Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47301 * 239.99816 * 2 1 3 5 5 H 1.07999 * 119.99800 * 239.99985 * 4 2 1 6 6 C 1.37874 * 119.99937 * 60.00354 * 4 2 1 7 7 N 1.31514 * 120.00072 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00042 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47450 * 89.99430 * 8 6 4 10 10 H 1.48502 * 109.46943 * 209.99804 * 8 6 4 11 11 H 1.48501 * 109.47128 * 329.99328 * 8 6 4 12 12 C 1.50706 * 109.47238 * 119.99481 * 2 1 3 13 13 O 1.21281 * 119.99372 * 119.99921 * 12 2 1 14 14 N 1.34773 * 120.00130 * 300.00815 * 12 2 1 15 15 C 1.46504 * 119.99935 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.46822 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.46929 * 304.98951 * 16 15 14 18 18 C 1.52997 * 109.47317 * 64.99847 * 16 15 14 19 19 C 1.50706 * 109.46573 * 184.99772 * 16 15 14 20 20 C 1.38232 * 120.00143 * 299.72250 * 19 16 15 21 21 C 1.38232 * 120.00231 * 179.79026 * 20 19 16 22 22 C 1.38236 * 119.99863 * 0.44175 * 21 20 19 23 23 C 1.38242 * 120.00159 * 359.81528 * 22 21 20 24 24 C 1.38233 * 120.00058 * 119.99965 * 19 16 15 25 25 H 1.09004 * 109.47485 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47487 * 299.99875 * 1 2 3 27 27 H 1.09000 * 109.47095 * 60.00090 * 1 2 3 28 28 H 0.97003 * 120.00093 * 180.02562 * 7 6 4 29 29 H 0.96995 * 120.00037 * 359.97438 * 14 12 2 30 30 H 1.08994 * 109.47386 * 59.99336 * 15 14 12 31 31 H 1.08998 * 109.46411 * 299.99658 * 15 14 12 32 32 H 1.09002 * 109.47153 * 299.99641 * 18 16 15 33 33 H 1.09001 * 109.46832 * 179.97438 * 18 16 15 34 34 H 1.09004 * 109.47261 * 59.99813 * 18 16 15 35 35 H 1.08002 * 119.99951 * 359.97438 * 20 19 16 36 36 H 1.07993 * 120.00314 * 180.27371 * 21 20 19 37 37 H 1.08003 * 120.00025 * 179.83335 * 22 21 20 38 38 H 1.07990 * 120.00277 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.99547 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 6 2.0323 -0.7103 1.2306 13 8 2.7295 -1.6964 1.1192 14 7 1.7066 -0.2499 2.4546 15 6 2.1945 -0.9408 3.6508 16 6 1.6850 -0.2191 4.9000 17 1 1.9742 0.8309 4.8563 18 6 0.1601 -0.3260 4.9645 19 6 2.2855 -0.8548 6.1274 20 6 2.0509 -2.1896 6.3995 21 6 2.6052 -2.7738 7.5230 22 6 3.3868 -2.0209 8.3792 23 6 3.6172 -0.6847 8.1099 24 6 3.0664 -0.1017 6.9841 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7082 1.1608 -3.4844 29 1 1.1492 0.5389 2.5436 30 1 3.2845 -0.9412 3.6510 31 1 1.8308 -1.9683 3.6506 32 1 -0.2742 0.1338 4.0767 33 1 -0.2027 0.1878 5.8547 34 1 -0.1290 -1.3761 5.0082 35 1 1.4368 -2.7768 5.7328 36 1 2.4255 -3.8177 7.7333 37 1 3.8178 -2.4767 9.2584 38 1 4.2281 -0.0966 8.7786 39 1 3.2464 0.9422 6.7736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596659556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = -52.321492 kcal Electronic energy + Delta-G solvation = -18970.273369 eV Core-core repulsion = 16069.068389 eV Total energy + Delta-G solvation = -2901.204980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85043 -40.10571 -37.05024 -35.75779 -34.12424 -32.36231 -31.77153 -30.17712 -27.57680 -27.13387 -24.70708 -23.80786 -23.18532 -21.30818 -20.83902 -18.35610 -17.94403 -17.62995 -16.85248 -16.52550 -16.13212 -15.92646 -15.75659 -14.93496 -14.74354 -14.61787 -14.23665 -14.15417 -13.91030 -13.55017 -13.33954 -12.98918 -12.91264 -12.68703 -12.58365 -12.34894 -12.18794 -12.14644 -12.01691 -11.73399 -11.60898 -11.03282 -10.60805 -10.31529 -9.96321 -9.78743 -9.59898 -8.14884 -6.25170 0.45616 0.53020 1.40720 1.41222 1.53342 1.94259 2.35735 2.53948 2.91420 3.14569 3.73690 3.79430 4.04412 4.17151 4.19929 4.31731 4.36308 4.43689 4.63175 4.66254 4.74049 4.77061 4.84289 4.94142 4.97662 5.03849 5.11195 5.16256 5.20544 5.32230 5.51032 5.57550 5.63207 5.65532 5.74811 5.76128 5.95435 6.14841 6.22777 6.75187 6.87317 7.40459 7.55850 8.90901 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041973 B = 0.003654 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.935720 B = 7660.771561 C = 7942.947721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.591 6.591 14 N -0.722 5.722 15 C 0.132 3.868 16 C -0.051 4.051 17 H 0.097 0.903 18 C -0.142 4.142 19 C -0.085 4.085 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.021 0.979 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.410 0.590 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 0.186 22.053 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.308 3.692 13 O -0.471 6.471 14 N -0.376 5.376 15 C 0.008 3.992 16 C -0.070 4.070 17 H 0.115 0.885 18 C -0.199 4.199 19 C -0.086 4.086 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.140 -0.397 21.848 21.852 hybrid contribution 0.162 -0.227 -1.051 1.087 sum 0.022 -0.624 20.797 20.806 Atomic orbital electron populations 1.21552 0.94900 0.99404 1.01818 1.18812 0.95452 0.95918 0.89542 0.94004 1.21305 1.31618 1.12727 0.91266 0.93503 1.25586 0.95207 0.95743 1.01377 1.69944 1.37204 1.23540 1.24310 0.85605 0.78620 0.78572 0.79150 1.19941 1.19869 1.20470 1.21587 0.78192 0.83694 0.85710 1.90506 1.40075 1.28860 1.87614 1.45990 1.54355 1.32545 1.04698 1.21304 0.98026 0.96012 0.83819 1.20287 0.96780 1.00088 0.89837 0.88452 1.21856 0.92835 1.02490 1.02753 1.19784 0.98384 0.94378 0.96044 1.21205 1.00563 0.94876 0.98014 1.21416 0.97762 1.00807 0.94698 1.21483 0.98635 0.94541 1.00178 1.21459 0.99794 0.95632 0.97475 1.21337 0.97386 1.00633 0.94944 0.95930 0.92758 0.91073 0.92575 0.75278 0.93665 0.93008 0.91772 0.90910 0.92676 0.86265 0.84631 0.84054 0.83959 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.87 71.98 0.64 -4.76 16 2 C 0.02 1.22 2.64 -12.29 -0.03 1.18 16 3 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 4 C -0.53 -31.26 8.37 25.60 0.21 -31.05 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.91 -51.39 11.32 21.45 0.24 -51.14 16 8 Si 0.95 45.41 29.54 68.60 2.03 47.43 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 C 0.52 24.30 7.15 87.66 0.63 24.93 16 13 O -0.59 -32.53 15.46 -3.03 -0.05 -32.57 16 14 N -0.72 -24.65 5.18 -463.06 -2.40 -27.05 16 15 C 0.13 3.94 4.81 86.38 0.42 4.36 16 16 C -0.05 -1.09 2.60 -11.54 -0.03 -1.12 16 17 H 0.10 1.82 7.88 -2.39 -0.02 1.80 16 18 C -0.14 -2.68 8.88 71.98 0.64 -2.04 16 19 C -0.09 -1.80 4.78 -19.87 -0.09 -1.89 16 20 C -0.13 -2.73 8.76 22.27 0.20 -2.53 16 21 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 22 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 24 C -0.13 -2.32 9.67 22.27 0.22 -2.11 16 25 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 1.95 7.56 -2.39 -0.02 1.93 16 27 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 28 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.41 11.50 7.07 -92.71 -0.66 10.84 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.67 7.59 -2.39 -0.02 1.65 16 32 H 0.06 1.21 7.18 -2.39 -0.02 1.19 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.09 7.37 -2.38 -0.02 1.07 16 35 H 0.12 2.51 7.16 -2.91 -0.02 2.49 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.14 1.62 8.06 -2.92 -0.02 1.60 16 39 H 0.14 2.04 7.95 -2.91 -0.02 2.02 16 Total: -1.00 -69.41 322.42 4.11 -65.30 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.38 Total: 17.37 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.91 Total: -19.33 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -2.15 Total: -78.19 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.41 4.11 -65.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596659556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.982 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds