Wall clock time and date at job start Mon Mar 30 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 C 1.38116 * 120.39674 * 75.00280 * 5 2 1 7 7 C 1.39622 * 118.33365 * 179.97438 * 6 5 2 8 8 N 1.38540 * 120.53645 * 180.02562 * 7 6 5 9 9 C 1.47487 * 110.99342 * 275.96832 * 8 7 6 10 10 C 1.53517 * 87.92782 * 221.29337 * 9 8 7 11 11 C 1.50700 * 114.16663 * 139.67343 * 10 9 8 12 12 H 1.08000 * 119.99692 * 266.15227 * 11 10 9 13 13 C 1.37874 * 120.00375 * 86.16064 * 11 10 9 14 14 N 1.31517 * 119.99750 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00423 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46664 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47084 * 119.99509 * 15 13 11 18 18 H 1.48496 * 109.47533 * 239.99749 * 15 13 11 19 19 C 1.47477 * 111.00150 * 179.97438 * 8 7 6 20 20 N 1.32997 * 118.93576 * 359.97438 * 7 6 5 21 21 C 1.31756 * 120.68500 * 0.02562 * 20 7 6 22 22 N 1.31792 * 121.83286 * 359.72995 * 21 20 7 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.07997 * 120.83384 * 359.97438 * 6 5 2 33 33 H 1.08997 * 113.48000 * 336.05612 * 9 8 7 34 34 H 1.08995 * 113.47489 * 106.52903 * 9 8 7 35 35 H 1.08997 * 114.34006 * 272.36249 * 10 9 8 36 36 H 0.97001 * 120.00056 * 179.97438 * 14 13 11 37 37 H 1.09001 * 113.47178 * 253.46482 * 19 8 7 38 38 H 1.08998 * 113.48014 * 23.86999 * 19 8 7 39 39 H 1.08001 * 119.08130 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.9746 -0.0947 -2.4655 7 6 2.4525 -0.7922 -3.5766 8 7 2.4171 -0.2179 -4.8369 9 6 1.0974 -0.4082 -5.4674 10 6 1.8307 -0.7029 -6.7835 11 6 1.2305 -1.8287 -7.5855 12 1 1.6101 -2.8336 -7.4736 13 6 0.1968 -1.5760 -8.4622 14 7 -0.2657 -0.3523 -8.5981 15 14 -0.5467 -2.9713 -9.4568 16 1 0.1462 -4.2415 -9.1223 17 1 -1.9906 -3.0956 -9.1327 18 1 -0.3873 -2.6865 -10.9054 19 6 2.9720 -1.1337 -5.8509 20 7 2.9433 -2.0164 -3.4057 21 6 2.9789 -2.5654 -2.2085 22 7 2.5401 -1.9314 -1.1397 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 1.5700 0.9012 -2.5691 33 1 0.5482 -1.2641 -5.0753 34 1 0.4964 0.5005 -5.4992 35 1 2.0529 0.1809 -7.3816 36 1 -0.9927 -0.1744 -9.2152 37 1 3.9591 -0.8396 -6.2077 38 1 2.9242 -2.1833 -5.5607 39 1 3.3826 -3.5612 -2.0994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596433912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:13 Heat of formation + Delta-G solvation = 78.341811 kcal Electronic energy + Delta-G solvation = -19567.336217 eV Core-core repulsion = 16704.089975 eV Total energy + Delta-G solvation = -2863.246243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20204 -39.06355 -36.90902 -33.28830 -32.19570 -31.34935 -28.32724 -27.39806 -27.24205 -25.28460 -24.86170 -23.68645 -22.48276 -19.61065 -18.77255 -17.30032 -16.97191 -16.12359 -15.23903 -15.07365 -14.84204 -14.43013 -14.29852 -14.13403 -13.76875 -13.70630 -12.90367 -12.41904 -12.24594 -12.10661 -11.77169 -11.57226 -11.43050 -11.22722 -11.15656 -11.10604 -11.00341 -10.56197 -10.49106 -10.10583 -9.90861 -9.53401 -9.32192 -9.08541 -8.87742 -8.54009 -8.17726 -6.13296 -4.17725 1.23092 1.35113 3.24867 3.33476 3.37899 3.94749 4.05052 4.23331 4.38097 4.43934 4.83689 4.87040 4.91845 5.16165 5.28186 5.33721 5.48132 5.53936 5.60510 5.65128 5.73524 5.78771 5.82346 5.89035 5.98361 6.02658 6.16712 6.20301 6.28324 6.33716 6.44085 6.64767 6.74253 6.82590 6.88890 7.40975 7.63041 7.79281 7.90561 8.27136 8.42564 8.86602 9.48096 10.96357 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031075 B = 0.004579 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.821573 B = 6114.037792 C = 6265.248930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.019 4.019 3 C -0.141 4.141 4 C -0.125 4.125 5 C 0.189 3.811 6 C -0.225 4.225 7 C 0.340 3.660 8 N -0.448 5.448 9 C 0.027 3.973 10 C 0.042 3.958 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.282 1.282 19 C 0.007 3.993 20 N -0.551 5.551 21 C 0.309 3.691 22 N -0.541 5.541 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.143 0.857 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 1.334 16.264 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 C -0.199 4.199 4 C -0.183 4.183 5 C 0.044 3.956 6 C -0.249 4.249 7 C 0.101 3.899 8 N -0.167 5.167 9 C -0.099 4.099 10 C 0.023 3.977 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.121 4.121 20 N -0.270 5.270 21 C 0.020 3.980 22 N -0.258 5.258 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.079 1.233 16.334 16.667 hybrid contribution -1.002 -0.587 -0.662 1.336 sum 2.077 0.646 15.672 15.823 Atomic orbital electron populations 1.21871 0.92837 1.02445 1.02400 1.19521 0.96019 0.94777 0.91711 1.21936 1.01363 0.94100 1.02485 1.21665 1.01157 1.00664 0.94789 1.21330 0.90388 0.89986 0.93851 1.22184 1.06852 1.03172 0.92691 1.21138 0.87374 0.86911 0.94460 1.66364 1.14206 1.38777 0.97372 1.24220 0.88513 1.00157 0.97022 1.20199 0.89438 0.97724 0.90386 1.21039 1.17385 0.93971 1.22794 0.91994 1.25032 0.96646 0.95592 0.96324 1.69969 1.26635 1.19171 1.36565 0.86521 0.78988 0.82496 0.79969 1.19573 1.20974 1.20799 1.24096 1.00032 0.96660 0.91296 1.68514 1.20660 1.10994 1.26859 1.24732 0.91427 0.99169 0.82719 1.68185 1.14173 1.09445 1.33954 0.92110 0.91644 0.92309 0.91696 0.92411 0.91866 0.91579 0.92614 0.92877 0.83950 0.92160 0.90708 0.91308 0.92794 0.91655 0.89203 0.79308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.41 37.16 0.31 -1.11 16 2 C -0.02 -0.22 0.88 -155.66 -0.14 -0.36 16 3 C -0.14 -1.39 8.10 37.15 0.30 -1.09 16 4 C -0.13 -1.30 7.83 37.16 0.29 -1.01 16 5 C 0.19 2.78 5.56 -82.33 -0.46 2.33 16 6 C -0.22 -3.69 9.13 -39.11 -0.36 -4.05 16 7 C 0.34 6.52 5.86 -154.77 -0.91 5.62 16 8 N -0.45 -9.35 6.43 -182.33 -1.17 -10.52 16 9 C 0.03 0.60 7.23 -7.48 -0.05 0.55 16 10 C 0.04 1.03 3.77 -91.22 -0.34 0.69 16 11 C -0.51 -13.79 8.82 -34.44 -0.30 -14.09 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -24.92 13.26 55.43 0.74 -24.19 16 15 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.01 0.15 6.96 -7.47 -0.05 0.10 16 20 N -0.55 -10.30 8.36 -13.81 -0.12 -10.42 16 21 C 0.31 4.89 12.28 -92.19 -1.13 3.76 16 22 N -0.54 -8.33 9.19 -10.88 -0.10 -8.43 16 23 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.63 6.79 -51.93 -0.35 0.28 16 29 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 2.15 6.83 -52.49 -0.36 1.79 16 33 H 0.06 1.42 7.85 -51.93 -0.41 1.01 16 34 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 35 H 0.07 1.82 8.11 -51.93 -0.42 1.40 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 2.01 6.65 -51.93 -0.35 1.67 16 39 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -28.70 319.94 -9.86 -38.55 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.07 Total: 1.36 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.94 Total: -6.96 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.65 Total: -53.56 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.70 -9.86 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596433912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.896 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds