Wall clock time and date at job start Mon Mar 30 2020 07:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47186 * 2 1 4 4 C 1.53000 * 109.47164 * 239.99774 * 2 1 3 5 5 C 1.50696 * 109.46743 * 119.99942 * 2 1 3 6 6 N 1.31784 * 119.08455 * 239.99480 * 5 2 1 7 7 C 1.32547 * 121.01312 * 180.02562 * 6 5 2 8 8 C 1.38116 * 119.19780 * 0.02562 * 7 6 5 9 9 C 1.39618 * 118.33655 * 359.97438 * 8 7 6 10 10 N 1.38544 * 120.53838 * 179.97438 * 9 8 7 11 11 C 1.47475 * 111.00606 * 205.54867 * 10 9 8 12 12 C 1.53513 * 87.93507 * 138.69902 * 11 10 9 13 13 C 1.50699 * 114.17216 * 220.33127 * 12 11 10 14 14 H 1.07997 * 119.99809 * 93.84227 * 13 12 11 15 15 C 1.37877 * 119.99771 * 273.83825 * 13 12 11 16 16 N 1.31516 * 120.00163 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99685 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47072 * 60.00496 * 17 15 13 19 19 H 1.48505 * 109.47087 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47575 * 300.00354 * 17 15 13 21 21 C 1.47485 * 110.99655 * 301.52165 * 10 9 8 22 22 N 1.31750 * 119.08674 * 60.00139 * 5 2 1 23 23 H 1.08996 * 109.47422 * 300.00301 * 1 2 3 24 24 H 1.09008 * 109.47027 * 59.99991 * 1 2 3 25 25 H 1.08994 * 109.47742 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47044 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47144 * 299.99937 * 3 2 1 28 28 H 1.09001 * 109.47603 * 59.99713 * 3 2 1 29 29 H 1.09004 * 109.47222 * 300.00926 * 4 2 1 30 30 H 1.09008 * 109.46957 * 60.00191 * 4 2 1 31 31 H 1.08994 * 109.47680 * 180.02562 * 4 2 1 32 32 H 1.08007 * 120.40317 * 179.97438 * 7 6 5 33 33 H 1.08003 * 120.83537 * 180.02562 * 8 7 6 34 34 H 1.08995 * 113.47817 * 253.47340 * 11 10 9 35 35 H 1.09004 * 113.46923 * 23.93731 * 11 10 9 36 36 H 1.09003 * 114.16590 * 87.62055 * 12 11 10 37 37 H 0.96996 * 119.99773 * 179.97438 * 16 15 13 38 38 H 1.08998 * 113.47602 * 336.06379 * 21 10 9 39 39 H 1.09007 * 113.47292 * 106.46757 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 2.7887 -0.0527 2.0860 7 6 3.2517 -0.6402 3.1802 8 6 2.9330 -1.9622 3.4214 9 6 2.1296 -2.6299 2.4951 10 7 1.7825 -3.9567 2.6914 11 6 1.4885 -4.6216 1.4083 12 6 2.2514 -5.8465 1.9319 13 6 3.1229 -6.5175 0.9016 14 1 4.1663 -6.2509 0.8207 15 6 2.5880 -7.4717 0.0623 16 7 1.3173 -7.7960 0.1605 17 14 3.6681 -8.3028 -1.2153 18 1 4.7849 -9.0077 -0.5363 19 1 2.8597 -9.2819 -1.9855 20 1 4.2181 -7.2794 -2.1400 21 6 2.9829 -4.8075 2.7932 22 7 1.7030 -1.9718 1.4210 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7217 -1.2491 32 1 3.8713 -0.0919 3.8745 33 1 3.2956 -2.4668 4.3048 34 1 0.4264 -4.8071 1.2487 35 1 1.9671 -4.1451 0.5527 36 1 1.6376 -6.5451 2.5005 37 1 0.9410 -8.4670 -0.4302 38 1 3.8602 -4.3806 2.3073 39 1 3.1877 -5.1497 3.8077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596431967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:49 Heat of formation + Delta-G solvation = 61.042082 kcal Electronic energy + Delta-G solvation = -19815.260018 eV Core-core repulsion = 16951.263603 eV Total energy + Delta-G solvation = -2863.996415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.57110 -40.63904 -37.58034 -35.14252 -34.20827 -32.49342 -29.97186 -28.22394 -28.13562 -27.11928 -26.65085 -25.01147 -23.68513 -21.00888 -20.46301 -18.95517 -18.48391 -17.68671 -16.71609 -16.54250 -16.25233 -15.93820 -15.83287 -15.18657 -14.72848 -14.66634 -14.37825 -14.02075 -13.45843 -13.15050 -13.10231 -13.03538 -12.83040 -12.59276 -12.51670 -12.45091 -12.31901 -11.96699 -11.85439 -11.73014 -11.45095 -11.37975 -11.05863 -10.75438 -10.56718 -10.16781 -9.68722 -8.19591 -6.31713 -0.04976 0.15448 1.42415 1.43279 1.51317 2.38537 2.56866 2.81160 2.99692 3.09012 3.29071 3.75502 3.92334 4.02153 4.04251 4.15409 4.22174 4.28019 4.42021 4.49412 4.62527 4.67564 4.73459 4.73667 4.83478 4.84968 4.96014 5.01141 5.02250 5.07306 5.09300 5.20879 5.34240 5.45045 5.52969 5.53993 5.76441 6.12917 6.18687 6.20543 6.76310 7.19978 7.37416 8.90215 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.005671 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.527412 B = 4935.958462 C = 5567.248931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.003 4.003 3 C -0.114 4.114 4 C -0.131 4.131 5 C 0.332 3.668 6 N -0.545 5.545 7 C 0.162 3.838 8 C -0.252 4.252 9 C 0.311 3.689 10 N -0.441 5.441 11 C 0.046 3.954 12 C 0.025 3.975 13 C -0.532 4.532 14 H 0.060 0.940 15 C 0.020 3.980 16 N -0.918 5.918 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.033 3.967 22 N -0.564 5.564 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.210 0.790 33 H 0.165 0.835 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.265 0.735 38 H 0.065 0.935 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 16.150 1.950 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.005 4.005 3 C -0.172 4.172 4 C -0.189 4.189 5 C 0.063 3.937 6 N -0.261 5.261 7 C -0.002 4.002 8 C -0.276 4.276 9 C 0.071 3.929 10 N -0.158 5.158 11 C -0.082 4.082 12 C 0.006 3.994 13 C -0.570 4.570 14 H 0.079 0.921 15 C -0.181 4.181 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.093 4.093 22 N -0.283 5.283 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.226 0.774 33 H 0.183 0.817 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.191 16.467 1.658 16.695 hybrid contribution 0.790 -1.309 -0.247 1.548 sum 2.980 15.158 1.411 15.513 Atomic orbital electron populations 1.21776 0.92251 1.01779 1.02862 1.19546 0.96579 0.95843 0.88578 1.21610 1.01185 0.91922 1.02474 1.21795 1.00458 1.00070 0.96580 1.23443 0.89108 0.85942 0.95201 1.68322 1.13533 1.39249 1.04958 1.23694 0.92718 0.90974 0.92814 1.22684 1.03572 0.98292 1.03067 1.21276 0.88790 0.93671 0.89131 1.65711 1.24179 0.98222 1.27734 1.23663 1.00153 0.95278 0.89132 1.20144 0.93954 0.91359 0.93956 1.21213 0.96165 1.22103 1.17557 0.92138 1.25798 0.96158 0.96818 0.99283 1.70071 1.13673 1.32546 1.39344 0.85628 0.78884 0.78308 0.78983 1.18971 1.20880 1.19806 1.23944 0.90483 0.92708 1.02154 1.68109 1.27251 1.11385 1.21539 0.93089 0.89072 0.93895 0.92635 0.90143 0.92394 0.94041 0.89018 0.93448 0.77355 0.81719 0.93454 0.92394 0.93809 0.92642 0.91656 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.37 71.98 0.60 -2.61 16 2 C 0.00 -0.09 0.92 -52.93 -0.05 -0.14 16 3 C -0.11 -2.39 7.67 71.98 0.55 -1.84 16 4 C -0.13 -3.48 8.37 71.98 0.60 -2.88 16 5 C 0.33 10.96 6.25 138.76 0.87 11.83 16 6 N -0.54 -16.13 9.00 -188.11 -1.69 -17.82 16 7 C 0.16 4.09 11.29 84.56 0.95 5.04 16 8 C -0.25 -7.41 9.46 22.57 0.21 -7.20 16 9 C 0.31 11.85 6.06 133.16 0.81 12.65 16 10 N -0.44 -18.52 6.47 -731.30 -4.73 -23.25 16 11 C 0.05 2.22 6.76 83.58 0.56 2.79 16 12 C 0.03 1.26 3.77 -11.20 -0.04 1.22 16 13 C -0.53 -28.67 8.82 25.60 0.23 -28.45 16 14 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 15 C 0.02 1.08 5.46 84.65 0.46 1.54 16 16 N -0.92 -53.26 13.26 21.45 0.28 -52.98 16 17 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C 0.03 1.35 6.68 83.57 0.56 1.90 16 22 N -0.56 -21.89 8.30 -185.45 -1.54 -23.43 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.04 1.28 8.01 -2.39 -0.02 1.27 16 26 H 0.05 1.22 8.04 -2.39 -0.02 1.20 16 27 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 29 H 0.04 1.33 8.01 -2.39 -0.02 1.31 16 30 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.21 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.17 3.99 8.01 -2.91 -0.02 3.96 16 34 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.96 7.26 -2.38 -0.02 2.95 16 36 H 0.04 2.40 8.11 -2.39 -0.02 2.38 16 37 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 38 H 0.07 2.61 7.83 -2.39 -0.02 2.59 16 39 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 Total: -1.00 -63.96 322.25 1.68 -62.28 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.01 Total: 16.59 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 6.32 Total: -6.15 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -7.68 Total: -117.47 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -63.96 1.68 -62.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596431967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.321 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds