Wall clock time and date at job start Mon Mar 30 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35891 * 117.00142 * 2 1 4 4 C 1.38818 * 120.08391 * 0.02562 * 3 2 1 5 5 C 1.37957 * 119.83088 * 179.85151 * 4 3 2 6 6 C 1.38668 * 120.56334 * 0.03287 * 5 4 3 7 7 C 1.38428 * 119.94696 * 0.19082 * 6 5 4 8 8 C 1.38295 * 120.08464 * 180.02562 * 3 2 1 9 9 N 1.39403 * 122.96045 * 179.60381 * 7 6 5 10 10 C 1.46900 * 111.00308 * 145.51835 * 9 7 6 11 11 C 1.52996 * 109.46832 * 300.65545 * 10 9 7 12 12 C 1.50699 * 109.46950 * 174.86831 * 11 10 9 13 13 H 1.08005 * 120.00369 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00272 * 180.02562 * 12 11 10 15 15 N 1.31525 * 119.99450 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00334 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47215 * 89.99776 * 16 14 12 18 18 H 1.48498 * 109.47288 * 209.99903 * 16 14 12 19 19 H 1.48501 * 109.47515 * 330.00016 * 16 14 12 20 20 C 1.46430 * 113.14324 * 19.95889 * 9 7 6 21 21 C 1.53386 * 108.64514 * 306.67748 * 20 9 7 22 22 C 1.50826 * 118.05883 * 180.25018 * 6 5 4 23 23 H 1.08996 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46787 * 300.00303 * 1 2 3 25 25 H 1.08991 * 109.46848 * 60.00070 * 1 2 3 26 26 H 1.08002 * 120.08660 * 359.84134 * 4 3 2 27 27 H 1.08001 * 119.71839 * 180.02562 * 5 4 3 28 28 H 1.07994 * 119.80651 * 0.05609 * 8 3 2 29 29 H 1.08994 * 109.47448 * 180.65467 * 10 9 7 30 30 H 1.08996 * 109.46973 * 60.65651 * 10 9 7 31 31 H 1.08997 * 109.47147 * 294.86496 * 11 10 9 32 32 H 1.08997 * 109.47111 * 54.87032 * 11 10 9 33 33 H 0.96998 * 119.99564 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.60367 * 66.42585 * 20 9 7 35 35 H 1.08998 * 109.60726 * 186.76082 * 20 9 7 36 36 H 1.08997 * 109.76400 * 187.90572 * 21 20 9 37 37 H 1.08998 * 109.77293 * 308.64083 * 21 20 9 38 38 H 1.08999 * 109.43831 * 75.38864 * 22 6 5 39 39 H 1.08994 * 109.44327 * 315.49703 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3761 0.0005 5 6 1.9235 3.6025 0.0036 6 6 3.3078 3.6826 0.0055 7 6 4.0669 2.5250 0.0003 8 6 3.4270 1.2852 -0.0005 9 7 5.4609 2.5322 -0.0062 10 6 5.9969 1.4034 0.7661 11 6 5.4994 1.4916 2.2102 12 6 5.9445 0.2689 2.9704 13 1 6.5240 -0.4949 2.4731 14 6 5.6112 0.1248 4.3005 15 7 4.9051 1.0547 4.9060 16 14 6.1623 -1.3911 5.2426 17 1 7.4888 -1.1356 5.8593 18 1 5.1731 -1.6997 6.3063 19 1 6.2632 -2.5433 4.3112 20 6 6.0321 3.8001 0.4525 21 6 5.4168 4.9406 -0.3682 22 6 3.9393 5.0523 0.0147 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.2130 2.3228 -0.0016 27 1 1.3348 4.5080 0.0045 28 1 4.0134 0.3783 -0.0019 29 1 7.0862 1.4397 0.7542 30 1 5.6598 0.4668 0.3222 31 1 5.9116 2.3832 2.6827 32 1 4.4109 1.5471 2.2167 33 1 4.6709 0.9535 5.8418 34 1 5.8024 3.9440 1.5082 35 1 7.1128 3.7866 0.3118 36 1 5.9283 5.8758 -0.1410 37 1 5.5072 4.7199 -1.4318 38 1 3.8546 5.4840 1.0120 39 1 3.4262 5.6931 -0.7022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595817476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:24 Heat of formation + Delta-G solvation = -14.960457 kcal Electronic energy + Delta-G solvation = -20075.135495 eV Core-core repulsion = 17175.550611 eV Total energy + Delta-G solvation = -2899.584884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37906 -38.67235 -35.74857 -34.26355 -32.72039 -29.97213 -29.38648 -28.95048 -26.83171 -25.23524 -23.79250 -22.47579 -22.06820 -20.30931 -19.05980 -17.48787 -16.56435 -16.04870 -15.48013 -15.37942 -15.08286 -14.52574 -14.19674 -14.08456 -13.40293 -13.21241 -12.83232 -12.57636 -12.56370 -12.17758 -12.00377 -11.98840 -11.48265 -11.17208 -10.93661 -10.86277 -10.69833 -10.50322 -10.36484 -10.21547 -10.02680 -9.70228 -9.16507 -8.99845 -8.33677 -7.71221 -7.04008 -6.00059 -4.03078 1.88180 1.92927 3.31857 3.38173 3.41877 3.58306 4.11001 4.45088 4.56005 5.00941 5.15392 5.19516 5.28645 5.33581 5.35630 5.38263 5.46452 5.60142 5.64035 5.79222 5.85861 6.00076 6.05890 6.10882 6.16990 6.23864 6.33684 6.45030 6.55876 6.66409 6.77670 6.80662 6.90227 6.98982 7.51451 7.61419 7.69626 7.82201 7.94955 7.99755 8.38949 9.02931 9.60656 11.10925 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.007696 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.961315 B = 3637.350898 C = 4891.120479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.147 3.853 4 C -0.244 4.244 5 C -0.059 4.059 6 C -0.169 4.169 7 C 0.190 3.810 8 C -0.179 4.179 9 N -0.498 5.498 10 C 0.054 3.946 11 C -0.006 4.006 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.055 3.945 21 C -0.121 4.121 22 C -0.068 4.068 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.136 0.864 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.016 0.984 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 5.726 -10.730 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.230 6.230 3 C 0.101 3.899 4 C -0.264 4.264 5 C -0.078 4.078 6 C -0.173 4.173 7 C 0.089 3.911 8 C -0.200 4.200 9 N -0.210 5.210 10 C -0.070 4.070 11 C -0.044 4.044 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.072 4.072 21 C -0.159 4.159 22 C -0.106 4.106 23 H 0.112 0.888 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.154 0.846 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.609 5.522 -11.026 13.547 hybrid contribution -0.277 -0.656 1.432 1.599 sum -5.886 4.866 -9.594 12.262 Atomic orbital electron populations 1.22958 0.79174 1.03305 1.00983 1.86070 1.20724 1.27356 1.88867 1.18644 0.91935 0.83749 0.95555 1.20892 0.99202 0.92399 1.13899 1.20553 0.93292 0.96625 0.97341 1.19332 0.93281 0.93907 1.10748 1.18194 0.88266 0.91891 0.92758 1.20319 0.91501 0.97873 1.10283 1.58416 1.03923 1.06051 1.52603 1.22608 0.99007 0.90718 0.94697 1.19681 0.97633 0.97534 0.89507 1.21087 1.34209 1.05186 0.95316 0.92559 1.24999 0.95062 0.96372 0.97793 1.69979 1.38140 1.33726 1.11251 0.86599 0.78324 0.83428 0.79711 1.20690 1.21241 1.19782 1.22135 0.99043 0.87462 0.98539 1.21706 0.95480 0.98008 1.00663 1.20384 0.95210 0.93546 1.01420 0.88755 0.92849 0.93122 0.86291 0.86518 0.84599 0.91241 0.90759 0.96621 0.95307 0.93045 0.92405 0.90271 0.91096 0.91112 0.91287 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.32 -5.61 10.49 -19.40 -0.20 -5.82 16 3 C 0.15 2.76 6.67 -39.35 -0.26 2.50 16 4 C -0.24 -4.01 9.04 -39.47 -0.36 -4.36 16 5 C -0.06 -0.95 9.62 -39.53 -0.38 -1.33 16 6 C -0.17 -2.95 5.75 -104.33 -0.60 -3.55 16 7 C 0.19 3.71 4.79 -83.87 -0.40 3.31 16 8 C -0.18 -3.64 7.76 -39.08 -0.30 -3.95 16 9 N -0.50 -9.48 4.72 -171.30 -0.81 -10.29 16 10 C 0.05 1.14 4.78 -3.83 -0.02 1.12 16 11 C -0.01 -0.15 4.31 -27.89 -0.12 -0.27 16 12 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.72 5.46 -17.81 -0.10 1.62 16 15 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.05 0.91 5.25 -3.88 -0.02 0.89 16 21 C -0.12 -1.65 6.19 -26.51 -0.16 -1.81 16 22 C -0.07 -0.97 5.81 -27.80 -0.16 -1.13 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 25 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 26 H 0.12 1.61 6.31 -52.49 -0.33 1.27 16 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.14 2.88 5.90 -52.49 -0.31 2.57 16 29 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 30 H 0.07 1.57 6.11 -51.93 -0.32 1.26 16 31 H 0.02 0.43 6.82 -51.93 -0.35 0.08 16 32 H 0.03 0.82 6.18 -51.93 -0.32 0.50 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 1.10 6.56 -51.93 -0.34 0.76 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -31.89 307.97 -8.55 -40.45 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.69 Total: 1.13 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.21 Total: -20.62 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.07 Total: -36.67 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.20 Total: -5.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.89 -8.55 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595817476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.486 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds