Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47301 * 239.99816 * 2 1 3 5 5 H 1.07999 * 119.99800 * 239.99985 * 4 2 1 6 6 C 1.37874 * 119.99937 * 60.00354 * 4 2 1 7 7 N 1.31514 * 120.00072 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00042 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47450 * 89.99430 * 8 6 4 10 10 H 1.48502 * 109.46943 * 209.99804 * 8 6 4 11 11 H 1.48501 * 109.47128 * 329.99328 * 8 6 4 12 12 C 1.50706 * 109.47238 * 119.99481 * 2 1 3 13 13 O 1.21281 * 119.99372 * 119.99921 * 12 2 1 14 14 N 1.34773 * 120.00130 * 300.00815 * 12 2 1 15 15 C 1.46504 * 119.99935 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.46822 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.46929 * 304.98951 * 16 15 14 18 18 C 1.52997 * 109.47317 * 64.99847 * 16 15 14 19 19 C 1.50706 * 109.46573 * 184.99772 * 16 15 14 20 20 C 1.38232 * 120.00143 * 299.72250 * 19 16 15 21 21 C 1.38232 * 120.00231 * 179.79026 * 20 19 16 22 22 C 1.38236 * 119.99863 * 0.44175 * 21 20 19 23 23 C 1.38242 * 120.00159 * 359.81528 * 22 21 20 24 24 C 1.38233 * 120.00058 * 119.99965 * 19 16 15 25 25 H 1.09004 * 109.47485 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47487 * 299.99875 * 1 2 3 27 27 H 1.09000 * 109.47095 * 60.00090 * 1 2 3 28 28 H 0.97003 * 120.00093 * 180.02562 * 7 6 4 29 29 H 0.96995 * 120.00037 * 359.97438 * 14 12 2 30 30 H 1.08994 * 109.47386 * 59.99336 * 15 14 12 31 31 H 1.08998 * 109.46411 * 299.99658 * 15 14 12 32 32 H 1.09002 * 109.47153 * 299.99641 * 18 16 15 33 33 H 1.09001 * 109.46832 * 179.97438 * 18 16 15 34 34 H 1.09004 * 109.47261 * 59.99813 * 18 16 15 35 35 H 1.08002 * 119.99951 * 359.97438 * 20 19 16 36 36 H 1.07993 * 120.00314 * 180.27371 * 21 20 19 37 37 H 1.08003 * 120.00025 * 179.83335 * 22 21 20 38 38 H 1.07990 * 120.00277 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.99547 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 6 2.0323 -0.7103 1.2306 13 8 2.7295 -1.6964 1.1192 14 7 1.7066 -0.2499 2.4546 15 6 2.1945 -0.9408 3.6508 16 6 1.6850 -0.2191 4.9000 17 1 1.9742 0.8309 4.8563 18 6 0.1601 -0.3260 4.9645 19 6 2.2855 -0.8548 6.1274 20 6 2.0509 -2.1896 6.3995 21 6 2.6052 -2.7738 7.5230 22 6 3.3868 -2.0209 8.3792 23 6 3.6172 -0.6847 8.1099 24 6 3.0664 -0.1017 6.9841 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7082 1.1608 -3.4844 29 1 1.1492 0.5389 2.5436 30 1 3.2845 -0.9412 3.6510 31 1 1.8308 -1.9683 3.6506 32 1 -0.2742 0.1338 4.0767 33 1 -0.2027 0.1878 5.8547 34 1 -0.1290 -1.3761 5.0082 35 1 1.4368 -2.7768 5.7328 36 1 2.4255 -3.8177 7.7333 37 1 3.8178 -2.4767 9.2584 38 1 4.2281 -0.0966 8.7786 39 1 3.2464 0.9422 6.7736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596659556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = -33.640775 kcal Electronic energy + Delta-G solvation = -18969.463312 eV Core-core repulsion = 16069.068389 eV Total energy + Delta-G solvation = -2900.394923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75385 -38.64294 -35.85016 -33.68990 -32.71394 -31.04022 -30.43191 -29.28815 -26.29902 -25.09521 -23.51085 -22.72111 -21.95910 -20.15998 -19.30650 -16.96272 -16.34277 -16.03154 -15.63236 -15.09154 -14.84169 -14.51707 -14.35945 -13.72680 -13.58702 -13.36935 -13.14653 -12.68875 -12.59693 -12.34891 -12.09428 -11.55438 -11.38591 -11.20296 -11.00927 -10.93157 -10.77036 -10.67930 -10.61252 -10.22319 -9.92866 -9.04288 -8.94318 -8.85431 -8.55755 -8.37612 -8.28331 -6.00373 -4.03181 1.22505 1.27929 3.35816 3.41301 3.48549 3.64018 3.79745 3.96691 4.49592 4.63155 4.68671 4.87044 4.95142 5.01972 5.09329 5.30577 5.32947 5.36696 5.43261 5.72440 5.75585 5.87168 5.92488 5.99407 6.05003 6.15517 6.32993 6.38509 6.39117 6.55330 6.64733 6.85867 6.87544 6.96222 7.13928 7.51115 7.78837 8.02626 8.19061 8.50025 9.06173 9.30173 9.62429 11.07303 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041973 B = 0.003654 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.935720 B = 7660.771561 C = 7942.947721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.547 6.547 14 N -0.746 5.746 15 C 0.130 3.870 16 C -0.065 4.065 17 H 0.084 0.916 18 C -0.144 4.144 19 C -0.069 4.069 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.116 4.116 25 H 0.030 0.970 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.395 0.605 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -0.436 20.582 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.308 3.692 13 O -0.423 6.423 14 N -0.401 5.401 15 C 0.005 3.995 16 C -0.083 4.083 17 H 0.102 0.898 18 C -0.201 4.201 19 C -0.070 4.070 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.134 4.134 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.229 0.771 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.171 -1.060 20.338 20.366 hybrid contribution 0.054 -0.042 -0.682 0.686 sum 0.225 -1.102 19.655 19.688 Atomic orbital electron populations 1.21735 0.96583 0.99764 1.00865 1.18870 0.94116 0.96819 0.89432 0.93056 1.21163 1.30858 1.12750 0.89047 0.90805 1.24950 0.95169 0.95067 0.99100 1.69872 1.37238 1.23151 1.23474 0.86457 0.79470 0.79242 0.82080 1.20692 1.21319 1.19744 1.21964 0.78466 0.84300 0.84488 1.90529 1.37983 1.26968 1.86818 1.46299 1.55577 1.32646 1.05595 1.21202 0.98885 0.96037 0.83341 1.20401 0.96148 1.00021 0.91769 0.89784 1.21861 0.93743 1.02476 1.02036 1.19762 0.97369 0.94075 0.95795 1.21079 0.99912 0.94627 0.97328 1.21148 0.97809 0.99815 0.94933 1.21135 0.99266 0.94434 0.99699 1.21121 0.99998 0.95267 0.97491 1.21093 0.97669 0.99872 0.94743 0.95045 0.96965 0.88882 0.93010 0.77100 0.92172 0.92069 0.91703 0.92502 0.92259 0.85886 0.86142 0.86338 0.86212 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.15 0.33 -2.70 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.48 16 3 H 0.05 1.33 8.14 -51.92 -0.42 0.91 16 4 C -0.50 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.52 12.00 7.15 -10.98 -0.08 11.92 16 13 O -0.55 -14.63 15.46 5.56 0.09 -14.55 16 14 N -0.75 -13.01 5.18 -60.29 -0.31 -13.33 16 15 C 0.13 1.96 4.81 -4.04 -0.02 1.94 16 16 C -0.06 -0.73 2.60 -91.77 -0.24 -0.97 16 17 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 18 C -0.14 -1.49 8.88 37.16 0.33 -1.16 16 19 C -0.07 -0.78 4.78 -104.62 -0.50 -1.28 16 20 C -0.11 -1.22 8.76 -39.59 -0.35 -1.57 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.19 9.67 -39.58 -0.38 -1.57 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 5.91 7.07 -40.82 -0.29 5.62 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.98 7.59 -51.93 -0.39 0.58 16 32 H 0.06 0.69 7.18 -51.93 -0.37 0.31 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 35 H 0.12 1.29 7.16 -52.49 -0.38 0.92 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.06 7.95 -52.48 -0.42 0.65 16 LS Contribution 322.42 15.07 4.86 4.86 Total: -1.00 -31.92 322.42 -8.29 -40.21 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.80 Total: 3.29 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.73 Total: -12.75 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.32 Total: -38.09 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.09 Total: -14.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.92 -8.29 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596659556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.571 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds