Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47271 * 239.99661 * 3 2 1 5 5 H 1.48496 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47054 * 119.99809 * 3 2 1 7 7 C 1.37880 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00120 * 173.26318 * 7 2 1 9 9 C 1.50697 * 119.99612 * 353.26213 * 7 2 1 10 10 C 1.52999 * 115.54854 * 84.72007 * 9 7 2 11 11 N 1.46905 * 109.47324 * 65.23024 * 10 9 7 12 12 C 1.46899 * 111.00022 * 176.03838 * 11 10 9 13 13 H 1.09008 * 109.75092 * 35.64108 * 12 11 10 14 14 C 1.53442 * 109.72226 * 156.27297 * 12 11 10 15 15 C 1.53123 * 109.20355 * 168.21325 * 14 12 11 16 16 C 1.53241 * 109.57163 * 290.58732 * 15 14 12 17 17 N 1.46585 * 108.79869 * 50.55367 * 16 15 14 18 18 N 1.39654 * 127.54485 * 162.67498 * 17 16 15 19 19 C 1.31027 * 108.12763 * 180.13586 * 18 17 16 20 20 C 1.40057 * 108.25161 * 359.96058 * 19 18 17 21 21 C 1.34745 * 107.80098 * 359.97438 * 20 19 18 22 22 C 1.52996 * 117.49748 * 230.38375 * 9 7 2 23 23 C 1.52992 * 117.50248 * 299.04590 * 9 7 2 24 24 H 0.96994 * 120.00312 * 5.03357 * 1 2 3 25 25 H 1.09001 * 109.47223 * 305.22572 * 10 9 7 26 26 H 1.09004 * 109.46900 * 185.22603 * 10 9 7 27 27 H 1.00902 * 110.99820 * 299.99245 * 11 10 9 28 28 H 1.09001 * 109.51787 * 288.14687 * 14 12 11 29 29 H 1.09001 * 109.51319 * 48.31413 * 14 12 11 30 30 H 1.08996 * 109.46168 * 170.54649 * 15 14 12 31 31 H 1.09003 * 109.43888 * 50.60607 * 15 14 12 32 32 H 1.09004 * 109.57600 * 290.76377 * 16 15 14 33 33 H 1.08994 * 109.70017 * 170.42320 * 16 15 14 34 34 H 1.07998 * 125.87263 * 180.02562 * 19 18 17 35 35 H 1.08003 * 126.09655 * 180.02562 * 20 19 18 36 36 H 1.09004 * 117.50431 * 215.00764 * 22 9 7 37 37 H 1.09003 * 117.50227 * 0.02681 * 22 9 7 38 38 H 1.09006 * 117.49614 * 359.97438 * 23 9 7 39 39 H 1.08996 * 117.50160 * 144.99898 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0790 -1.1973 -0.1092 9 6 1.2589 -2.4945 0.1542 10 6 0.6831 -3.0815 -1.1360 11 7 1.7816 -3.4559 -2.0367 12 6 1.2694 -4.1101 -3.2481 13 1 0.3213 -3.6572 -3.5385 14 6 2.2859 -3.9586 -4.3875 15 6 1.8884 -4.8813 -5.5431 16 6 2.1001 -6.3417 -5.1300 17 7 1.4489 -6.5657 -3.8360 18 7 1.1063 -7.7892 -3.2562 19 6 0.5408 -7.5478 -2.0992 20 6 0.5077 -6.1608 -1.9080 21 6 1.0716 -5.5827 -2.9866 22 6 1.7624 -3.4765 1.2139 23 6 0.4612 -2.7035 1.4429 24 1 -0.4850 0.8367 -0.0737 25 1 0.0512 -2.3386 -1.6229 26 1 0.0896 -3.9648 -0.9001 27 1 2.3470 -2.6535 -2.2704 28 1 2.2943 -2.9248 -4.7331 29 1 3.2784 -4.2316 -4.0288 30 1 2.5037 -4.6576 -6.4146 31 1 0.8386 -4.7223 -5.7896 32 1 3.1674 -6.5453 -5.0421 33 1 1.6627 -7.0023 -5.8785 34 1 0.1657 -8.2907 -1.4109 35 1 0.1032 -5.6464 -1.0488 36 1 1.6834 -4.5408 0.9919 37 1 2.6327 -3.1818 1.8002 38 1 0.4761 -1.9004 2.1799 39 1 -0.4738 -3.2591 1.3716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595048390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = 83.135029 kcal Electronic energy + Delta-G solvation = -19946.754830 eV Core-core repulsion = 17083.716437 eV Total energy + Delta-G solvation = -2863.038393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.39286 -38.89160 -37.63552 -35.48479 -33.93374 -31.69414 -31.05021 -29.03935 -27.57962 -25.92943 -23.87893 -23.17300 -22.77370 -21.96813 -20.92470 -19.75334 -17.88748 -17.63529 -16.87575 -16.58255 -15.99295 -15.80088 -15.43143 -15.28321 -15.13162 -14.73133 -14.48120 -14.22782 -13.50997 -13.37405 -13.17186 -12.88755 -12.82182 -12.69429 -12.35676 -12.19774 -12.01959 -11.96008 -11.86168 -11.49840 -11.20975 -10.66931 -10.36935 -10.11464 -9.90525 -9.41214 -9.17723 -8.05197 -6.16750 0.97175 1.43799 1.47033 1.52859 1.66146 1.95598 2.45495 3.22412 3.25394 3.52023 3.63256 3.72412 3.80563 4.02387 4.19415 4.29153 4.37118 4.39265 4.58746 4.65668 4.70092 4.71142 4.83765 4.87324 4.95840 4.97856 5.05232 5.09826 5.13529 5.24613 5.32192 5.40389 5.69507 5.71235 5.80993 5.83632 6.14086 6.32331 6.51542 6.65712 6.83149 6.92484 7.51545 9.01864 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.005806 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.180811 B = 4821.138383 C = 5599.981444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.053 0.947 9 C 0.032 3.968 10 C 0.120 3.880 11 N -0.666 5.666 12 C 0.144 3.856 13 H 0.054 0.946 14 C -0.124 4.124 15 C -0.122 4.122 16 C 0.124 3.876 17 N -0.374 5.374 18 N -0.328 5.328 19 C 0.039 3.961 20 C -0.282 4.282 21 C 0.101 3.899 22 C -0.179 4.179 23 C -0.169 4.169 24 H 0.258 0.742 25 H 0.006 0.994 26 H 0.053 0.947 27 H 0.351 0.649 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.206 0.794 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -9.188 -11.151 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.009 4.009 11 N -0.298 5.298 12 C 0.032 3.968 13 H 0.072 0.928 14 C -0.162 4.162 15 C -0.160 4.160 16 C 0.004 3.996 17 N -0.159 5.159 18 N -0.150 5.150 19 C -0.146 4.146 20 C -0.311 4.311 21 C -0.027 4.027 22 C -0.216 4.216 23 C -0.207 4.207 24 H 0.067 0.933 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.171 0.829 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.222 0.778 35 H 0.156 0.844 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.146 -10.547 -11.745 16.096 hybrid contribution -0.583 2.384 0.734 2.562 sum 2.563 -8.163 -11.011 13.945 Atomic orbital electron populations 1.70087 1.07071 1.27216 1.50194 1.25624 0.95409 1.01616 0.94547 0.85815 0.78459 0.79723 0.78808 1.19215 1.21532 1.20362 1.20667 0.92917 0.90112 1.50531 0.92842 1.18864 0.97884 0.93389 0.86777 1.21320 0.91084 0.95372 0.93143 1.60239 1.22485 1.33299 1.13820 1.20219 0.98130 0.87226 0.91250 0.92799 1.21858 0.98625 1.01876 0.93839 1.21917 1.04010 0.90933 0.99155 1.22113 0.98147 0.98973 0.80355 1.48943 1.47141 1.02749 1.17071 1.77109 1.21911 1.04377 1.11583 1.24298 0.98699 0.96512 0.95068 1.21324 1.13673 0.94275 1.01806 1.21158 0.97523 0.92333 0.91705 1.22815 0.96521 0.96450 1.05853 1.22461 0.93705 1.01333 1.03212 0.93256 0.97564 0.92916 0.82904 0.89132 0.90575 0.85346 0.90837 0.89111 0.87769 0.77754 0.84442 0.89929 0.91244 0.92627 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.53 12.95 21.45 0.28 -50.25 16 2 C 0.03 1.50 5.39 84.66 0.46 1.96 16 3 Si 0.95 42.00 29.55 68.60 2.03 44.02 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.50 -26.37 8.30 25.60 0.21 -26.16 16 8 H 0.05 2.80 7.82 -2.91 -0.02 2.77 16 9 C 0.03 1.51 1.55 -52.93 -0.08 1.43 16 10 C 0.12 5.19 5.23 86.30 0.45 5.64 16 11 N -0.67 -24.69 6.22 -494.38 -3.07 -27.77 16 12 C 0.14 4.40 2.87 44.37 0.13 4.52 16 13 H 0.05 1.74 7.88 -2.38 -0.02 1.72 16 14 C -0.12 -2.74 5.27 30.78 0.16 -2.58 16 15 C -0.12 -1.94 5.93 30.72 0.18 -1.76 16 16 C 0.12 2.40 7.28 86.44 0.63 3.03 16 17 N -0.37 -10.88 4.04 -334.12 -1.35 -12.23 16 18 N -0.33 -10.38 12.62 -56.80 -0.72 -11.09 16 19 C 0.04 1.17 12.03 85.25 1.03 2.20 16 20 C -0.28 -9.47 10.01 21.91 0.22 -9.25 16 21 C 0.10 3.26 6.29 41.28 0.26 3.52 16 22 C -0.18 -7.88 9.96 30.62 0.30 -7.57 16 23 C -0.17 -8.01 9.46 30.62 0.29 -7.72 16 24 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 25 H 0.01 0.30 8.13 -2.39 -0.02 0.28 16 26 H 0.05 2.20 5.20 -2.39 -0.01 2.19 16 27 H 0.35 13.31 7.93 -89.69 -0.71 12.60 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 30 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.21 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.14 4.84 5.81 -2.91 -0.02 4.83 16 36 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 37 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 39 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -62.67 316.78 1.73 -60.93 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.33 Total: 29.13 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.24 Total: -32.75 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -4.86 Total: -101.34 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -62.67 1.73 -60.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595048390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.067 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds