Wall clock time and date at job start Mon Mar 30 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47318 * 120.00205 * 2 1 3 5 5 H 1.08001 * 120.00685 * 120.00097 * 4 2 1 6 6 C 1.37880 * 119.99848 * 299.99999 * 4 2 1 7 7 N 1.31516 * 120.00098 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00121 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46686 * 60.00168 * 8 6 4 10 10 H 1.48495 * 109.47118 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47086 * 300.00325 * 8 6 4 12 12 C 1.50701 * 109.47162 * 240.00142 * 2 1 3 13 13 O 1.21284 * 119.99998 * 239.99664 * 12 2 1 14 14 N 1.34769 * 120.00254 * 60.00145 * 12 2 1 15 15 C 1.46501 * 120.00474 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47381 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.47141 * 304.99689 * 16 15 14 18 18 C 1.53003 * 109.47504 * 64.99292 * 16 15 14 19 19 C 1.50702 * 109.47401 * 184.99777 * 16 15 14 20 20 C 1.38234 * 120.00271 * 119.99302 * 19 16 15 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99485 * 299.97430 * 19 16 15 25 25 H 1.08996 * 109.47471 * 60.00240 * 1 2 3 26 26 H 1.09008 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47202 * 299.99665 * 1 2 3 28 28 H 0.96997 * 119.99710 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00049 * 359.97438 * 14 12 2 30 30 H 1.08993 * 109.47543 * 59.99015 * 15 14 12 31 31 H 1.09003 * 109.46590 * 299.99140 * 15 14 12 32 32 H 1.09004 * 109.47146 * 180.02562 * 18 16 15 33 33 H 1.08997 * 109.46909 * 300.00295 * 18 16 15 34 34 H 1.09005 * 109.47050 * 60.00348 * 18 16 15 35 35 H 1.08001 * 119.99769 * 359.97438 * 20 19 16 36 36 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 38 38 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00489 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.8064 -1.1209 4.0081 10 1 1.8270 -0.4200 5.2204 11 1 1.8259 -2.5202 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6964 -1.1192 14 7 1.7068 -0.2499 -2.4545 15 6 2.1947 -0.9408 -3.6508 16 6 1.6843 -0.2198 -4.9000 17 1 0.5979 -0.1416 -4.8560 18 6 2.2942 1.1819 -4.9649 19 6 2.0825 -0.9984 -6.1273 20 6 1.1116 -1.4831 -6.9836 21 6 1.4770 -2.1967 -8.1097 22 6 2.8133 -2.4252 -8.3798 23 6 3.7842 -1.9396 -7.5240 24 6 3.4188 -1.2274 -6.3970 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7087 1.1611 3.4844 29 1 1.1488 0.5385 -2.5436 30 1 1.8311 -1.9683 -3.6506 31 1 3.2847 -0.9411 -3.6509 32 1 1.9302 1.6956 -5.8547 33 1 2.0061 1.7449 -4.0772 34 1 3.3806 1.1037 -5.0090 35 1 0.0676 -1.3042 -6.7728 36 1 0.7185 -2.5751 -8.7789 37 1 3.0986 -2.9866 -9.2572 38 1 4.8283 -2.1185 -7.7348 39 1 4.1774 -0.8489 -5.7280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596659554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:32 Heat of formation + Delta-G solvation = -52.274631 kcal Electronic energy + Delta-G solvation = -18958.354565 eV Core-core repulsion = 16057.151617 eV Total energy + Delta-G solvation = -2901.202948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84978 -40.10569 -37.05131 -35.75676 -34.12544 -32.36155 -31.77075 -30.17651 -27.57616 -27.14639 -24.68946 -23.81810 -23.18622 -21.30117 -20.85052 -18.36305 -17.94725 -17.58770 -16.85205 -16.50282 -16.27073 -15.92504 -15.64275 -14.96777 -14.76937 -14.50093 -14.38809 -14.13197 -13.84096 -13.56594 -13.34755 -12.97866 -12.92042 -12.71582 -12.58546 -12.33980 -12.18522 -12.15215 -12.00467 -11.73126 -11.60993 -11.04328 -10.60880 -10.31533 -9.96256 -9.78717 -9.59919 -8.14757 -6.25134 0.45632 0.53048 1.41219 1.42780 1.51401 1.94231 2.35674 2.53985 2.91415 3.14709 3.73599 3.79396 4.04313 4.17097 4.19915 4.31747 4.36398 4.43536 4.63157 4.66199 4.73794 4.76166 4.85233 4.94605 4.96512 5.03380 5.10983 5.16139 5.20527 5.31668 5.50810 5.57558 5.63220 5.65554 5.74882 5.75953 5.95207 6.14864 6.22702 6.75010 6.87217 7.40390 7.55818 8.90877 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041648 B = 0.003649 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.135446 B = 7671.837427 C = 7927.528743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.591 6.591 14 N -0.722 5.722 15 C 0.132 3.868 16 C -0.051 4.051 17 H 0.098 0.902 18 C -0.142 4.142 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.129 4.129 25 H 0.053 0.947 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.410 0.590 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 0.071 -22.054 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.471 6.471 14 N -0.376 5.376 15 C 0.008 3.992 16 C -0.070 4.070 17 H 0.116 0.884 18 C -0.199 4.199 19 C -0.086 4.086 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.147 4.147 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.276 -0.506 -21.846 21.854 hybrid contribution 0.247 -0.176 1.048 1.091 sum -0.029 -0.682 -20.798 20.809 Atomic orbital electron populations 1.21559 0.94977 0.99379 1.01830 1.18803 0.95394 0.95946 0.89533 0.93943 1.21283 1.31698 1.12790 0.91276 0.93474 1.25588 0.95175 0.95752 1.01371 1.69937 1.37125 1.23551 1.24383 0.85664 0.78675 0.78742 0.78876 1.20201 1.19818 1.20211 1.21585 0.78215 0.83674 0.85708 1.90506 1.40111 1.28820 1.87617 1.45991 1.54337 1.32560 1.04700 1.21304 0.98463 0.95579 0.83817 1.20288 1.01819 0.95040 0.89841 0.88412 1.21857 1.00959 0.94390 1.02740 1.19782 0.93863 0.98878 0.96062 1.21336 0.99703 0.98286 0.94952 1.21458 0.96945 0.98495 0.97459 1.21481 0.93125 1.00020 1.00206 1.21418 1.00642 0.97979 0.94646 1.21207 0.95899 0.99585 0.97985 0.92768 0.95984 0.91038 0.92557 0.75278 0.93641 0.93024 0.90890 0.91837 0.92685 0.84677 0.83952 0.84054 0.84637 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.87 71.98 0.64 -4.82 16 2 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.53 -31.34 8.37 25.60 0.21 -31.13 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -51.42 11.32 21.45 0.24 -51.18 16 8 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 C 0.52 24.30 7.15 87.66 0.63 24.93 16 13 O -0.59 -32.50 15.46 -3.04 -0.05 -32.55 16 14 N -0.72 -24.66 5.18 -463.07 -2.40 -27.05 16 15 C 0.13 3.94 4.80 86.38 0.42 4.36 16 16 C -0.05 -1.08 2.60 -11.54 -0.03 -1.11 16 17 H 0.10 1.82 7.88 -2.38 -0.02 1.80 16 18 C -0.14 -2.69 8.88 71.98 0.64 -2.05 16 19 C -0.09 -1.80 4.78 -19.87 -0.09 -1.89 16 20 C -0.12 -2.31 9.67 22.27 0.22 -2.10 16 21 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 22 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 23 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 24 C -0.13 -2.74 8.76 22.27 0.20 -2.54 16 25 H 0.05 1.96 7.56 -2.39 -0.02 1.94 16 26 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 28 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.41 11.50 7.07 -92.71 -0.66 10.85 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.66 7.57 -2.39 -0.02 1.64 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.20 7.18 -2.39 -0.02 1.19 16 34 H 0.05 1.09 7.39 -2.38 -0.02 1.07 16 35 H 0.14 2.04 7.95 -2.91 -0.02 2.02 16 36 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.12 2.51 7.16 -2.91 -0.02 2.49 16 Total: -1.00 -69.33 322.42 4.11 -65.22 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.38 Total: 17.57 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.91 Total: -19.43 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -2.15 Total: -78.23 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.55 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.33 4.11 -65.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596659554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.943 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds