Wall clock time and date at job start Mon Mar 30 2020 06:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47094 * 89.99954 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 O 1.21281 * 119.99736 * 240.00187 * 12 2 1 14 14 N 1.34779 * 120.00201 * 59.99469 * 12 2 1 15 15 C 1.46503 * 119.99606 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46575 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47060 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 180.02562 * 17 16 15 19 19 C 1.38237 * 119.99773 * 269.72358 * 18 17 16 20 20 C 1.38236 * 119.99746 * 179.76278 * 19 18 17 21 21 C 1.38240 * 119.99790 * 0.51661 * 20 19 18 22 22 C 1.38228 * 120.00363 * 359.74089 * 21 20 19 23 23 C 1.38234 * 120.00195 * 90.00079 * 18 17 16 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 28 28 H 0.96991 * 119.99747 * 0.02562 * 14 12 2 29 29 H 1.08992 * 109.47080 * 299.99586 * 15 14 12 30 30 H 1.09001 * 109.47138 * 60.00172 * 15 14 12 31 31 H 1.09002 * 109.47398 * 300.00091 * 16 15 14 32 32 H 1.09001 * 109.47194 * 60.00272 * 16 15 14 33 33 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 34 34 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 35 35 H 1.07997 * 120.00286 * 0.02562 * 19 18 17 36 36 H 1.08004 * 120.00147 * 180.22810 * 20 19 18 37 37 H 1.08005 * 119.99603 * 179.72078 * 21 20 19 38 38 H 1.07995 * 120.00333 * 179.97438 * 22 21 20 39 39 H 1.08007 * 119.99975 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1947 -0.9407 -3.6508 16 6 1.6842 -0.2197 -4.9000 17 6 2.1943 -0.9408 -6.1492 18 6 1.6919 -0.2303 -7.3797 19 6 0.4868 -0.5995 -7.9474 20 6 0.0237 0.0555 -9.0732 21 6 0.7708 1.0725 -9.6375 22 6 1.9784 1.4382 -9.0729 23 6 2.4390 0.7868 -7.9439 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7095 1.1617 3.4844 28 1 1.1494 0.5390 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8310 -1.9682 -3.6506 31 1 0.5942 -0.2197 -4.8996 32 1 2.0475 0.8080 -4.9003 33 1 3.2843 -0.9404 -6.1494 34 1 1.8314 -1.9686 -6.1492 35 1 -0.0949 -1.3969 -7.5090 36 1 -0.9196 -0.2305 -9.5147 37 1 0.4111 1.5813 -10.5197 38 1 2.5623 2.2325 -9.5139 39 1 3.3829 1.0720 -7.5032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596630953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:59 Heat of formation + Delta-G solvation = -38.402192 kcal Electronic energy + Delta-G solvation = -18366.618284 eV Core-core repulsion = 15466.016890 eV Total energy + Delta-G solvation = -2900.601394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54436 -38.72297 -35.62228 -33.68702 -33.22571 -31.09750 -30.75386 -29.62749 -25.85968 -25.09079 -22.79888 -22.78287 -21.63917 -21.02712 -19.18582 -17.01454 -16.29894 -15.95793 -15.80390 -15.43861 -14.91973 -14.84497 -14.33390 -13.75992 -13.56487 -13.48060 -13.23751 -12.74378 -12.58844 -12.13006 -12.05037 -11.64391 -11.47410 -11.26386 -11.00414 -10.95834 -10.80645 -10.66868 -10.65692 -10.20083 -9.92903 -9.13601 -8.94522 -8.91420 -8.55836 -8.38016 -8.28298 -6.00110 -4.03013 1.14110 1.18585 3.35823 3.41253 3.48472 3.55164 3.79619 3.98966 4.49840 4.55741 4.61676 4.78720 4.90409 4.96075 5.18907 5.24242 5.30950 5.32048 5.33301 5.58150 5.60305 5.78908 5.84210 5.89674 6.11442 6.14002 6.25587 6.29740 6.39365 6.45956 6.65522 6.79797 6.86618 6.96710 7.15185 7.51592 7.79231 8.02884 8.19501 8.50471 9.06257 9.30180 9.62564 11.07601 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.050319 B = 0.002945 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.319057 B = 9506.622410 C = 9686.909631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.748 5.748 15 C 0.120 3.880 16 C -0.123 4.123 17 C -0.079 4.079 18 C -0.077 4.077 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.118 4.118 24 H 0.093 0.907 25 H 0.012 0.988 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.395 0.605 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 1.794 -22.669 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.308 3.692 13 O -0.424 6.424 14 N -0.403 5.403 15 C -0.005 4.005 16 C -0.161 4.161 17 C -0.117 4.117 18 C -0.077 4.077 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.229 0.771 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.168 1.161 -22.427 22.487 hybrid contribution -0.036 0.060 0.667 0.670 sum -1.204 1.221 -21.760 21.828 Atomic orbital electron populations 1.21739 0.96587 0.99773 1.00889 1.18871 0.94129 0.96822 0.89462 0.93064 1.21158 1.30823 1.12778 0.89048 0.90809 1.24953 0.95144 0.95105 0.99111 1.69873 1.37214 1.23171 1.23480 0.86454 0.78429 0.80268 0.82078 1.20681 1.21310 1.19762 1.21963 0.78445 0.84268 0.84547 1.90523 1.38068 1.26975 1.86851 1.46291 1.55576 1.32679 1.05714 1.21181 0.98979 0.96287 0.84022 1.21762 1.01479 0.99944 0.92932 1.20551 1.01238 0.98989 0.90954 1.19944 0.94834 0.96415 0.96503 1.21106 0.95938 1.00256 0.96256 1.21155 0.99763 0.96458 0.96370 1.21138 0.95322 0.97972 1.00243 1.21151 0.96444 0.99822 0.96329 1.21105 1.00047 0.96170 0.96238 0.88876 0.96935 0.95038 0.93003 0.77101 0.92253 0.92271 0.91224 0.91237 0.90583 0.90580 0.86009 0.86189 0.86324 0.86190 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.43 8.37 -34.45 -0.29 -14.72 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.50 11.32 55.43 0.63 -24.88 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 12 C 0.52 12.07 7.15 -10.99 -0.08 12.00 16 13 O -0.55 -14.66 15.46 5.56 0.09 -14.57 16 14 N -0.75 -13.19 5.45 -60.29 -0.33 -13.52 16 15 C 0.12 1.75 5.67 -4.04 -0.02 1.72 16 16 C -0.12 -1.33 5.31 -26.73 -0.14 -1.47 16 17 C -0.08 -0.75 5.35 -27.88 -0.15 -0.90 16 18 C -0.08 -0.74 5.13 -104.62 -0.54 -1.28 16 19 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 21 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 23 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.40 6.04 7.89 -40.82 -0.32 5.72 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -32.21 328.32 -8.89 -41.10 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.01 Total: 2.50 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.19 Total: -12.64 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.30 Total: -38.40 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.21 -8.89 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596630953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.700 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds