Wall clock time and date at job start Mon Mar 30 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47394 * 2 1 4 4 C 1.50694 * 109.47315 * 239.99416 * 2 1 3 5 5 C 1.38245 * 120.00337 * 207.90060 * 4 2 1 6 6 C 1.38227 * 119.99992 * 179.78707 * 5 4 2 7 7 C 1.38232 * 120.00212 * 0.44024 * 6 5 4 8 8 C 1.38235 * 120.00211 * 359.81365 * 7 6 5 9 9 C 1.38234 * 119.99929 * 28.17526 * 4 2 1 10 10 N 1.46509 * 109.47051 * 119.99511 * 2 1 3 11 11 C 1.46492 * 119.99830 * 54.27358 * 10 2 1 12 12 C 1.34778 * 119.99792 * 234.27540 * 10 2 1 13 13 O 1.21282 * 119.99440 * 183.52116 * 12 10 2 14 14 C 1.50699 * 120.00260 * 3.52156 * 12 10 2 15 15 H 1.09000 * 109.46747 * 318.29588 * 14 12 10 16 16 C 1.52992 * 109.47067 * 78.29348 * 14 12 10 17 17 C 1.50698 * 109.46594 * 198.29538 * 14 12 10 18 18 H 1.07991 * 120.00704 * 359.97438 * 17 14 12 19 19 C 1.37881 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31515 * 119.99910 * 179.97438 * 19 17 14 21 21 Si 1.86798 * 120.00173 * 359.97438 * 19 17 14 22 22 H 1.48498 * 109.46989 * 89.99958 * 21 19 17 23 23 H 1.48497 * 109.47047 * 210.00049 * 21 19 17 24 24 H 1.48495 * 109.47449 * 329.99868 * 21 19 17 25 25 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46973 * 300.00639 * 1 2 3 27 27 H 1.09004 * 109.46879 * 60.00218 * 1 2 3 28 28 H 1.07996 * 119.99517 * 359.97438 * 5 4 2 29 29 H 1.08001 * 120.00048 * 180.27619 * 6 5 4 30 30 H 1.08001 * 120.00432 * 179.82899 * 7 6 5 31 31 H 1.07999 * 120.00147 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.00167 * 359.97438 * 9 4 2 33 33 H 1.09003 * 109.47316 * 274.12482 * 11 10 2 34 34 H 1.09001 * 109.47497 * 34.12000 * 11 10 2 35 35 H 1.09006 * 109.47227 * 154.12264 * 11 10 2 36 36 H 1.09007 * 109.47171 * 55.47513 * 16 14 12 37 37 H 1.08996 * 109.47759 * 295.47027 * 16 14 12 38 38 H 1.09004 * 109.47266 * 175.47030 * 16 14 12 39 39 H 0.97003 * 120.00168 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 6 3.2603 -1.3452 -1.2091 6 6 3.7191 -2.0006 -2.3363 7 6 2.9541 -2.0138 -3.4876 8 6 1.7286 -1.3747 -3.5106 9 6 1.2678 -0.7228 -2.3819 10 7 2.0183 -0.6905 1.1963 11 6 1.5640 -2.0512 1.4933 12 6 2.8855 -0.0739 2.0235 13 8 3.3391 -0.6679 2.9787 14 6 3.2915 1.3535 1.7616 15 1 3.4604 1.4931 0.6938 16 6 2.1791 2.2941 2.2291 17 6 4.5596 1.6614 2.5154 18 1 5.0247 0.8998 3.1236 19 6 5.1259 2.9155 2.4285 20 7 6.2323 3.1844 3.0867 21 14 4.3217 4.2326 1.3759 22 1 3.3519 4.9996 2.1983 23 1 5.3635 5.1524 0.8526 24 1 3.6106 3.5929 0.2401 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.8597 -1.3314 -0.3109 29 1 4.6764 -2.5002 -2.3184 30 1 3.3138 -2.5235 -4.3692 31 1 1.1311 -1.3846 -4.4102 32 1 0.3103 -0.2236 -2.3998 33 1 0.6251 -2.0084 2.0454 34 1 1.4128 -2.5954 0.5611 35 1 2.3161 -2.5623 2.0945 36 1 1.9546 2.0984 3.2778 37 1 1.2850 2.1263 1.6288 38 1 2.5051 3.3279 2.1142 39 1 6.6306 4.0668 3.0258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596684430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:07 Heat of formation + Delta-G solvation = -1.006637 kcal Electronic energy + Delta-G solvation = -20231.830797 eV Core-core repulsion = 17332.850997 eV Total energy + Delta-G solvation = -2898.979801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07934 -38.60276 -35.73657 -33.90262 -31.94174 -31.28160 -30.76256 -28.97833 -26.96841 -25.15948 -23.96427 -22.34305 -22.17384 -20.72634 -18.39591 -17.13041 -16.87984 -15.97456 -15.62925 -15.08012 -14.80020 -14.45118 -14.30785 -13.75214 -13.50172 -13.25175 -12.94125 -12.80183 -12.43616 -12.31605 -12.24061 -11.96074 -11.66831 -11.55890 -11.41141 -10.97228 -10.87535 -10.82715 -10.57580 -10.29262 -9.63560 -9.11247 -8.85431 -8.71751 -8.64513 -8.56921 -8.23969 -6.05780 -4.05743 1.38114 1.47031 3.22682 3.30138 3.35881 3.48459 3.51793 3.88017 4.37224 4.71741 4.89423 5.02512 5.11393 5.22001 5.24142 5.30097 5.33524 5.49863 5.64085 5.68607 5.77121 5.83577 5.94571 6.01332 6.05978 6.11122 6.12412 6.19312 6.34066 6.44809 6.49500 6.57495 6.64867 6.71177 7.03357 7.06426 7.14178 7.54827 7.97759 8.53085 9.04863 9.11852 9.53094 11.07193 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.006944 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.499477 B = 4031.206307 C = 4346.960925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.169 3.831 3 H 0.113 0.887 4 C -0.094 4.094 5 C -0.097 4.097 6 C -0.119 4.119 7 C -0.125 4.125 8 C -0.125 4.125 9 C -0.116 4.116 10 N -0.623 5.623 11 C 0.087 3.913 12 C 0.530 3.470 13 O -0.528 6.528 14 C -0.005 4.005 15 H 0.047 0.953 16 C -0.145 4.145 17 C -0.504 4.504 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.895 5.895 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.267 1.267 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.615 -7.735 -13.175 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.131 0.869 4 C -0.095 4.095 5 C -0.116 4.116 6 C -0.137 4.137 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.135 4.135 10 N -0.358 5.358 11 C -0.056 4.056 12 C 0.321 3.679 13 O -0.403 6.403 14 C -0.026 4.026 15 H 0.064 0.936 16 C -0.202 4.202 17 C -0.542 4.542 18 H 0.108 0.892 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.712 3.288 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.192 1.192 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.207 -7.929 -12.562 19.227 hybrid contribution -0.356 0.816 -0.647 1.100 sum -12.563 -7.113 -13.209 19.568 Atomic orbital electron populations 1.22193 0.94438 1.02565 1.02527 1.20073 0.94178 0.97189 0.82083 0.86900 1.20308 0.95037 0.98732 0.95409 1.21152 0.95397 0.96335 0.98683 1.21171 0.99798 0.99634 0.93146 1.21121 0.95104 1.00122 0.97998 1.21073 0.96479 0.98669 0.98090 1.21069 0.99794 0.99968 0.92638 1.48095 1.47246 1.15666 1.24820 1.21449 0.99731 0.83899 1.00540 1.21331 0.75912 0.89620 0.81074 1.90580 1.53202 1.66937 1.29536 1.19327 0.96724 0.87772 0.98785 0.93566 1.22127 0.96944 0.99735 1.01426 1.20894 1.05264 0.99237 1.28796 0.89155 1.24971 0.94819 0.98035 0.95233 1.69881 1.19519 1.21948 1.41949 0.86939 0.78465 0.82165 0.81202 1.20440 1.22232 1.19181 0.92039 0.91620 0.91312 0.85651 0.86157 0.86462 0.86357 0.85779 0.93627 0.92301 0.90650 0.92311 0.94688 0.93057 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.35 37.16 0.31 -1.46 16 2 C 0.17 2.45 2.42 -69.08 -0.17 2.29 16 3 H 0.11 1.81 4.68 -51.93 -0.24 1.57 16 4 C -0.09 -1.30 4.86 -104.62 -0.51 -1.80 16 5 C -0.10 -1.46 8.96 -39.58 -0.35 -1.81 16 6 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 7 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 8 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 9 C -0.12 -1.34 9.14 -39.58 -0.36 -1.70 16 10 N -0.62 -10.67 1.82 -175.26 -0.32 -10.99 16 11 C 0.09 1.27 9.14 59.84 0.55 1.82 16 12 C 0.53 11.78 6.66 -10.99 -0.07 11.71 16 13 O -0.53 -13.74 15.15 5.56 0.08 -13.66 16 14 C 0.00 -0.11 1.36 -92.93 -0.13 -0.23 16 15 H 0.05 1.06 5.73 -51.93 -0.30 0.76 16 16 C -0.14 -3.06 8.44 37.15 0.31 -2.74 16 17 C -0.50 -14.62 8.93 -34.44 -0.31 -14.93 16 18 H 0.09 2.99 7.15 -52.49 -0.38 2.61 16 19 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 20 N -0.89 -27.72 13.96 55.43 0.77 -26.94 16 21 Si 0.88 21.39 24.41 -169.99 -4.15 17.24 16 22 H -0.28 -6.51 6.83 56.52 0.39 -6.13 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 25 H 0.06 0.63 7.54 -51.93 -0.39 0.24 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.62 6.52 -51.93 -0.34 0.28 16 28 H 0.13 2.15 7.31 -52.49 -0.38 1.77 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.16 6.12 -52.49 -0.32 0.83 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.75 7.41 -51.93 -0.38 0.36 16 35 H 0.07 1.23 7.26 -51.93 -0.38 0.85 16 36 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 37 H 0.03 0.60 6.93 -51.93 -0.36 0.24 16 38 H 0.05 1.13 3.22 -51.93 -0.17 0.96 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -33.06 306.42 -6.37 -39.43 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.36 Total: 2.66 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.02 Total: -12.36 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.45 Total: -37.93 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.15 Total: 17.24 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.06 -6.37 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.425 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds