Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47271 * 239.99661 * 3 2 1 5 5 H 1.48496 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47054 * 119.99809 * 3 2 1 7 7 C 1.37880 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00120 * 173.26318 * 7 2 1 9 9 C 1.50697 * 119.99612 * 353.26213 * 7 2 1 10 10 C 1.52999 * 115.54854 * 84.72007 * 9 7 2 11 11 N 1.46905 * 109.47324 * 65.23024 * 10 9 7 12 12 C 1.46899 * 111.00022 * 176.03838 * 11 10 9 13 13 H 1.09008 * 109.75092 * 35.64108 * 12 11 10 14 14 C 1.53442 * 109.72226 * 156.27297 * 12 11 10 15 15 C 1.53123 * 109.20355 * 168.21325 * 14 12 11 16 16 C 1.53241 * 109.57163 * 290.58732 * 15 14 12 17 17 N 1.46585 * 108.79869 * 50.55367 * 16 15 14 18 18 N 1.39654 * 127.54485 * 162.67498 * 17 16 15 19 19 C 1.31027 * 108.12763 * 180.13586 * 18 17 16 20 20 C 1.40057 * 108.25161 * 359.96058 * 19 18 17 21 21 C 1.34745 * 107.80098 * 359.97438 * 20 19 18 22 22 C 1.52996 * 117.49748 * 230.38375 * 9 7 2 23 23 C 1.52992 * 117.50248 * 299.04590 * 9 7 2 24 24 H 0.96994 * 120.00312 * 5.03357 * 1 2 3 25 25 H 1.09001 * 109.47223 * 305.22572 * 10 9 7 26 26 H 1.09004 * 109.46900 * 185.22603 * 10 9 7 27 27 H 1.00902 * 110.99820 * 299.99245 * 11 10 9 28 28 H 1.09001 * 109.51787 * 288.14687 * 14 12 11 29 29 H 1.09001 * 109.51319 * 48.31413 * 14 12 11 30 30 H 1.08996 * 109.46168 * 170.54649 * 15 14 12 31 31 H 1.09003 * 109.43888 * 50.60607 * 15 14 12 32 32 H 1.09004 * 109.57600 * 290.76377 * 16 15 14 33 33 H 1.08994 * 109.70017 * 170.42320 * 16 15 14 34 34 H 1.07998 * 125.87263 * 180.02562 * 19 18 17 35 35 H 1.08003 * 126.09655 * 180.02562 * 20 19 18 36 36 H 1.09004 * 117.50431 * 215.00764 * 22 9 7 37 37 H 1.09003 * 117.50227 * 0.02681 * 22 9 7 38 38 H 1.09006 * 117.49614 * 359.97438 * 23 9 7 39 39 H 1.08996 * 117.50160 * 144.99898 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0790 -1.1973 -0.1092 9 6 1.2589 -2.4945 0.1542 10 6 0.6831 -3.0815 -1.1360 11 7 1.7816 -3.4559 -2.0367 12 6 1.2694 -4.1101 -3.2481 13 1 0.3213 -3.6572 -3.5385 14 6 2.2859 -3.9586 -4.3875 15 6 1.8884 -4.8813 -5.5431 16 6 2.1001 -6.3417 -5.1300 17 7 1.4489 -6.5657 -3.8360 18 7 1.1063 -7.7892 -3.2562 19 6 0.5408 -7.5478 -2.0992 20 6 0.5077 -6.1608 -1.9080 21 6 1.0716 -5.5827 -2.9866 22 6 1.7624 -3.4765 1.2139 23 6 0.4612 -2.7035 1.4429 24 1 -0.4850 0.8367 -0.0737 25 1 0.0512 -2.3386 -1.6229 26 1 0.0896 -3.9648 -0.9001 27 1 2.3470 -2.6535 -2.2704 28 1 2.2943 -2.9248 -4.7331 29 1 3.2784 -4.2316 -4.0288 30 1 2.5037 -4.6576 -6.4146 31 1 0.8386 -4.7223 -5.7896 32 1 3.1674 -6.5453 -5.0421 33 1 1.6627 -7.0023 -5.8785 34 1 0.1657 -8.2907 -1.4109 35 1 0.1032 -5.6464 -1.0488 36 1 1.6834 -4.5408 0.9919 37 1 2.6327 -3.1818 1.8002 38 1 0.4761 -1.9004 2.1799 39 1 -0.4738 -3.2591 1.3716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595048390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = 100.945385 kcal Electronic energy + Delta-G solvation = -19945.982515 eV Core-core repulsion = 17083.716437 eV Total energy + Delta-G solvation = -2862.266078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21275 -37.30477 -36.30904 -34.16913 -31.91919 -30.49143 -29.82927 -27.83211 -25.64627 -24.46286 -22.55762 -22.13731 -20.91983 -20.76138 -19.14654 -18.58114 -16.44877 -15.94497 -15.72103 -14.68700 -14.64512 -14.47882 -14.13519 -14.05695 -13.61790 -13.56854 -13.11217 -12.56020 -12.29567 -12.15570 -11.60578 -11.27375 -11.16591 -11.04460 -10.95611 -10.84940 -10.80509 -10.44999 -10.25045 -10.09011 -9.38287 -8.94164 -8.72992 -8.42173 -8.18102 -8.05933 -7.59647 -6.03334 -4.09770 2.19505 2.71523 3.20547 3.27523 3.33705 3.36615 4.38245 4.41206 4.51667 4.69784 4.85531 5.01507 5.17631 5.25459 5.31379 5.42433 5.48439 5.58509 5.67426 5.68631 5.87749 5.99184 6.11859 6.16829 6.23336 6.47338 6.56874 6.67513 6.86363 6.88045 6.94472 7.02534 7.20428 7.29733 7.53727 7.57546 7.86976 7.91396 8.03532 8.20783 8.50361 8.93743 9.56040 11.04397 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.005806 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.180811 B = 4821.138383 C = 5599.981444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.051 3.949 10 C 0.102 3.898 11 N -0.666 5.666 12 C 0.145 3.855 13 H 0.061 0.939 14 C -0.129 4.129 15 C -0.132 4.132 16 C 0.136 3.864 17 N -0.375 5.375 18 N -0.310 5.310 19 C 0.040 3.960 20 C -0.257 4.257 21 C 0.111 3.889 22 C -0.199 4.199 23 C -0.162 4.162 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.354 0.646 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.178 0.822 35 H 0.149 0.851 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -8.661 -9.603 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.050 3.950 10 C -0.027 4.027 11 N -0.299 5.299 12 C 0.033 3.967 13 H 0.079 0.921 14 C -0.167 4.167 15 C -0.171 4.171 16 C 0.015 3.985 17 N -0.160 5.160 18 N -0.131 5.131 19 C -0.146 4.146 20 C -0.286 4.286 21 C -0.017 4.017 22 C -0.237 4.237 23 C -0.201 4.201 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.175 0.825 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.195 0.805 35 H 0.167 0.833 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.046 -10.002 -10.176 14.414 hybrid contribution -0.256 2.268 0.250 2.296 sum 1.790 -7.734 -9.926 12.709 Atomic orbital electron populations 1.69975 1.05851 1.26710 1.49110 1.24997 0.94752 0.98756 0.94701 0.86752 0.79670 0.83401 0.78691 1.20338 1.21437 1.20225 1.20444 0.93034 0.88901 1.50924 0.92283 1.18692 0.97407 0.93255 0.85612 1.21641 0.90880 0.96281 0.93861 1.60313 1.23461 1.33770 1.12404 1.20131 0.97279 0.88002 0.91287 0.92098 1.21866 1.00136 1.00353 0.94324 1.21911 1.03272 0.92752 0.99186 1.21683 0.97598 0.97548 0.81712 1.48584 1.47696 1.03532 1.16163 1.77158 1.21334 1.03503 1.11100 1.23871 0.99280 0.96512 0.94916 1.21227 1.12550 0.93272 1.01513 1.21067 0.97425 0.91855 0.91319 1.22872 0.97514 0.95988 1.07278 1.22537 0.92548 1.01373 1.03598 0.93044 0.94570 0.93483 0.82493 0.90278 0.90231 0.89108 0.90782 0.90295 0.89566 0.80485 0.83330 0.91491 0.91036 0.90412 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.14 12.95 55.43 0.72 -23.42 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 20.46 29.55 -169.99 -5.02 15.43 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.88 8.30 -34.44 -0.29 -13.16 16 8 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 9 C 0.05 1.21 1.55 -155.67 -0.24 0.97 16 10 C 0.10 2.17 5.23 -3.82 -0.02 2.15 16 11 N -0.67 -12.42 6.22 -107.61 -0.67 -13.08 16 12 C 0.15 2.28 2.87 -68.55 -0.20 2.08 16 13 H 0.06 0.98 7.88 -51.92 -0.41 0.57 16 14 C -0.13 -1.56 5.27 -26.44 -0.14 -1.70 16 15 C -0.13 -1.27 5.93 -26.54 -0.16 -1.43 16 16 C 0.14 1.51 7.28 -3.87 -0.03 1.48 16 17 N -0.38 -5.77 4.04 -56.96 -0.23 -6.00 16 18 N -0.31 -5.13 12.62 30.70 0.39 -4.74 16 19 C 0.04 0.62 12.03 -17.21 -0.21 0.41 16 20 C -0.26 -4.37 10.01 -40.14 -0.40 -4.77 16 21 C 0.11 1.83 6.29 -82.22 -0.52 1.31 16 22 C -0.20 -4.42 9.96 -26.70 -0.27 -4.69 16 23 C -0.16 -3.81 9.46 -26.70 -0.25 -4.06 16 24 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 25 H 0.04 0.86 8.13 -51.93 -0.42 0.43 16 26 H 0.05 0.97 5.20 -51.93 -0.27 0.70 16 27 H 0.35 6.76 7.93 -39.29 -0.31 6.44 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.15 2.60 5.81 -52.48 -0.30 2.29 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -29.32 316.78 -8.76 -38.08 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.91 Total: 8.58 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.81 Total: -19.62 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.21 Total: -47.25 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.32 -8.76 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595048390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.028 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds