Wall clock time and date at job start Mon Mar 30 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47318 * 120.00205 * 2 1 3 5 5 H 1.08001 * 120.00685 * 120.00097 * 4 2 1 6 6 C 1.37880 * 119.99848 * 299.99999 * 4 2 1 7 7 N 1.31516 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00121 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46686 * 60.00168 * 8 6 4 10 10 H 1.48495 * 109.47118 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47086 * 300.00325 * 8 6 4 12 12 C 1.50701 * 109.47162 * 240.00142 * 2 1 3 13 13 O 1.21284 * 119.99998 * 239.99664 * 12 2 1 14 14 N 1.34769 * 120.00254 * 60.00145 * 12 2 1 15 15 C 1.46501 * 120.00474 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47381 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.47141 * 304.99689 * 16 15 14 18 18 C 1.53003 * 109.47504 * 64.99292 * 16 15 14 19 19 C 1.50702 * 109.47401 * 184.99777 * 16 15 14 20 20 C 1.38234 * 120.00271 * 119.99302 * 19 16 15 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99485 * 299.97430 * 19 16 15 25 25 H 1.08996 * 109.47471 * 60.00240 * 1 2 3 26 26 H 1.09008 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47202 * 299.99665 * 1 2 3 28 28 H 0.96997 * 119.99710 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00049 * 359.97438 * 14 12 2 30 30 H 1.08993 * 109.47543 * 59.99015 * 15 14 12 31 31 H 1.09003 * 109.46590 * 299.99140 * 15 14 12 32 32 H 1.09004 * 109.47146 * 180.02562 * 18 16 15 33 33 H 1.08997 * 109.46909 * 300.00295 * 18 16 15 34 34 H 1.09005 * 109.47050 * 60.00348 * 18 16 15 35 35 H 1.08001 * 119.99769 * 359.97438 * 20 19 16 36 36 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 38 38 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00489 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.8064 -1.1209 4.0081 10 1 1.8270 -0.4200 5.2204 11 1 1.8259 -2.5202 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6964 -1.1192 14 7 1.7068 -0.2499 -2.4545 15 6 2.1947 -0.9408 -3.6508 16 6 1.6843 -0.2198 -4.9000 17 1 0.5979 -0.1416 -4.8560 18 6 2.2942 1.1819 -4.9649 19 6 2.0825 -0.9984 -6.1273 20 6 1.1116 -1.4831 -6.9836 21 6 1.4770 -2.1967 -8.1097 22 6 2.8133 -2.4252 -8.3798 23 6 3.7842 -1.9396 -7.5240 24 6 3.4188 -1.2274 -6.3970 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7087 1.1611 3.4844 29 1 1.1488 0.5385 -2.5436 30 1 1.8311 -1.9683 -3.6506 31 1 3.2847 -0.9411 -3.6509 32 1 1.9302 1.6956 -5.8547 33 1 2.0061 1.7449 -4.0772 34 1 3.3806 1.1037 -5.0090 35 1 0.0676 -1.3042 -6.7728 36 1 0.7185 -2.5751 -8.7789 37 1 3.0986 -2.9866 -9.2572 38 1 4.8283 -2.1185 -7.7348 39 1 4.1774 -0.8489 -5.7280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596659554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:32 Heat of formation + Delta-G solvation = -33.618794 kcal Electronic energy + Delta-G solvation = -18957.545587 eV Core-core repulsion = 16057.151617 eV Total energy + Delta-G solvation = -2900.393970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75357 -38.64236 -35.85149 -33.68817 -32.71396 -31.03985 -30.43187 -29.28543 -26.30617 -25.09604 -23.49989 -22.72283 -21.95955 -20.16023 -19.31149 -16.96911 -16.35285 -15.97329 -15.62838 -15.15201 -14.84171 -14.50808 -14.35601 -13.77580 -13.49147 -13.32389 -13.23574 -12.69070 -12.64284 -12.24080 -12.14694 -11.55484 -11.41434 -11.17759 -10.98415 -10.93401 -10.76347 -10.69013 -10.64347 -10.21262 -9.92872 -9.04262 -8.95471 -8.85449 -8.55327 -8.37762 -8.27973 -6.00184 -4.03085 1.22517 1.27947 3.38513 3.40566 3.46338 3.64014 3.79709 3.96693 4.49535 4.63100 4.68685 4.87022 4.95159 5.01918 5.09236 5.30504 5.33038 5.36722 5.43248 5.72203 5.75199 5.87116 5.92454 5.99285 6.04944 6.15258 6.32952 6.38563 6.39301 6.55280 6.64911 6.86142 6.87576 6.96405 7.13951 7.51216 7.79021 8.02622 8.19150 8.50078 9.05848 9.30163 9.62437 11.07466 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041648 B = 0.003649 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.135446 B = 7671.837427 C = 7927.528743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.547 6.547 14 N -0.746 5.746 15 C 0.130 3.870 16 C -0.065 4.065 17 H 0.084 0.916 18 C -0.144 4.144 19 C -0.069 4.069 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.011 0.989 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.261 0.739 29 H 0.395 0.605 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -0.190 -20.566 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.423 6.423 14 N -0.401 5.401 15 C 0.005 3.995 16 C -0.083 4.083 17 H 0.102 0.898 18 C -0.201 4.201 19 C -0.070 4.070 20 C -0.134 4.134 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.129 4.129 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.229 0.771 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.497 -0.810 -20.319 20.341 hybrid contribution 0.004 -0.096 0.676 0.683 sum 0.502 -0.906 -19.643 19.670 Atomic orbital electron populations 1.21739 0.96601 0.99779 1.00870 1.18859 0.94104 0.96804 0.89412 0.93054 1.21124 1.30933 1.12798 0.89064 0.90859 1.24950 0.95137 0.95078 0.99087 1.69863 1.37151 1.23147 1.23586 0.86510 0.79283 0.79729 0.81638 1.20200 1.21401 1.20204 1.21963 0.78482 0.84281 0.84488 1.90529 1.38025 1.26936 1.86823 1.46299 1.55549 1.32670 1.05594 1.21201 0.98971 0.95951 0.83342 1.20402 1.01200 0.94978 0.91768 0.89781 1.21862 1.01189 0.95026 1.02039 1.19761 0.93479 0.97951 0.95811 1.21093 0.99160 0.98359 0.94758 1.21119 0.96205 0.99079 0.97474 1.21132 0.93198 1.00467 0.99733 1.21151 0.99442 0.98234 0.94886 1.21081 0.95796 0.98773 0.97296 0.96958 0.95043 0.88871 0.92947 0.77099 0.92185 0.92058 0.92491 0.91726 0.92247 0.86049 0.86213 0.86337 0.86141 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.74 2.64 -92.93 -0.25 0.49 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.42 8.37 -34.44 -0.29 -14.71 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 12.01 7.15 -10.99 -0.08 11.93 16 13 O -0.55 -14.63 15.46 5.55 0.09 -14.55 16 14 N -0.75 -13.02 5.18 -60.30 -0.31 -13.33 16 15 C 0.13 1.96 4.80 -4.04 -0.02 1.94 16 16 C -0.06 -0.73 2.60 -91.77 -0.24 -0.97 16 17 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 18 C -0.14 -1.49 8.88 37.16 0.33 -1.16 16 19 C -0.07 -0.78 4.78 -104.62 -0.50 -1.28 16 20 C -0.12 -1.19 9.67 -39.59 -0.38 -1.57 16 21 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 22 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 24 C -0.11 -1.22 8.76 -39.58 -0.35 -1.57 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 26 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 5.91 7.07 -40.82 -0.29 5.62 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.97 7.57 -51.93 -0.39 0.58 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.68 7.18 -51.93 -0.37 0.30 16 34 H 0.06 0.62 7.39 -51.93 -0.38 0.23 16 35 H 0.12 1.07 7.95 -52.49 -0.42 0.65 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.29 7.16 -52.49 -0.38 0.91 16 LS Contribution 322.42 15.07 4.86 4.86 Total: -1.00 -31.91 322.42 -8.29 -40.20 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.80 Total: 3.33 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.73 Total: -12.77 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.32 Total: -38.11 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.09 Total: -14.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.91 -8.29 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596659554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.580 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds