Wall clock time and date at job start Mon Mar 30 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 C 1.50690 * 109.47278 * 239.99380 * 2 1 3 5 5 H 1.08002 * 120.00210 * 240.00481 * 4 2 1 6 6 C 1.37878 * 119.99820 * 60.00486 * 4 2 1 7 7 N 1.31512 * 120.00036 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00010 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46942 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47020 * 119.99661 * 8 6 4 11 11 H 1.48502 * 109.46685 * 239.99953 * 8 6 4 12 12 C 1.50706 * 109.46779 * 119.99417 * 2 1 3 13 13 O 1.21281 * 119.99699 * 119.99828 * 12 2 1 14 14 N 1.34773 * 120.00080 * 300.00319 * 12 2 1 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47237 * 179.72043 * 15 14 12 17 17 H 1.09004 * 109.46916 * 55.00034 * 16 15 14 18 18 C 1.53000 * 109.47247 * 295.00112 * 16 15 14 19 19 C 1.50702 * 109.46895 * 174.99627 * 16 15 14 20 20 C 1.38228 * 119.99812 * 59.72995 * 19 16 15 21 21 C 1.38233 * 120.00007 * 179.80409 * 20 19 16 22 22 C 1.38244 * 119.99939 * 0.40093 * 21 20 19 23 23 C 1.38228 * 119.99704 * 359.85290 * 22 21 20 24 24 C 1.38237 * 119.99599 * 239.99762 * 19 16 15 25 25 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47281 * 300.00632 * 1 2 3 27 27 H 1.09002 * 109.46837 * 60.00443 * 1 2 3 28 28 H 0.97005 * 119.99861 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00161 * 359.72088 * 14 12 2 30 30 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 31 31 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 32 32 H 1.08997 * 109.46764 * 299.99787 * 18 16 15 33 33 H 1.08994 * 109.47418 * 59.99707 * 18 16 15 34 34 H 1.08995 * 109.46959 * 179.97438 * 18 16 15 35 35 H 1.07994 * 120.00301 * 359.97438 * 20 19 16 36 36 H 1.08001 * 120.00548 * 180.23129 * 21 20 19 37 37 H 1.08000 * 119.99981 * 179.82774 * 22 21 20 38 38 H 1.08005 * 120.00297 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.00627 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1465 -2.2873 -3.6035 10 1 1.1662 -1.5870 -4.8159 11 1 3.1468 -0.1877 -4.8163 12 6 2.0323 -0.7103 1.2306 13 8 2.7295 -1.6965 1.1194 14 7 1.7066 -0.2498 2.4546 15 6 2.1954 -0.9400 3.6509 16 6 1.6909 -0.2147 4.9001 17 1 0.6048 -0.1327 4.8588 18 6 2.3061 1.1848 4.9606 19 6 2.0897 -0.9924 6.1278 20 6 3.4256 -1.2310 6.3911 21 6 3.7916 -1.9408 7.5194 22 6 2.8213 -2.4191 8.3801 23 6 1.4853 -2.1850 8.1140 24 6 1.1193 -1.4717 6.9877 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7090 1.1611 -3.4845 29 1 1.1523 0.5413 2.5436 30 1 1.8284 -1.9664 3.6535 31 1 3.2853 -0.9440 3.6483 32 1 3.3922 1.1028 5.0018 33 1 2.0177 1.7472 4.0726 34 1 1.9464 1.7017 5.8502 35 1 4.1834 -0.8605 5.7168 36 1 4.8355 -2.1240 7.7271 37 1 3.1072 -2.9761 9.2601 38 1 0.7271 -2.5590 8.7862 39 1 0.0755 -1.2887 6.7800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596659553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:30 Heat of formation + Delta-G solvation = -52.367010 kcal Electronic energy + Delta-G solvation = -18959.034036 eV Core-core repulsion = 16057.827083 eV Total energy + Delta-G solvation = -2901.206954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85014 -40.10567 -37.05157 -35.75829 -34.12510 -32.36133 -31.77040 -30.17820 -27.57690 -27.14841 -24.68882 -23.81922 -23.18613 -21.30164 -20.85063 -18.36810 -17.94776 -17.58929 -16.85459 -16.50242 -16.26468 -15.92700 -15.64121 -14.96754 -14.76750 -14.50162 -14.39465 -14.13277 -13.84110 -13.57430 -13.35246 -12.98060 -12.92088 -12.69719 -12.58316 -12.33737 -12.18320 -12.15570 -12.02704 -11.73132 -11.60981 -11.02462 -10.61027 -10.31614 -9.96250 -9.78709 -9.59937 -8.15075 -6.25228 0.45631 0.53027 1.39284 1.41208 1.54884 1.94254 2.35825 2.53930 2.91387 3.14389 3.73565 3.79403 4.04327 4.17074 4.19906 4.31738 4.36404 4.43556 4.63119 4.66194 4.73811 4.76219 4.85253 4.94581 4.96569 5.03390 5.10970 5.16132 5.20514 5.31674 5.50936 5.57559 5.63237 5.65544 5.74876 5.76065 5.95240 6.14858 6.22656 6.75339 6.87416 7.40501 7.55871 8.90900 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041657 B = 0.003649 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.998582 B = 7670.613361 C = 7927.201696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.591 6.591 14 N -0.722 5.722 15 C 0.132 3.868 16 C -0.051 4.051 17 H 0.098 0.902 18 C -0.142 4.142 19 C -0.085 4.085 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.021 0.979 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.410 0.590 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 0.107 22.053 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.061 0.939 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.308 3.692 13 O -0.471 6.471 14 N -0.376 5.376 15 C 0.008 3.992 16 C -0.070 4.070 17 H 0.116 0.884 18 C -0.199 4.199 19 C -0.086 4.086 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.272 -0.478 21.849 21.856 hybrid contribution 0.245 -0.162 -1.056 1.096 sum -0.027 -0.639 20.794 20.804 Atomic orbital electron populations 1.21558 0.94964 0.99391 1.01828 1.18814 0.95408 0.95957 0.89549 0.93923 1.21332 1.31536 1.12691 0.91259 0.93520 1.25588 0.95198 0.95763 1.01383 1.69951 1.37224 1.23584 1.24246 0.85553 0.78371 0.78588 0.79432 1.20574 1.19852 1.19887 1.21588 0.78198 0.83687 0.85712 1.90507 1.40102 1.28838 1.87615 1.45993 1.54486 1.32411 1.04698 1.21306 0.98456 0.95583 0.83821 1.20288 1.01837 0.95029 0.89832 0.88398 1.21853 1.00926 0.94421 1.02744 1.19781 0.93861 0.98873 0.96064 1.21202 0.95909 0.99575 0.97998 1.21418 1.00642 0.98006 0.94620 1.21481 0.93132 1.00030 1.00187 1.21461 0.96942 0.98472 0.97483 1.21340 0.99702 0.98297 0.94933 0.95967 0.92768 0.91044 0.92583 0.75274 0.93631 0.93043 0.92698 0.91839 0.90884 0.86300 0.84641 0.84052 0.83947 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.21 2.64 -12.29 -0.03 1.18 16 3 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.53 -31.21 8.37 25.60 0.21 -31.00 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.34 11.32 21.45 0.24 -51.10 16 8 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 9 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.52 24.31 7.15 87.66 0.63 24.94 16 13 O -0.59 -32.56 15.46 -3.03 -0.05 -32.60 16 14 N -0.72 -24.66 5.17 -463.05 -2.40 -27.05 16 15 C 0.13 3.94 4.80 86.38 0.41 4.36 16 16 C -0.05 -1.08 2.60 -11.54 -0.03 -1.11 16 17 H 0.10 1.82 7.88 -2.38 -0.02 1.80 16 18 C -0.14 -2.70 8.88 71.98 0.64 -2.06 16 19 C -0.09 -1.80 4.78 -19.87 -0.09 -1.89 16 20 C -0.13 -2.74 8.76 22.27 0.20 -2.55 16 21 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 22 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 24 C -0.12 -2.31 9.67 22.27 0.22 -2.10 16 25 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 1.96 7.57 -2.39 -0.02 1.94 16 27 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 28 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 29 H 0.41 11.50 7.08 -92.70 -0.66 10.84 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.66 7.55 -2.39 -0.02 1.64 16 32 H 0.05 1.09 7.41 -2.39 -0.02 1.07 16 33 H 0.06 1.20 7.18 -2.39 -0.02 1.19 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 2.52 7.16 -2.91 -0.02 2.50 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.14 2.04 7.95 -2.91 -0.02 2.01 16 Total: -1.00 -69.49 322.43 4.11 -65.38 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.38 Total: 17.30 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.91 Total: -19.35 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -2.15 Total: -78.15 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.60 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.49 4.11 -65.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596659553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.011 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds