Wall clock time and date at job start Mon Mar 30 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35891 * 117.00142 * 2 1 4 4 C 1.38818 * 120.08391 * 0.02562 * 3 2 1 5 5 C 1.37957 * 119.83088 * 179.85151 * 4 3 2 6 6 C 1.38668 * 120.56334 * 0.03287 * 5 4 3 7 7 C 1.38428 * 119.94696 * 0.19082 * 6 5 4 8 8 C 1.38295 * 120.08464 * 180.02562 * 3 2 1 9 9 N 1.39403 * 122.96045 * 179.60381 * 7 6 5 10 10 C 1.46900 * 111.00308 * 145.51835 * 9 7 6 11 11 C 1.52996 * 109.46832 * 300.65545 * 10 9 7 12 12 C 1.50699 * 109.46950 * 174.86831 * 11 10 9 13 13 H 1.08005 * 120.00369 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00272 * 180.02562 * 12 11 10 15 15 N 1.31525 * 119.99450 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00334 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47215 * 89.99776 * 16 14 12 18 18 H 1.48498 * 109.47288 * 209.99903 * 16 14 12 19 19 H 1.48501 * 109.47515 * 330.00016 * 16 14 12 20 20 C 1.46430 * 113.14324 * 19.95889 * 9 7 6 21 21 C 1.53386 * 108.64514 * 306.67748 * 20 9 7 22 22 C 1.50826 * 118.05883 * 180.25018 * 6 5 4 23 23 H 1.08996 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46787 * 300.00303 * 1 2 3 25 25 H 1.08991 * 109.46848 * 60.00070 * 1 2 3 26 26 H 1.08002 * 120.08660 * 359.84134 * 4 3 2 27 27 H 1.08001 * 119.71839 * 180.02562 * 5 4 3 28 28 H 1.07994 * 119.80651 * 0.05609 * 8 3 2 29 29 H 1.08994 * 109.47448 * 180.65467 * 10 9 7 30 30 H 1.08996 * 109.46973 * 60.65651 * 10 9 7 31 31 H 1.08997 * 109.47147 * 294.86496 * 11 10 9 32 32 H 1.08997 * 109.47111 * 54.87032 * 11 10 9 33 33 H 0.96998 * 119.99564 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.60367 * 66.42585 * 20 9 7 35 35 H 1.08998 * 109.60726 * 186.76082 * 20 9 7 36 36 H 1.08997 * 109.76400 * 187.90572 * 21 20 9 37 37 H 1.08998 * 109.77293 * 308.64083 * 21 20 9 38 38 H 1.08999 * 109.43831 * 75.38864 * 22 6 5 39 39 H 1.08994 * 109.44327 * 315.49703 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3761 0.0005 5 6 1.9235 3.6025 0.0036 6 6 3.3078 3.6826 0.0055 7 6 4.0669 2.5250 0.0003 8 6 3.4270 1.2852 -0.0005 9 7 5.4609 2.5322 -0.0062 10 6 5.9969 1.4034 0.7661 11 6 5.4994 1.4916 2.2102 12 6 5.9445 0.2689 2.9704 13 1 6.5240 -0.4949 2.4731 14 6 5.6112 0.1248 4.3005 15 7 4.9051 1.0547 4.9060 16 14 6.1623 -1.3911 5.2426 17 1 7.4888 -1.1356 5.8593 18 1 5.1731 -1.6997 6.3063 19 1 6.2632 -2.5433 4.3112 20 6 6.0321 3.8001 0.4525 21 6 5.4168 4.9406 -0.3682 22 6 3.9393 5.0523 0.0147 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.2130 2.3228 -0.0016 27 1 1.3348 4.5080 0.0045 28 1 4.0134 0.3783 -0.0019 29 1 7.0862 1.4397 0.7542 30 1 5.6598 0.4668 0.3222 31 1 5.9116 2.3832 2.6827 32 1 4.4109 1.5471 2.2167 33 1 4.6709 0.9535 5.8418 34 1 5.8024 3.9440 1.5082 35 1 7.1128 3.7866 0.3118 36 1 5.9283 5.8758 -0.1410 37 1 5.5072 4.7199 -1.4318 38 1 3.8546 5.4840 1.0120 39 1 3.4262 5.6931 -0.7022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595817476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:24 Heat of formation + Delta-G solvation = -34.871254 kcal Electronic energy + Delta-G solvation = -20075.998892 eV Core-core repulsion = 17175.550611 eV Total energy + Delta-G solvation = -2900.448281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75445 -39.99392 -37.18017 -35.72761 -34.68666 -31.62968 -30.68324 -30.53841 -27.97374 -26.98050 -25.34686 -23.81410 -23.70820 -21.90765 -20.34155 -18.84523 -18.66102 -17.44849 -16.86996 -16.63318 -16.57294 -16.35104 -15.69023 -15.38837 -14.83618 -14.62417 -14.32800 -14.13968 -13.97405 -13.80720 -13.42424 -13.26018 -13.00321 -12.85059 -12.75186 -12.37926 -12.05957 -12.01959 -11.83854 -11.61255 -11.52864 -11.48279 -11.18509 -10.65631 -10.44859 -9.11501 -8.50302 -8.21602 -6.34374 0.49720 0.55987 1.36124 1.37942 1.48945 2.35513 2.38473 2.74350 3.10153 3.14102 3.80983 3.94745 3.98182 4.14213 4.19664 4.25322 4.38192 4.40815 4.51306 4.54119 4.60360 4.66522 4.69786 4.77503 4.82582 4.94582 4.97392 5.04793 5.08433 5.21198 5.36451 5.41873 5.45663 5.52610 5.56414 5.70722 5.77447 6.04715 6.27170 6.41430 6.58108 6.81408 7.34223 8.88542 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.007696 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.961315 B = 3637.350898 C = 4891.120479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.130 3.870 4 C -0.241 4.241 5 C -0.058 4.058 6 C -0.181 4.181 7 C 0.163 3.837 8 C -0.212 4.212 9 N -0.495 5.495 10 C 0.069 3.931 11 C 0.012 3.988 12 C -0.541 4.541 13 H 0.061 0.939 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.049 3.951 21 C -0.111 4.111 22 C -0.069 4.069 23 H 0.117 0.883 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.068 0.932 31 H -0.010 1.010 32 H -0.004 1.004 33 H 0.262 0.738 34 H 0.027 0.973 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 6.645 -11.423 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.259 6.259 3 C 0.085 3.915 4 C -0.261 4.261 5 C -0.077 4.077 6 C -0.184 4.184 7 C 0.063 3.937 8 C -0.234 4.234 9 N -0.207 5.207 10 C -0.056 4.056 11 C -0.026 4.026 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.788 3.212 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.077 4.077 21 C -0.149 4.149 22 C -0.106 4.106 23 H 0.135 0.865 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.169 0.831 27 H 0.174 0.826 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.008 0.992 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.368 6.445 -11.740 14.830 hybrid contribution -0.154 -0.940 1.639 1.896 sum -6.522 5.506 -10.101 13.224 Atomic orbital electron populations 1.23315 0.76450 1.05348 1.02215 1.86029 1.23649 1.27346 1.88843 1.18856 0.91750 0.85091 0.95820 1.21291 1.00762 0.91663 1.12338 1.21065 0.93088 0.97972 0.95561 1.19843 0.94189 0.94695 1.09658 1.18453 0.88529 0.92598 0.94106 1.20366 0.92695 0.97581 1.12722 1.58483 1.04212 1.06112 1.51895 1.22288 0.99339 0.91963 0.92056 1.19424 0.95335 0.95662 0.92210 1.21547 1.34259 1.06084 0.96067 0.92073 1.25949 0.94987 0.99701 0.98903 1.70118 1.39349 1.35872 1.11664 0.85472 0.78221 0.79373 0.78170 1.19402 1.20825 1.18843 1.22284 1.00160 0.87857 0.97406 1.21707 0.95246 0.97744 1.00184 1.20497 0.95623 0.92031 1.02413 0.86526 0.92413 0.90892 0.83089 0.82597 0.87129 0.90210 0.91390 0.99153 0.98545 0.92884 0.95499 0.88905 0.87974 0.90512 0.91301 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.60 16 2 O -0.34 -12.42 10.49 -92.32 -0.97 -13.39 16 3 C 0.13 5.01 6.67 22.42 0.15 5.16 16 4 C -0.24 -7.56 9.04 22.34 0.20 -7.36 16 5 C -0.06 -1.74 9.62 22.31 0.21 -1.53 16 6 C -0.18 -6.12 5.75 -19.68 -0.11 -6.23 16 7 C 0.16 6.55 4.79 38.29 0.18 6.74 16 8 C -0.21 -9.14 7.76 22.59 0.18 -8.97 16 9 N -0.49 -19.36 4.72 -695.88 -3.29 -22.65 16 10 C 0.07 3.06 4.78 86.30 0.41 3.47 16 11 C 0.01 0.65 4.31 29.85 0.13 0.77 16 12 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 13 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 16 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.05 1.64 5.25 86.52 0.45 2.10 16 21 C -0.11 -2.80 6.19 30.74 0.19 -2.61 16 22 C -0.07 -1.79 5.81 29.90 0.17 -1.61 16 23 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.06 1.28 7.67 -2.39 -0.02 1.26 16 25 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 26 H 0.15 3.63 6.31 -2.91 -0.02 3.61 16 27 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.11 5.13 5.90 -2.91 -0.02 5.11 16 29 H 0.08 3.31 8.11 -2.39 -0.02 3.29 16 30 H 0.07 3.08 6.11 -2.39 -0.01 3.06 16 31 H -0.01 -0.58 6.82 -2.39 -0.02 -0.59 16 32 H 0.00 -0.23 6.18 -2.39 -0.01 -0.24 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.03 1.06 6.56 -2.39 -0.02 1.04 16 35 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -72.16 307.97 3.07 -69.09 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.03 Total: 16.59 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.98 Total: -39.32 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -3.00 Total: -80.49 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.97 Total: -13.39 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.16 3.07 -69.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595817476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.216 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds