Wall clock time and date at job start Mon Mar 30 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47394 * 2 1 4 4 C 1.50694 * 109.47315 * 239.99416 * 2 1 3 5 5 C 1.38245 * 120.00337 * 207.90060 * 4 2 1 6 6 C 1.38227 * 119.99992 * 179.78707 * 5 4 2 7 7 C 1.38232 * 120.00212 * 0.44024 * 6 5 4 8 8 C 1.38235 * 120.00211 * 359.81365 * 7 6 5 9 9 C 1.38234 * 119.99929 * 28.17526 * 4 2 1 10 10 N 1.46509 * 109.47051 * 119.99511 * 2 1 3 11 11 C 1.46492 * 119.99830 * 54.27358 * 10 2 1 12 12 C 1.34778 * 119.99792 * 234.27540 * 10 2 1 13 13 O 1.21282 * 119.99440 * 183.52116 * 12 10 2 14 14 C 1.50699 * 120.00260 * 3.52156 * 12 10 2 15 15 H 1.09000 * 109.46747 * 318.29588 * 14 12 10 16 16 C 1.52992 * 109.47067 * 78.29348 * 14 12 10 17 17 C 1.50698 * 109.46594 * 198.29538 * 14 12 10 18 18 H 1.07991 * 120.00704 * 359.97438 * 17 14 12 19 19 C 1.37881 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31515 * 119.99910 * 179.97438 * 19 17 14 21 21 Si 1.86798 * 120.00173 * 359.97438 * 19 17 14 22 22 H 1.48498 * 109.46989 * 89.99958 * 21 19 17 23 23 H 1.48497 * 109.47047 * 210.00049 * 21 19 17 24 24 H 1.48495 * 109.47449 * 329.99868 * 21 19 17 25 25 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46973 * 300.00639 * 1 2 3 27 27 H 1.09004 * 109.46879 * 60.00218 * 1 2 3 28 28 H 1.07996 * 119.99517 * 359.97438 * 5 4 2 29 29 H 1.08001 * 120.00048 * 180.27619 * 6 5 4 30 30 H 1.08001 * 120.00432 * 179.82899 * 7 6 5 31 31 H 1.07999 * 120.00147 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.00167 * 359.97438 * 9 4 2 33 33 H 1.09003 * 109.47316 * 274.12482 * 11 10 2 34 34 H 1.09001 * 109.47497 * 34.12000 * 11 10 2 35 35 H 1.09006 * 109.47227 * 154.12264 * 11 10 2 36 36 H 1.09007 * 109.47171 * 55.47513 * 16 14 12 37 37 H 1.08996 * 109.47759 * 295.47027 * 16 14 12 38 38 H 1.09004 * 109.47266 * 175.47030 * 16 14 12 39 39 H 0.97003 * 120.00168 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 6 3.2603 -1.3452 -1.2091 6 6 3.7191 -2.0006 -2.3363 7 6 2.9541 -2.0138 -3.4876 8 6 1.7286 -1.3747 -3.5106 9 6 1.2678 -0.7228 -2.3819 10 7 2.0183 -0.6905 1.1963 11 6 1.5640 -2.0512 1.4933 12 6 2.8855 -0.0739 2.0235 13 8 3.3391 -0.6679 2.9787 14 6 3.2915 1.3535 1.7616 15 1 3.4604 1.4931 0.6938 16 6 2.1791 2.2941 2.2291 17 6 4.5596 1.6614 2.5154 18 1 5.0247 0.8998 3.1236 19 6 5.1259 2.9155 2.4285 20 7 6.2323 3.1844 3.0867 21 14 4.3217 4.2326 1.3759 22 1 3.3519 4.9996 2.1983 23 1 5.3635 5.1524 0.8526 24 1 3.6106 3.5929 0.2401 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.8597 -1.3314 -0.3109 29 1 4.6764 -2.5002 -2.3184 30 1 3.3138 -2.5235 -4.3692 31 1 1.1311 -1.3846 -4.4102 32 1 0.3103 -0.2236 -2.3998 33 1 0.6251 -2.0084 2.0454 34 1 1.4128 -2.5954 0.5611 35 1 2.3161 -2.5623 2.0945 36 1 1.9546 2.0984 3.2778 37 1 1.2850 2.1263 1.6288 38 1 2.5051 3.3279 2.1142 39 1 6.6306 4.0668 3.0258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596684430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:06 Heat of formation + Delta-G solvation = -22.205682 kcal Electronic energy + Delta-G solvation = -20232.750057 eV Core-core repulsion = 17332.850997 eV Total energy + Delta-G solvation = -2899.899060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41897 -39.88601 -37.10565 -35.89584 -33.37451 -33.09589 -31.70695 -29.91441 -28.36168 -27.19557 -25.09924 -23.92159 -23.23346 -21.88429 -19.89907 -18.89483 -18.17372 -17.71805 -17.12605 -16.43694 -16.13333 -15.78747 -15.59084 -15.09011 -14.94117 -14.56462 -14.28649 -14.06431 -13.93080 -13.88644 -13.49657 -13.13430 -13.03579 -12.83021 -12.64755 -12.56294 -12.45564 -12.15496 -11.83183 -11.77934 -11.50503 -11.24612 -10.79928 -10.46622 -9.78417 -9.73010 -9.54797 -8.30354 -6.38143 0.44246 0.53488 1.29775 1.36581 1.47782 1.78186 2.12180 2.31363 2.92303 3.02876 3.67095 3.78791 4.02911 4.16130 4.20017 4.27719 4.33488 4.38906 4.41408 4.55539 4.62120 4.64568 4.71349 4.72877 4.82089 4.86068 4.97275 4.99782 5.12452 5.20283 5.29731 5.39296 5.46188 5.56525 5.64835 5.67174 5.80945 6.14965 6.20450 6.47828 6.75197 7.22234 7.39971 8.87479 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.006944 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.499477 B = 4031.206307 C = 4346.960925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.100 0.900 4 C -0.106 4.106 5 C -0.128 4.128 6 C -0.133 4.133 7 C -0.123 4.123 8 C -0.119 4.119 9 C -0.110 4.110 10 N -0.608 5.608 11 C 0.088 3.912 12 C 0.526 3.474 13 O -0.585 6.585 14 C -0.003 4.003 15 H 0.059 0.941 16 C -0.139 4.139 17 C -0.521 4.521 18 H 0.025 0.975 19 C 0.008 3.992 20 N -0.951 5.951 21 Si 0.956 3.044 22 H -0.258 1.258 23 H -0.296 1.296 24 H -0.231 1.231 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.675 -6.987 -17.171 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.117 0.883 4 C -0.107 4.107 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.128 4.128 10 N -0.341 5.341 11 C -0.054 4.054 12 C 0.317 3.683 13 O -0.464 6.464 14 C -0.025 4.025 15 H 0.077 0.923 16 C -0.196 4.196 17 C -0.559 4.559 18 H 0.043 0.957 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.780 3.220 22 H -0.183 1.183 23 H -0.224 1.224 24 H -0.154 1.154 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.141 0.859 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.324 -7.213 -16.606 24.377 hybrid contribution 0.972 0.426 0.553 1.197 sum -15.352 -6.787 -16.053 23.226 Atomic orbital electron populations 1.22197 0.90951 1.03884 1.04060 1.20368 0.96767 0.96142 0.80948 0.88282 1.20262 0.94926 0.99361 0.96151 1.21003 0.96347 0.99040 0.98234 1.21303 1.00521 0.99813 0.93458 1.21463 0.95127 0.99652 0.97868 1.21526 0.96184 0.96969 0.99003 1.21380 1.00408 0.99411 0.91566 1.48001 1.45301 1.16307 1.24524 1.21568 0.99644 0.82491 1.01701 1.21129 0.76586 0.89400 0.81210 1.90554 1.55646 1.67919 1.32320 1.19216 0.95245 0.89668 0.98346 0.92292 1.22027 0.97628 0.98430 1.01542 1.21038 1.07813 0.98207 1.28828 0.95677 1.26024 0.95235 1.00864 0.96729 1.70074 1.21747 1.22955 1.44270 0.85758 0.77843 0.78268 0.80154 1.18317 1.22361 1.15415 0.90879 0.91675 0.88188 0.89619 0.85932 0.83849 0.82873 0.82699 0.91366 0.89796 0.93232 0.93569 0.89855 0.93318 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.35 71.98 0.60 -2.05 16 2 C 0.16 4.22 2.42 44.24 0.11 4.33 16 3 H 0.10 2.87 4.68 -2.39 -0.01 2.86 16 4 C -0.11 -2.66 4.86 -19.87 -0.10 -2.76 16 5 C -0.13 -3.81 8.96 22.27 0.20 -3.61 16 6 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 7 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 8 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 9 C -0.11 -1.99 9.14 22.27 0.20 -1.78 16 10 N -0.61 -20.62 1.82 -826.79 -1.51 -22.13 16 11 C 0.09 2.54 9.14 127.77 1.17 3.71 16 12 C 0.53 24.34 6.66 87.66 0.58 24.92 16 13 O -0.59 -32.83 15.15 -3.04 -0.05 -32.88 16 14 C 0.00 -0.15 1.36 -12.29 -0.02 -0.17 16 15 H 0.06 2.67 5.73 -2.39 -0.01 2.66 16 16 C -0.14 -5.61 8.44 71.98 0.61 -5.01 16 17 C -0.52 -32.07 8.93 25.60 0.23 -31.84 16 18 H 0.02 1.82 7.15 -2.92 -0.02 1.80 16 19 C 0.01 0.49 5.45 84.66 0.46 0.95 16 20 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 21 Si 0.96 43.75 24.41 68.60 1.67 45.42 16 22 H -0.26 -10.97 6.83 99.48 0.68 -10.29 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.23 -9.19 6.53 99.48 0.65 -8.54 16 25 H 0.07 1.13 7.54 -2.39 -0.02 1.11 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.15 6.52 -2.38 -0.02 1.13 16 28 H 0.09 3.17 7.31 -2.91 -0.02 3.15 16 29 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 30 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.16 1.82 6.12 -2.91 -0.02 1.81 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.99 7.41 -2.39 -0.02 1.98 16 35 H 0.05 1.69 7.26 -2.38 -0.02 1.67 16 36 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.08 2.54 6.93 -2.39 -0.02 2.52 16 38 H 0.05 1.99 3.22 -2.38 -0.01 1.98 16 39 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -80.30 306.42 6.10 -74.20 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.96 Total: 17.22 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 4.72 Total: -20.18 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.21 Total: -83.78 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.05 Total: -32.88 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.42 kcal Total: -80.30 6.10 -74.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.995 kcal (2) G-P(sol) polarization free energy of solvation -80.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds