Wall clock time and date at job start Mon Mar 30 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.21282 * 119.99524 * 120.00349 * 12 2 1 14 14 N 1.34773 * 119.99914 * 300.00351 * 12 2 1 15 15 C 1.46506 * 119.99778 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47088 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47217 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47331 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99787 * 269.73087 * 18 17 16 20 20 C 1.38235 * 119.99539 * 179.76586 * 19 18 17 21 21 C 1.38242 * 120.00133 * 0.50643 * 20 19 18 22 22 C 1.38232 * 119.99996 * 359.74473 * 21 20 19 23 23 C 1.38231 * 120.00046 * 89.99910 * 18 17 16 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96990 * 120.00366 * 359.97438 * 14 12 2 29 29 H 1.09005 * 109.46943 * 299.99908 * 15 14 12 30 30 H 1.09002 * 109.47064 * 59.99645 * 15 14 12 31 31 H 1.09005 * 109.47052 * 299.99716 * 16 15 14 32 32 H 1.09002 * 109.47560 * 59.99824 * 16 15 14 33 33 H 1.08997 * 109.47244 * 300.00235 * 17 16 15 34 34 H 1.09002 * 109.46787 * 59.99610 * 17 16 15 35 35 H 1.07998 * 120.00202 * 359.97438 * 19 18 17 36 36 H 1.08001 * 120.00140 * 180.22321 * 20 19 18 37 37 H 1.07996 * 119.99649 * 179.72759 * 21 20 19 38 38 H 1.07998 * 120.00329 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.99731 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9401 3.6509 16 6 1.6848 -0.2193 4.9000 17 6 2.1947 -0.9405 6.1493 18 6 1.6922 -0.2302 7.3797 19 6 2.4419 0.7831 7.9474 20 6 1.9786 1.4380 9.0732 21 6 0.7707 1.0724 9.6375 22 6 0.0236 0.0557 9.0729 23 6 0.4844 -0.5956 7.9440 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.9028 -0.5285 -4.4375 28 1 1.1493 0.5389 2.5436 29 1 1.8325 -1.9680 3.6510 30 1 3.2855 -0.9397 3.6507 31 1 2.0474 0.8087 4.9000 32 1 0.5948 -0.2201 4.8999 33 1 1.8319 -1.9683 6.1490 34 1 3.2847 -0.9401 6.1496 35 1 3.3878 1.0654 7.5093 36 1 2.5625 2.2321 9.5147 37 1 0.4109 1.5811 10.5196 38 1 -0.9199 -0.2302 9.5139 39 1 -0.0990 -1.3905 7.5032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596630952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:58 Heat of formation + Delta-G solvation = -28.515424 kcal Electronic energy + Delta-G solvation = -18430.520299 eV Core-core repulsion = 15530.347628 eV Total energy + Delta-G solvation = -2900.172671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59267 -38.89533 -35.71291 -33.78582 -33.31420 -31.29203 -31.13749 -29.93585 -26.00832 -25.10931 -23.02011 -22.82336 -21.72251 -21.08435 -19.25335 -17.05942 -16.72302 -16.07928 -15.87952 -15.47546 -15.17170 -14.92559 -14.38337 -13.91334 -13.63278 -13.57908 -13.26417 -12.95297 -12.81895 -12.29418 -12.16598 -12.12686 -11.70257 -11.54749 -11.33157 -11.04151 -10.97444 -10.81321 -10.56265 -10.26877 -9.61666 -9.17633 -9.07326 -8.96760 -8.65110 -8.56573 -8.49032 -6.02848 -4.02818 1.09963 1.14565 3.24854 3.32386 3.37879 3.50268 3.63037 3.85008 4.39833 4.49646 4.57442 4.74775 4.86460 4.90537 5.12529 5.16480 5.25652 5.27263 5.27772 5.53104 5.54116 5.70599 5.79963 5.82271 5.89922 6.06928 6.13397 6.17423 6.21612 6.25886 6.36048 6.41467 6.47653 6.74970 6.75881 7.00975 7.19006 7.57732 8.16634 8.58530 9.12584 9.19145 9.56396 11.10245 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.003165 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.854927 B = 8844.249470 C = 9144.575525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 H 0.051 0.949 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.267 1.267 11 H -0.296 1.296 12 C 0.527 3.473 13 O -0.532 6.532 14 N -0.749 5.749 15 C 0.120 3.880 16 C -0.123 4.123 17 C -0.080 4.080 18 C -0.077 4.077 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.118 4.118 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.264 0.736 28 H 0.394 0.606 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 5.438 25.570 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.543 4.543 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.223 1.223 12 C 0.315 3.685 13 O -0.407 6.407 14 N -0.404 5.404 15 C -0.005 4.005 16 C -0.161 4.161 17 C -0.118 4.118 18 C -0.077 4.077 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.228 0.772 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.737 4.682 25.264 25.964 hybrid contribution -0.957 1.259 -0.108 1.585 sum -4.694 5.941 25.156 26.271 Atomic orbital electron populations 1.22109 0.97379 1.01474 0.99179 1.19312 0.93174 0.97535 0.92699 0.93083 1.20959 1.32015 1.14083 0.87268 0.88894 1.24993 0.95864 0.96592 0.95765 1.69888 1.45549 1.40219 0.97852 0.86901 0.80685 0.83834 0.77037 1.20540 1.19262 1.22341 1.21261 0.78928 0.84305 0.84004 1.90579 1.37219 1.26333 1.86557 1.46243 1.55639 1.32716 1.05762 1.21208 0.99150 0.96347 0.83747 1.21762 1.01456 0.99946 0.92960 1.20549 1.01300 0.99010 0.90891 1.19938 0.94790 0.96467 0.96538 1.21107 1.00016 0.96168 0.96268 1.21159 0.96424 0.99809 0.96360 1.21144 0.95338 0.97941 1.00231 1.21156 0.99795 0.96478 0.96323 1.21105 0.95943 1.00263 0.96248 0.92393 0.94860 0.93328 0.92593 0.77220 0.92036 0.92028 0.91235 0.91236 0.90517 0.90521 0.85996 0.86179 0.86311 0.86180 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 3 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 4 C -0.51 -14.82 8.96 -34.44 -0.31 -15.13 16 5 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 8 Si 0.89 21.51 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 12 C 0.53 11.70 7.15 -10.98 -0.08 11.62 16 13 O -0.53 -14.03 15.46 5.56 0.09 -13.94 16 14 N -0.75 -12.23 5.45 -60.29 -0.33 -12.56 16 15 C 0.12 1.64 5.67 -4.04 -0.02 1.61 16 16 C -0.12 -1.22 5.31 -26.73 -0.14 -1.37 16 17 C -0.08 -0.70 5.35 -27.88 -0.15 -0.85 16 18 C -0.08 -0.71 5.13 -104.62 -0.54 -1.24 16 19 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 20 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 21 C -0.13 -1.02 10.05 -39.58 -0.40 -1.41 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.03 0.54 7.56 -51.93 -0.39 0.15 16 26 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.39 5.35 7.89 -40.82 -0.32 5.02 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -34.27 321.51 -7.83 -42.09 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.87 Total: 2.86 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -3.18 Total: -13.42 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.45 Total: -39.80 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.27 -7.83 -42.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596630952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.577 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds