Wall clock time and date at job start Mon Mar 30 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 C 1.50699 * 109.47289 * 120.00143 * 2 1 3 5 5 C 1.38308 * 119.96202 * 299.97783 * 4 2 1 6 6 C 1.38264 * 120.13666 * 179.97438 * 5 4 2 7 7 C 1.38135 * 120.07239 * 359.74869 * 6 5 4 8 8 C 1.38852 * 119.92780 * 0.52778 * 7 6 5 9 9 N 1.39920 * 120.07082 * 179.74672 * 8 7 6 10 10 C 1.34780 * 120.00126 * 326.44954 * 9 8 7 11 11 O 1.21291 * 119.99816 * 354.91826 * 10 9 8 12 12 C 1.50695 * 120.00537 * 174.91790 * 10 9 8 13 13 H 1.08999 * 109.47135 * 300.00241 * 12 10 9 14 14 C 1.53008 * 109.46840 * 59.99877 * 12 10 9 15 15 C 1.50696 * 109.47250 * 179.97438 * 12 10 9 16 16 H 1.07994 * 120.00287 * 359.97438 * 15 12 10 17 17 C 1.37885 * 119.99676 * 179.97438 * 15 12 10 18 18 N 1.31513 * 120.00005 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 119.99663 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47593 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47350 * 120.00414 * 19 17 15 22 22 H 1.48505 * 109.47026 * 239.99610 * 19 17 15 23 23 C 1.38090 * 119.96770 * 120.00482 * 4 2 1 24 24 H 1.08996 * 109.47306 * 60.00296 * 1 2 3 25 25 H 1.09006 * 109.46861 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47388 * 299.99820 * 1 2 3 27 27 H 1.08998 * 109.47388 * 240.00180 * 2 1 3 28 28 H 1.09000 * 109.47178 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47279 * 300.00621 * 3 2 1 30 30 H 1.09008 * 109.46845 * 60.00035 * 3 2 1 31 31 H 1.08000 * 119.93423 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.95833 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.03355 * 180.25278 * 7 6 5 34 34 H 0.96998 * 120.00357 * 146.72423 * 9 8 7 35 35 H 1.08999 * 109.46959 * 60.00257 * 14 12 10 36 36 H 1.08999 * 109.46567 * 180.02562 * 14 12 10 37 37 H 1.08996 * 109.46997 * 300.00142 * 14 12 10 38 38 H 0.97000 * 119.99958 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.03061 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6982 -0.2370 2.4862 6 6 2.1567 -0.8863 3.6176 7 6 2.9460 -2.0134 3.4967 8 6 3.2881 -2.4878 2.2374 9 7 4.0918 -3.6262 2.1115 10 6 5.0528 -3.8768 3.0228 11 8 5.2827 -3.0703 3.8990 12 6 5.8416 -5.1589 2.9530 13 1 5.1640 -6.0078 3.0446 14 6 6.5750 -5.2341 1.6122 15 6 6.8453 -5.1930 4.0766 16 1 6.9062 -4.3685 4.7715 17 6 7.6858 -6.2769 4.2175 18 7 7.6119 -7.2807 3.3710 19 14 8.9294 -6.3195 5.6106 20 1 8.8112 -5.0787 6.4179 21 1 8.6652 -7.4983 6.4742 22 1 10.3002 -6.4157 5.0477 23 6 2.8263 -1.8330 1.1029 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9564 0.8901 31 1 1.0778 0.6417 2.5834 32 1 1.8936 -0.5143 4.5968 33 1 3.3005 -2.5225 4.3808 34 1 3.9602 -4.2329 1.3663 35 1 7.2525 -4.3852 1.5206 36 1 7.1451 -6.1617 1.5616 37 1 5.8493 -5.2092 0.7993 38 1 8.2030 -8.0433 3.4703 39 1 3.0876 -2.2017 0.1219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596656097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:53 Heat of formation + Delta-G solvation = -33.346303 kcal Electronic energy + Delta-G solvation = -19134.361347 eV Core-core repulsion = 16233.979194 eV Total energy + Delta-G solvation = -2900.382154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06463 -38.46925 -35.55581 -33.85682 -33.69770 -30.74396 -30.05849 -28.51351 -27.26540 -25.19745 -23.75689 -22.76231 -22.04718 -20.23662 -19.02712 -17.10197 -16.32499 -16.20412 -15.63309 -15.11935 -14.58905 -14.27666 -14.21618 -13.60341 -13.57327 -13.43937 -13.05282 -12.60962 -12.46970 -12.13628 -11.99256 -11.56536 -11.52020 -11.27092 -11.06589 -10.91413 -10.72961 -10.72410 -10.67229 -10.33770 -10.01510 -9.80452 -9.02735 -8.75725 -8.53336 -8.37325 -7.68123 -6.08001 -4.11586 1.58595 1.61323 3.30128 3.37853 3.45711 3.50688 3.73079 4.10471 4.43981 4.64813 4.76508 5.09448 5.14282 5.25671 5.31510 5.38390 5.47987 5.58100 5.60942 5.68862 5.74003 5.84644 5.93139 6.05368 6.11312 6.13038 6.28951 6.52917 6.64241 6.67865 6.75155 6.80422 6.86120 6.92806 7.36205 7.43860 7.69617 7.90800 8.04517 8.31281 8.97327 9.04497 9.54322 10.99715 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041671 B = 0.004014 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.772678 B = 6974.468544 C = 7305.657303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.061 4.061 5 C -0.145 4.145 6 C -0.099 4.099 7 C -0.130 4.130 8 C 0.169 3.831 9 N -0.690 5.690 10 C 0.518 3.482 11 O -0.523 6.523 12 C 0.030 3.970 13 H 0.057 0.943 14 C -0.134 4.134 15 C -0.503 4.503 16 H 0.076 0.924 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.156 4.156 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.407 0.593 35 H 0.033 0.967 36 H 0.095 0.905 37 H 0.012 0.988 38 H 0.261 0.739 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 11.278 -7.643 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.062 4.062 5 C -0.164 4.164 6 C -0.117 4.117 7 C -0.150 4.150 8 C 0.073 3.927 9 N -0.335 5.335 10 C 0.309 3.691 11 O -0.396 6.396 12 C 0.009 3.991 13 H 0.074 0.926 14 C -0.192 4.192 15 C -0.541 4.541 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.242 0.758 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.638 11.607 -6.995 18.530 hybrid contribution 0.674 -0.458 0.288 0.864 sum -11.965 11.148 -6.707 17.676 Atomic orbital electron populations 1.21845 0.94485 1.01971 1.01666 1.20093 0.95774 0.95971 0.95494 1.21850 1.01410 0.95160 1.01642 1.19528 0.97224 0.94917 0.94544 1.20791 1.02725 1.00968 0.91921 1.20977 0.97130 0.95266 0.98348 1.21234 0.98423 0.98189 0.97185 1.17914 0.92102 0.88995 0.93692 1.44159 1.34733 1.24207 1.30423 1.22278 0.77671 0.89959 0.79149 1.90552 1.66050 1.48098 1.34939 1.18925 0.94798 0.88413 0.96949 0.92551 1.21774 0.99465 1.03980 0.94026 1.21166 1.16919 1.04747 1.11286 0.90631 1.24951 0.97426 0.95300 0.96521 1.69873 1.39175 1.07993 1.36468 0.86381 0.80727 0.78097 0.81968 1.19522 1.20998 1.20997 1.20766 1.02742 0.96908 0.97249 0.92651 0.92537 0.92460 0.90646 0.92466 0.92633 0.92458 0.86657 0.86200 0.84757 0.75776 0.94830 0.88596 0.96886 0.92927 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.01 37.16 0.33 -0.86 16 2 C -0.05 -0.54 3.09 -91.77 -0.28 -0.82 16 3 C -0.14 -1.29 9.01 37.16 0.33 -0.95 16 4 C -0.06 -0.78 4.78 -104.65 -0.50 -1.28 16 5 C -0.15 -1.85 8.71 -39.55 -0.34 -2.19 16 6 C -0.10 -1.42 10.04 -39.61 -0.40 -1.82 16 7 C -0.13 -2.28 8.66 -39.39 -0.34 -2.62 16 8 C 0.17 2.89 6.28 -83.70 -0.53 2.37 16 9 N -0.69 -12.49 5.27 -9.86 -0.05 -12.54 16 10 C 0.52 11.77 6.89 -10.99 -0.08 11.69 16 11 O -0.52 -13.42 13.15 5.55 0.07 -13.34 16 12 C 0.03 0.74 2.65 -92.92 -0.25 0.49 16 13 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 14 C -0.13 -3.04 8.86 37.16 0.33 -2.71 16 15 C -0.50 -14.10 8.37 -34.44 -0.29 -14.39 16 16 H 0.08 2.24 6.75 -52.49 -0.35 1.89 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.90 -24.86 11.32 55.43 0.63 -24.24 16 19 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 C -0.16 -2.23 9.58 -39.39 -0.38 -2.61 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 27 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 7.38 -51.92 -0.38 0.12 16 31 H 0.12 1.20 7.09 -52.49 -0.37 0.83 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.13 2.65 6.43 -52.49 -0.34 2.31 16 34 H 0.41 6.20 8.09 -40.82 -0.33 5.87 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 37 H 0.01 0.23 7.45 -51.93 -0.39 -0.16 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.12 1.49 7.94 -52.49 -0.42 1.07 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -30.37 319.52 -7.82 -38.19 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.78 Total: 4.66 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.48 Total: -14.18 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.58 Total: -36.78 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.07 Total: -13.34 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.37 -7.82 -38.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596656097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.845 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds