Wall clock time and date at job start Mon Mar 30 2020 06:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47094 * 89.99954 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 O 1.21281 * 119.99736 * 240.00187 * 12 2 1 14 14 N 1.34779 * 120.00201 * 59.99469 * 12 2 1 15 15 C 1.46503 * 119.99606 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46575 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47060 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 180.02562 * 17 16 15 19 19 C 1.38237 * 119.99773 * 269.72358 * 18 17 16 20 20 C 1.38236 * 119.99746 * 179.76278 * 19 18 17 21 21 C 1.38240 * 119.99790 * 0.51661 * 20 19 18 22 22 C 1.38228 * 120.00363 * 359.74089 * 21 20 19 23 23 C 1.38234 * 120.00195 * 90.00079 * 18 17 16 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 28 28 H 0.96991 * 119.99747 * 0.02562 * 14 12 2 29 29 H 1.08992 * 109.47080 * 299.99586 * 15 14 12 30 30 H 1.09001 * 109.47138 * 60.00172 * 15 14 12 31 31 H 1.09002 * 109.47398 * 300.00091 * 16 15 14 32 32 H 1.09001 * 109.47194 * 60.00272 * 16 15 14 33 33 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 34 34 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 35 35 H 1.07997 * 120.00286 * 0.02562 * 19 18 17 36 36 H 1.08004 * 120.00147 * 180.22810 * 20 19 18 37 37 H 1.08005 * 119.99603 * 179.72078 * 21 20 19 38 38 H 1.07995 * 120.00333 * 179.97438 * 22 21 20 39 39 H 1.08007 * 119.99975 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1947 -0.9407 -3.6508 16 6 1.6842 -0.2197 -4.9000 17 6 2.1943 -0.9408 -6.1492 18 6 1.6919 -0.2303 -7.3797 19 6 0.4868 -0.5995 -7.9474 20 6 0.0237 0.0555 -9.0732 21 6 0.7708 1.0725 -9.6375 22 6 1.9784 1.4382 -9.0729 23 6 2.4390 0.7868 -7.9439 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7095 1.1617 3.4844 28 1 1.1494 0.5390 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8310 -1.9682 -3.6506 31 1 0.5942 -0.2197 -4.8996 32 1 2.0475 0.8080 -4.9003 33 1 3.2843 -0.9404 -6.1494 34 1 1.8314 -1.9686 -6.1492 35 1 -0.0949 -1.3969 -7.5090 36 1 -0.9196 -0.2305 -9.5147 37 1 0.4111 1.5813 -10.5197 38 1 2.5623 2.2325 -9.5139 39 1 3.3829 1.0720 -7.5032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596630953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:59 Heat of formation + Delta-G solvation = -57.060642 kcal Electronic energy + Delta-G solvation = -18367.427375 eV Core-core repulsion = 15466.016890 eV Total energy + Delta-G solvation = -2901.410485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59105 -40.10005 -36.82125 -35.75407 -34.43895 -32.56284 -31.71996 -30.78803 -27.24516 -26.86944 -24.35120 -23.41247 -22.90371 -21.84407 -20.87790 -18.37561 -17.77745 -17.59440 -16.80123 -16.77208 -16.31638 -15.95202 -15.80041 -15.16107 -14.73040 -14.45280 -14.23800 -14.18660 -13.82302 -13.54725 -13.16449 -12.97714 -12.92366 -12.66122 -12.61054 -12.48739 -12.19582 -12.01615 -11.99260 -11.72356 -11.59487 -11.03680 -10.60823 -10.30938 -9.94388 -9.77600 -9.55499 -8.14989 -6.25462 0.48634 0.54499 1.40843 1.41228 1.53505 1.94420 2.36761 2.55411 2.94091 3.14460 3.73910 3.93606 4.16375 4.19508 4.24064 4.33010 4.36532 4.46309 4.53238 4.68031 4.73938 4.75473 4.80953 4.90056 4.96375 5.03507 5.13466 5.18508 5.25442 5.30726 5.50481 5.61698 5.63823 5.67404 5.75959 5.78259 5.95010 6.17784 6.22364 6.75430 6.87550 7.40313 7.56199 8.90905 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.050319 B = 0.002945 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.319057 B = 9506.622410 C = 9686.909631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.727 5.727 15 C 0.119 3.881 16 C -0.108 4.108 17 C -0.074 4.074 18 C -0.090 4.090 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.022 0.978 27 H 0.265 0.735 28 H 0.410 0.590 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 2.419 -23.944 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.001 3.999 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.308 3.692 13 O -0.470 6.470 14 N -0.380 5.380 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.112 4.112 18 C -0.090 4.090 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.149 4.149 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.246 0.754 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.797 1.827 -23.742 23.880 hybrid contribution 0.141 -0.094 0.976 0.990 sum -1.656 1.734 -22.766 22.892 Atomic orbital electron populations 1.21558 0.95015 0.99409 1.01762 1.18816 0.95392 0.95924 0.89720 0.94108 1.21303 1.31575 1.12738 0.91228 0.93420 1.25605 0.95188 0.95783 1.01450 1.69947 1.37219 1.23609 1.24322 0.85590 0.78416 0.78757 0.79094 1.19965 1.19850 1.20406 1.21555 0.78225 0.83688 0.85762 1.90500 1.40095 1.28783 1.87636 1.46036 1.54378 1.32605 1.04997 1.21364 0.98717 0.96292 0.84098 1.21640 1.01726 0.99813 0.91409 1.20485 1.01452 0.99007 0.90274 1.19988 0.95311 0.96922 0.96772 1.21314 0.96058 1.00729 0.96747 1.21445 1.00550 0.96406 0.96208 1.21464 0.95181 0.97857 1.00788 1.21440 0.96826 1.00178 0.96167 1.21314 1.00495 0.96321 0.96736 0.91085 0.92876 0.95882 0.92576 0.75410 0.92850 0.92853 0.90564 0.90606 0.90240 0.90224 0.85273 0.84488 0.84365 0.84498 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.87 71.98 0.64 -4.85 16 2 C 0.02 1.16 2.64 -12.29 -0.03 1.12 16 3 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.53 -31.24 8.37 25.60 0.21 -31.02 16 5 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.66 11.32 21.44 0.24 -51.41 16 8 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.52 24.25 7.15 87.66 0.63 24.88 16 13 O -0.59 -32.21 15.46 -3.03 -0.05 -32.26 16 14 N -0.73 -24.78 5.45 -463.06 -2.52 -27.30 16 15 C 0.12 3.33 5.67 86.38 0.49 3.82 16 16 C -0.11 -2.12 5.31 30.59 0.16 -1.96 16 17 C -0.07 -1.28 5.35 29.85 0.16 -1.12 16 18 C -0.09 -1.59 5.13 -19.87 -0.10 -1.69 16 19 C -0.13 -2.20 9.70 22.27 0.22 -1.99 16 20 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 21 C -0.14 -1.95 10.05 22.27 0.22 -1.72 16 22 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 24 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 25 H 0.05 1.95 7.56 -2.39 -0.02 1.93 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 28 H 0.41 11.64 7.89 -92.71 -0.73 10.90 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -69.44 328.32 3.70 -65.74 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.29 Total: 16.25 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 3.71 Total: -18.45 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.28 Total: -78.72 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.44 3.70 -65.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596630953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.680 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds