Wall clock time and date at job start Mon Mar 30 2020 06:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.21282 * 119.99524 * 120.00349 * 12 2 1 14 14 N 1.34773 * 119.99914 * 300.00351 * 12 2 1 15 15 C 1.46506 * 119.99778 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47088 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47217 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47331 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99787 * 269.73087 * 18 17 16 20 20 C 1.38235 * 119.99539 * 179.76586 * 19 18 17 21 21 C 1.38242 * 120.00133 * 0.50643 * 20 19 18 22 22 C 1.38232 * 119.99996 * 359.74473 * 21 20 19 23 23 C 1.38231 * 120.00046 * 89.99910 * 18 17 16 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96990 * 120.00366 * 359.97438 * 14 12 2 29 29 H 1.09005 * 109.46943 * 299.99908 * 15 14 12 30 30 H 1.09002 * 109.47064 * 59.99645 * 15 14 12 31 31 H 1.09005 * 109.47052 * 299.99716 * 16 15 14 32 32 H 1.09002 * 109.47560 * 59.99824 * 16 15 14 33 33 H 1.08997 * 109.47244 * 300.00235 * 17 16 15 34 34 H 1.09002 * 109.46787 * 59.99610 * 17 16 15 35 35 H 1.07998 * 120.00202 * 359.97438 * 19 18 17 36 36 H 1.08001 * 120.00140 * 180.22321 * 20 19 18 37 37 H 1.07996 * 119.99649 * 179.72759 * 21 20 19 38 38 H 1.07998 * 120.00329 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.99731 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9401 3.6509 16 6 1.6848 -0.2193 4.9000 17 6 2.1947 -0.9405 6.1493 18 6 1.6922 -0.2302 7.3797 19 6 2.4419 0.7831 7.9474 20 6 1.9786 1.4380 9.0732 21 6 0.7707 1.0724 9.6375 22 6 0.0236 0.0557 9.0729 23 6 0.4844 -0.5956 7.9440 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.9028 -0.5285 -4.4375 28 1 1.1493 0.5389 2.5436 29 1 1.8325 -1.9680 3.6510 30 1 3.2855 -0.9397 3.6507 31 1 2.0474 0.8087 4.9000 32 1 0.5948 -0.2201 4.8999 33 1 1.8319 -1.9683 6.1490 34 1 3.2847 -0.9401 6.1496 35 1 3.3878 1.0654 7.5093 36 1 2.5625 2.2321 9.5147 37 1 0.4109 1.5811 10.5196 38 1 -0.9199 -0.2302 9.5139 39 1 -0.0990 -1.3905 7.5032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596630952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:57 Heat of formation + Delta-G solvation = -51.640590 kcal Electronic energy + Delta-G solvation = -18431.523081 eV Core-core repulsion = 15530.347628 eV Total energy + Delta-G solvation = -2901.175454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68046 -40.11061 -36.84677 -35.78084 -34.48387 -33.24244 -31.71824 -30.91182 -27.17381 -26.96512 -24.51552 -23.41054 -22.89630 -21.84833 -20.87139 -18.80549 -17.83380 -17.57041 -17.00251 -16.78460 -16.29826 -16.00036 -15.78091 -15.27618 -14.94448 -14.53268 -14.25347 -14.20531 -14.06077 -13.82325 -13.46696 -13.21731 -12.94215 -12.75904 -12.52948 -12.49211 -12.13164 -11.99038 -11.72429 -11.58968 -11.45927 -11.21291 -10.77225 -10.46464 -9.98052 -9.77485 -9.55401 -8.26590 -6.34577 0.48767 0.54629 1.34122 1.40949 1.52285 1.87738 2.35022 2.40094 2.93803 3.07088 3.74084 3.94149 4.11309 4.16880 4.20026 4.30048 4.36217 4.39362 4.44054 4.53084 4.62039 4.67537 4.73401 4.78060 4.81445 4.92439 5.04109 5.13948 5.18934 5.25775 5.31333 5.46236 5.54076 5.60220 5.63319 5.67682 5.78431 6.17897 6.27584 6.69858 6.87128 7.27063 7.52324 8.91369 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.003165 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.854927 B = 8844.249470 C = 9144.575525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.010 4.010 3 H 0.070 0.930 4 C -0.523 4.523 5 H 0.028 0.972 6 C 0.004 3.996 7 N -0.954 5.954 8 Si 0.962 3.038 9 H -0.260 1.260 10 H -0.229 1.229 11 H -0.300 1.300 12 C 0.524 3.476 13 O -0.588 6.588 14 N -0.723 5.723 15 C 0.118 3.882 16 C -0.107 4.107 17 C -0.076 4.076 18 C -0.089 4.089 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.130 4.130 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.267 0.733 28 H 0.413 0.587 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 8.258 28.010 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 H 0.088 0.912 4 C -0.561 4.561 5 H 0.046 0.954 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.787 3.213 9 H -0.186 1.186 10 H -0.152 1.152 11 H -0.228 1.228 12 C 0.313 3.687 13 O -0.467 6.467 14 N -0.377 5.377 15 C -0.006 4.006 16 C -0.145 4.145 17 C -0.114 4.114 18 C -0.089 4.089 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.148 4.148 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.250 0.750 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.954 7.535 27.780 29.394 hybrid contribution -0.191 0.289 -0.786 0.859 sum -6.145 7.824 26.994 28.769 Atomic orbital electron populations 1.22014 0.94371 1.01620 1.01619 1.19273 0.95494 0.97474 0.90894 0.91245 1.21132 1.31643 1.12844 0.90514 0.95397 1.26079 0.97509 1.00851 0.94765 1.70087 1.47725 1.42894 0.98745 0.85667 0.78709 0.78887 0.78046 1.18573 1.15226 1.22802 1.21083 0.78521 0.83628 0.85512 1.90567 1.39876 1.28812 1.87478 1.45942 1.54368 1.32695 1.04672 1.21372 0.98740 0.96356 0.84085 1.21637 1.01880 0.99841 0.91139 1.20492 1.01425 0.99024 0.90428 1.19979 0.95222 0.96916 0.96797 1.21312 1.00455 0.96332 0.96744 1.21442 0.96793 1.00175 0.96222 1.21461 0.95223 0.97862 1.00769 1.21442 1.00570 0.96426 0.96182 1.21311 0.96076 1.00710 0.96715 0.93614 0.89458 0.93600 0.92402 0.74970 0.92895 0.92960 0.90344 0.90251 0.90317 0.90361 0.85274 0.84545 0.84430 0.84526 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.57 71.98 0.62 -4.66 16 2 C -0.01 -0.45 2.23 -12.28 -0.03 -0.48 16 3 H 0.07 2.96 7.20 -2.38 -0.02 2.94 16 4 C -0.52 -31.76 8.96 25.60 0.23 -31.53 16 5 H 0.03 2.00 7.00 -2.91 -0.02 1.98 16 6 C 0.00 0.24 5.45 84.66 0.46 0.71 16 7 N -0.95 -62.01 13.96 21.45 0.30 -61.72 16 8 Si 0.96 43.30 24.37 68.60 1.67 44.97 16 9 H -0.26 -10.91 6.87 99.48 0.68 -10.23 16 10 H -0.23 -8.86 6.53 99.48 0.65 -8.21 16 11 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 12 C 0.52 23.14 7.15 87.66 0.63 23.76 16 13 O -0.59 -32.28 15.46 -3.03 -0.05 -32.33 16 14 N -0.72 -22.00 5.45 -463.05 -2.52 -24.52 16 15 C 0.12 3.06 5.67 86.38 0.49 3.55 16 16 C -0.11 -1.84 5.31 30.59 0.16 -1.68 16 17 C -0.08 -1.20 5.35 29.85 0.16 -1.04 16 18 C -0.09 -1.46 5.13 -19.87 -0.10 -1.56 16 19 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 20 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 21 C -0.14 -1.82 10.05 22.27 0.22 -1.59 16 22 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 23 C -0.13 -2.03 9.70 22.27 0.22 -1.81 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 2.37 7.56 -2.39 -0.02 2.35 16 26 H 0.05 1.78 3.27 -2.39 -0.01 1.77 16 27 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 28 H 0.41 9.46 7.89 -92.72 -0.73 8.73 16 29 H 0.05 1.49 8.14 -2.38 -0.02 1.48 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 35 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -79.72 321.51 3.34 -76.38 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.22 Total: 18.54 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 3.72 Total: -21.34 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.22 Total: -86.23 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.67 Total: 44.97 kcal Total: -79.72 3.34 -76.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596630952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.741 kcal (2) G-P(sol) polarization free energy of solvation -79.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds