923 -3.6142 32 1 2.4454 0.6656 -5.0502 33 1 0.8159 1.3781 -4.9754 34 1 1.3022 0.6469 -8.5513 35 1 0.6536 3.4435 0.9378 36 1 1.0607 4.5931 3.0756 37 1 2.8924 3.8537 4.5437 38 1 4.3150 1.9569 3.8841 39 1 3.9092 0.7937 1.7535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593949226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = -43.475317 kcal Electronic energy + Delta-G solvation = -18987.032266 eV Core-core repulsion = 16086.210885 eV Total energy + Delta-G solvation = -2900.821381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65276 -39.52852 -37.01546 -36.17655 -34.09282 -32.28845 -31.88877 -30.54706 -29.30838 -26.07818 -24.56535 -23.68450 -23.24335 -21.94527 -20.29296 -18.56033 -18.47559 -17.75287 -17.10267 -16.89937 -16.48144 -15.99007 -15.50314 -14.97910 -14.83633 -14.66659 -14.35393 -14.27173 -13.83418 -13.68502 -13.58074 -13.16674 -12.99114 -12.67721 -12.52382 -12.41962 -12.34040 -12.14111 -12.04967 -11.55279 -11.47441 -11.27811 -10.86946 -10.54579 -10.34445 -9.90458 -9.39402 -8.20619 -6.30696 0.28811 0.43217 1.39227 1.42098 1.50220 1.52205 1.88412 2.41323 2.78842 3.12261 3.63636 3.97250 3.99804 4.04441 4.13333 4.15354 4.24321 4.31336 4.47690 4.53172 4.54974 4.64055 4.69235 4.88872 4.96426 4.97715 5.04999 5.06956 5.16543 5.32702 5.41124 5.49934 5.52064 5.55877 5.66775 5.73463 5.85015 6.09442 6.20900 6.28537 6.83988 7.11459 7.37849 8.90693 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.003695 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.165245 B = 7576.133546 C = 8025.543069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.572 5.572 4 C 0.517 3.483 5 O -0.572 6.572 6 C -0.125 4.125 7 C -0.082 4.082 8 C 0.029 3.971 9 C -0.550 4.550 10 H 0.050 0.950 11 C 0.005 3.995 12 N -0.928 5.928 13 Si 0.961 3.039 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.270 1.270 17 C 0.122 3.878 18 C -0.133 4.133 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.110 4.110 22 C -0.133 4.133 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.265 0.735 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -2.987 24.243 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.302 5.302 4 C 0.308 3.692 5 O -0.450 6.450 6 C -0.164 4.164 7 C -0.121 4.121 8 C -0.008 4.008 9 C -0.588 4.588 10 H 0.068 0.932 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.785 3.215 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.195 1.195 17 C 0.032 3.968 18 C -0.153 4.153 19 C -0.134 4.134 20 C -0.141 4.141 21 C -0.128 4.128 22 C -0.153 4.153 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.144 -2.551 24.070 24.206 hybrid contribution -0.020 0.545 -1.178 1.298 sum -0.164 -2.006 22.892 22.981 Atomic orbital electron populations 1.22191 0.94852 1.03783 1.01892 1.21985 0.95427 0.79545 1.05217 1.45762 1.65676 1.15621 1.03138 1.21314 0.76384 0.85446 0.86091 1.90672 1.44580 1.21945 1.87839 1.21744 1.04436 1.00447 0.89821 1.21185 0.99789 0.97448 0.93644 1.18990 0.95417 0.95046 0.91382 1.21655 1.41670 1.02809 0.92676 0.93168 1.25884 0.94899 0.96817 1.01720 1.70051 1.44776 1.20777 1.21204 0.85569 0.78984 0.78920 0.77999 1.19453 1.20243 1.19486 1.17899 0.96271 0.95502 0.87087 1.21348 0.99547 0.96839 0.97582 1.21332 0.98801 0.99866 0.93402 1.21561 0.94891 0.96999 1.00665 1.21404 0.99965 0.95593 0.95856 1.21442 0.96106 1.02014 0.95701 0.93253 0.92786 0.88854 0.88049 0.88469 0.87065 0.87426 0.94280 0.94131 0.97861 0.97997 0.92603 0.87646 0.83929 0.82884 0.82820 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.23 71.98 0.74 -2.15 16 2 C 0.10 1.81 5.84 86.38 0.50 2.31 16 3 N -0.57 -15.28 2.52 -631.27 -1.59 -16.88 16 4 C 0.52 17.95 7.52 87.66 0.66 18.61 16 5 O -0.57 -25.02 15.73 -3.05 -0.05 -25.07 16 6 C -0.13 -4.26 4.37 29.85 0.13 -4.13 16 7 C -0.08 -3.74 4.44 30.59 0.14 -3.60 16 8 C 0.03 1.54 4.97 29.85 0.15 1.69 16 9 C -0.55 -32.72 9.11 25.60 0.23 -32.48 16 10 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 11 C 0.00 0.29 5.46 84.65 0.46 0.75 16 12 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 13 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 C 0.12 3.22 4.76 38.15 0.18 3.41 16 18 C -0.13 -3.49 9.53 22.39 0.21 -3.28 16 19 C -0.12 -2.34 10.04 22.25 0.22 -2.12 16 20 C -0.12 -2.04 10.04 22.29 0.22 -1.81 16 21 C -0.11 -1.86 10.04 22.25 0.22 -1.64 16 22 C -0.13 -2.86 9.68 22.39 0.22 -2.64 16 23 H 0.05 0.99 6.95 -2.39 -0.02 0.98 16 24 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.41 7.85 -2.39 -0.02 1.39 16 27 H 0.10 1.63 6.47 -2.39 -0.02 1.61 16 28 H 0.11 3.29 7.26 -2.39 -0.02 3.27 16 29 H 0.11 3.30 6.95 -2.39 -0.02 3.28 16 30 H 0.04 1.85 8.10 -2.38 -0.02 1.84 16 31 H 0.04 1.92 8.10 -2.38 -0.02 1.90 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -74.34 329.03 5.97 -68.36 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.01 Total: 9.35 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.29 Total: -27.08 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.31 Total: -73.04 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.34 5.97 -68.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593949226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.889 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds