Wall clock time and date at job start Mon Mar 30 2020 07:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 C 1.38116 * 120.39674 * 75.00280 * 5 2 1 7 7 C 1.39622 * 118.33365 * 179.97438 * 6 5 2 8 8 N 1.38540 * 120.53645 * 180.02562 * 7 6 5 9 9 C 1.47487 * 110.99342 * 275.96832 * 8 7 6 10 10 C 1.53517 * 87.92782 * 221.29337 * 9 8 7 11 11 C 1.50700 * 114.16663 * 139.67343 * 10 9 8 12 12 H 1.08000 * 119.99692 * 266.15227 * 11 10 9 13 13 C 1.37874 * 120.00375 * 86.16064 * 11 10 9 14 14 N 1.31517 * 119.99750 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00423 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46664 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47084 * 119.99509 * 15 13 11 18 18 H 1.48496 * 109.47533 * 239.99749 * 15 13 11 19 19 C 1.47477 * 111.00150 * 179.97438 * 8 7 6 20 20 N 1.32997 * 118.93576 * 359.97438 * 7 6 5 21 21 C 1.31756 * 120.68500 * 0.02562 * 20 7 6 22 22 N 1.31792 * 121.83286 * 359.72995 * 21 20 7 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.07997 * 120.83384 * 359.97438 * 6 5 2 33 33 H 1.08997 * 113.48000 * 336.05612 * 9 8 7 34 34 H 1.08995 * 113.47489 * 106.52903 * 9 8 7 35 35 H 1.08997 * 114.34006 * 272.36249 * 10 9 8 36 36 H 0.97001 * 120.00056 * 179.97438 * 14 13 11 37 37 H 1.09001 * 113.47178 * 253.46482 * 19 8 7 38 38 H 1.08998 * 113.48014 * 23.86999 * 19 8 7 39 39 H 1.08001 * 119.08130 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.9746 -0.0947 -2.4655 7 6 2.4525 -0.7922 -3.5766 8 7 2.4171 -0.2179 -4.8369 9 6 1.0974 -0.4082 -5.4674 10 6 1.8307 -0.7029 -6.7835 11 6 1.2305 -1.8287 -7.5855 12 1 1.6101 -2.8336 -7.4736 13 6 0.1968 -1.5760 -8.4622 14 7 -0.2657 -0.3523 -8.5981 15 14 -0.5467 -2.9713 -9.4568 16 1 0.1462 -4.2415 -9.1223 17 1 -1.9906 -3.0956 -9.1327 18 1 -0.3873 -2.6865 -10.9054 19 6 2.9720 -1.1337 -5.8509 20 7 2.9433 -2.0164 -3.4057 21 6 2.9789 -2.5654 -2.2085 22 7 2.5401 -1.9314 -1.1397 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 1.5700 0.9012 -2.5691 33 1 0.5482 -1.2641 -5.0753 34 1 0.4964 0.5005 -5.4992 35 1 2.0529 0.1809 -7.3816 36 1 -0.9927 -0.1744 -9.2152 37 1 3.9591 -0.8396 -6.2077 38 1 2.9242 -2.1833 -5.5607 39 1 3.3826 -3.5612 -2.0994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596433912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:12 Heat of formation + Delta-G solvation = 62.629413 kcal Electronic energy + Delta-G solvation = -19568.017558 eV Core-core repulsion = 16704.089975 eV Total energy + Delta-G solvation = -2863.927583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59293 -40.62005 -37.95918 -35.06831 -33.80841 -32.67135 -29.97807 -28.20919 -28.17280 -26.97581 -26.67173 -25.03689 -23.89389 -21.03691 -20.33611 -19.00529 -18.36370 -17.68742 -16.66164 -16.52844 -16.39336 -15.87782 -15.82058 -15.32975 -14.97689 -14.65685 -14.41643 -14.05659 -13.38293 -13.22430 -13.13816 -12.96215 -12.86663 -12.59545 -12.42620 -12.27892 -12.27262 -12.04350 -11.90369 -11.61574 -11.41563 -11.30199 -10.99158 -10.74286 -10.58551 -10.24185 -9.80699 -8.19715 -6.30864 -0.08262 0.02465 1.40734 1.43246 1.54835 2.39712 2.60562 2.84328 2.97644 3.08166 3.22046 3.65052 3.94204 3.97119 4.03688 4.13825 4.23000 4.29703 4.38208 4.54570 4.63378 4.71333 4.75798 4.80310 4.84424 4.87657 4.97972 5.00723 5.01349 5.02798 5.11430 5.20920 5.36624 5.41992 5.51160 5.57353 5.78018 6.07116 6.18612 6.23440 6.77454 7.11769 7.38094 8.90272 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031075 B = 0.004579 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.821573 B = 6114.037792 C = 6265.248930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.020 4.020 3 C -0.139 4.139 4 C -0.121 4.121 5 C 0.193 3.807 6 C -0.226 4.226 7 C 0.310 3.690 8 N -0.444 5.444 9 C 0.042 3.958 10 C 0.028 3.972 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.020 3.980 14 N -0.918 5.918 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.277 1.277 19 C 0.021 3.979 20 N -0.574 5.574 21 C 0.305 3.695 22 N -0.538 5.538 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.265 0.735 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 0.984 18.188 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 C -0.197 4.197 4 C -0.178 4.178 5 C 0.048 3.952 6 C -0.250 4.250 7 C 0.073 3.927 8 N -0.163 5.163 9 C -0.085 4.085 10 C 0.008 3.992 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.180 4.180 14 N -0.556 5.556 15 Si 0.782 3.218 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.107 4.107 20 N -0.293 5.293 21 C 0.016 3.984 22 N -0.253 5.253 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.842 0.875 18.275 18.516 hybrid contribution -0.886 -0.483 -1.128 1.513 sum 1.956 0.391 17.147 17.263 Atomic orbital electron populations 1.21877 0.91856 1.02144 1.03459 1.19712 0.96675 0.95378 0.90373 1.21941 1.01024 0.93082 1.03625 1.21638 1.00664 1.00297 0.95216 1.21987 0.88852 0.89680 0.94650 1.22335 1.06505 1.03595 0.92547 1.21175 0.89485 0.87931 0.94134 1.66303 1.12651 1.39093 0.98254 1.23829 0.89190 0.99245 0.96222 1.20115 0.91529 0.96502 0.91020 1.21292 1.17739 0.94275 1.23484 0.92441 1.25779 0.97002 0.97871 0.97330 1.70069 1.27221 1.20932 1.37356 0.85516 0.78110 0.79624 0.78509 1.19104 1.20543 1.20222 1.23852 0.99449 0.96573 0.90817 1.68460 1.21312 1.11076 1.28468 1.25403 0.90829 1.00220 0.81933 1.68325 1.13776 1.09650 1.33576 0.92796 0.88902 0.93287 0.89098 0.92970 0.92250 0.92556 0.93328 0.90291 0.82920 0.93426 0.91149 0.93797 0.92595 0.90826 0.89747 0.76134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.41 71.98 0.61 -1.86 16 2 C -0.02 -0.41 0.88 -52.93 -0.05 -0.46 16 3 C -0.14 -2.36 8.10 71.98 0.58 -1.78 16 4 C -0.12 -2.16 7.83 71.98 0.56 -1.59 16 5 C 0.19 5.41 5.56 42.42 0.24 5.64 16 6 C -0.23 -7.25 9.13 22.57 0.21 -7.05 16 7 C 0.31 11.88 5.86 133.16 0.78 12.66 16 8 N -0.44 -18.78 6.43 -730.76 -4.70 -23.48 16 9 C 0.04 1.94 7.23 83.62 0.60 2.55 16 10 C 0.03 1.40 3.77 -11.18 -0.04 1.36 16 11 C -0.53 -29.00 8.82 25.60 0.23 -28.77 16 12 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 13 C 0.02 1.11 5.46 84.65 0.46 1.57 16 14 N -0.92 -52.46 13.26 21.45 0.28 -52.17 16 15 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.02 0.93 6.96 83.63 0.58 1.52 16 20 N -0.57 -21.20 8.36 -197.61 -1.65 -22.85 16 21 C 0.31 9.23 12.28 180.90 2.22 11.46 16 22 N -0.54 -15.66 9.19 -188.33 -1.73 -17.39 16 23 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.06 6.79 -2.39 -0.02 1.04 16 29 H 0.06 1.12 7.89 -2.39 -0.02 1.10 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.15 4.49 6.83 -2.91 -0.02 4.47 16 33 H 0.05 2.30 7.85 -2.39 -0.02 2.28 16 34 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.04 2.43 8.11 -2.39 -0.02 2.41 16 36 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.08 3.84 6.65 -2.39 -0.02 3.82 16 39 H 0.22 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -61.79 319.94 2.23 -59.56 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.02 Total: 16.19 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 6.98 Total: -4.75 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -7.79 Total: -115.90 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -61.79 2.23 -59.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596433912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.188 kcal (2) G-P(sol) polarization free energy of solvation -61.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds