Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47095 * 2 1 4 4 C 1.50698 * 109.47380 * 120.00253 * 2 1 3 5 5 H 1.07998 * 119.99606 * 120.00267 * 4 2 1 6 6 C 1.37876 * 120.00027 * 300.00218 * 4 2 1 7 7 N 1.31516 * 119.99714 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99955 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47421 * 90.00229 * 8 6 4 10 10 H 1.48506 * 109.47007 * 210.00156 * 8 6 4 11 11 H 1.48502 * 109.47079 * 329.99757 * 8 6 4 12 12 C 1.50697 * 109.47058 * 240.00721 * 2 1 3 13 13 O 1.21281 * 119.99826 * 239.99753 * 12 2 1 14 14 N 1.34777 * 120.00440 * 59.99645 * 12 2 1 15 15 C 1.46501 * 119.99584 * 359.97438 * 14 12 2 16 16 C 1.46500 * 120.00373 * 179.97438 * 14 12 2 17 17 H 1.09003 * 109.46790 * 53.76279 * 16 14 12 18 18 C 1.52999 * 109.47392 * 173.75910 * 16 14 12 19 19 C 1.50699 * 109.47056 * 293.76678 * 16 14 12 20 20 C 1.38232 * 119.99843 * 314.66945 * 19 16 14 21 21 C 1.38236 * 120.00094 * 179.81613 * 20 19 16 22 22 C 1.38234 * 119.99849 * 0.39772 * 21 20 19 23 23 C 1.38237 * 120.00093 * 359.85579 * 22 21 20 24 24 C 1.38233 * 120.00162 * 134.95542 * 19 16 14 25 25 H 1.08998 * 109.47158 * 299.99624 * 1 2 3 26 26 H 1.09003 * 109.47300 * 59.99692 * 1 2 3 27 27 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99325 * 179.97438 * 7 6 4 29 29 H 1.08991 * 109.47137 * 266.25780 * 15 14 12 30 30 H 1.08999 * 109.47300 * 26.26242 * 15 14 12 31 31 H 1.09005 * 109.46790 * 146.26146 * 15 14 12 32 32 H 1.09002 * 109.47082 * 300.00452 * 18 16 14 33 33 H 1.09001 * 109.46668 * 59.99899 * 18 16 14 34 34 H 1.08998 * 109.47152 * 180.02562 * 18 16 14 35 35 H 1.08004 * 119.99996 * 0.02562 * 20 19 16 36 36 H 1.08001 * 119.99954 * 180.23766 * 21 20 19 37 37 H 1.07996 * 120.00404 * 179.83889 * 22 21 20 38 38 H 1.08002 * 120.00304 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00044 * 359.96996 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8492 2.1772 1.4924 12 6 2.0323 -0.7102 -1.2305 13 8 2.7296 -1.6963 -1.1193 14 7 1.7067 -0.2497 -2.4546 15 6 0.8639 0.9410 -2.5889 16 6 2.1955 -0.9399 -3.6509 17 1 1.9266 -1.9949 -3.5970 18 6 1.5614 -0.3150 -4.8952 19 6 3.6945 -0.8070 -3.7302 20 6 4.2927 0.4183 -3.5031 21 6 5.6680 0.5395 -3.5721 22 6 6.4445 -0.5629 -3.8763 23 6 5.8459 -1.7872 -4.1086 24 6 4.4709 -1.9091 -4.0359 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9041 -0.5276 4.4374 29 1 -0.1785 0.6389 -2.6892 30 1 0.9771 1.5679 -1.7044 31 1 1.1662 1.5023 -3.4731 32 1 0.4771 -0.4111 -4.8377 33 1 1.8302 0.7400 -4.9490 34 1 1.9247 -0.8288 -5.7851 35 1 3.6857 1.2803 -3.2684 36 1 6.1356 1.4960 -3.3909 37 1 7.5188 -0.4678 -3.9328 38 1 6.4526 -2.6484 -4.3468 39 1 4.0032 -2.8655 -4.2175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596684431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = 4.088451 kcal Electronic energy + Delta-G solvation = -20165.358847 eV Core-core repulsion = 17266.599986 eV Total energy + Delta-G solvation = -2898.758861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96909 -38.42012 -35.65465 -34.03632 -32.22618 -30.80693 -30.58932 -29.07638 -26.87268 -25.04835 -23.81152 -22.51485 -22.22361 -20.35879 -18.43023 -16.97532 -16.64241 -16.05689 -15.54866 -15.42668 -14.66449 -14.38138 -14.22226 -13.66034 -13.17240 -13.16711 -13.05014 -12.73034 -12.48298 -12.35483 -12.18311 -11.99342 -11.59719 -11.55804 -11.16391 -10.94015 -10.79900 -10.76089 -10.51391 -10.25344 -9.58164 -9.05295 -8.77481 -8.68063 -8.55496 -8.36380 -8.12518 -6.01864 -4.01424 1.56441 1.64226 3.24585 3.31089 3.37476 3.51507 3.62589 4.05608 4.40173 4.85715 4.99759 5.11191 5.19395 5.24713 5.27516 5.30269 5.36918 5.56187 5.63700 5.66763 5.74182 5.80828 5.89956 5.96761 6.07067 6.19003 6.19654 6.26511 6.37092 6.47451 6.66789 6.70332 6.71893 6.79861 7.09075 7.21035 7.22544 7.58147 8.04557 8.58394 9.13687 9.19616 9.57461 11.11323 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.006441 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.510481 B = 4345.818464 C = 4880.905201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.001 4.001 3 H 0.049 0.951 4 C -0.503 4.503 5 H 0.092 0.908 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.529 3.471 13 O -0.520 6.520 14 N -0.628 5.628 15 C 0.076 3.924 16 C 0.184 3.816 17 H 0.080 0.920 18 C -0.152 4.152 19 C -0.079 4.079 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.101 4.101 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.264 0.736 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 4.806 -18.428 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 H 0.067 0.933 4 C -0.541 4.541 5 H 0.110 0.890 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.319 3.681 13 O -0.393 6.393 14 N -0.365 5.365 15 C -0.067 4.067 16 C 0.081 3.919 17 H 0.098 0.902 18 C -0.209 4.209 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.120 4.120 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.486 4.249 -18.139 18.636 hybrid contribution -0.623 0.870 0.396 1.140 sum -0.137 5.118 -17.743 18.467 Atomic orbital electron populations 1.22356 0.97475 1.01669 0.99760 1.19264 0.93184 0.97272 0.92570 0.93323 1.20960 1.31847 1.14053 0.87268 0.88959 1.24982 0.95873 0.96560 0.95767 1.69891 1.45590 1.40224 0.97827 0.86912 0.80727 0.83880 0.76987 1.20542 1.22361 1.19331 1.21278 0.78883 0.84372 0.83569 1.90586 1.36613 1.26166 1.85910 1.48237 1.52947 1.29848 1.05452 1.21948 0.94235 0.87922 1.02618 1.19748 0.89274 0.97494 0.85432 0.90185 1.22082 1.00903 1.01415 0.96490 1.20136 0.95692 0.93608 0.98566 1.20884 0.94656 0.97212 0.99309 1.21070 0.93899 0.98654 1.00411 1.21064 0.99440 0.93204 1.00665 1.21053 0.94732 0.97379 1.00822 1.20932 0.93723 0.97832 0.99483 0.93487 0.93704 0.92569 0.92636 0.92825 0.90388 0.91866 0.91619 0.91702 0.91376 0.86600 0.86457 0.86545 0.86403 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.28 37.16 0.31 -2.93 16 2 C 0.00 -0.03 1.42 -92.93 -0.13 -0.17 16 3 H 0.05 1.14 6.47 -51.93 -0.34 0.80 16 4 C -0.50 -14.87 8.96 -34.44 -0.31 -15.18 16 5 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 8 Si 0.88 21.60 24.37 -169.99 -4.14 17.46 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 12 C 0.53 11.89 6.81 -10.99 -0.07 11.82 16 13 O -0.52 -13.73 14.85 5.56 0.08 -13.64 16 14 N -0.63 -10.61 2.45 -175.26 -0.43 -11.04 16 15 C 0.08 0.99 7.85 59.85 0.47 1.46 16 16 C 0.18 2.71 2.78 -69.08 -0.19 2.52 16 17 H 0.08 1.27 7.93 -51.93 -0.41 0.85 16 18 C -0.15 -1.57 8.05 37.16 0.30 -1.27 16 19 C -0.08 -1.23 3.96 -104.63 -0.41 -1.65 16 20 C -0.10 -1.56 9.24 -39.58 -0.37 -1.93 16 21 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 22 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 23 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 24 C -0.10 -1.52 9.67 -39.58 -0.38 -1.90 16 25 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 26 H 0.04 0.74 4.59 -51.93 -0.24 0.50 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.05 0.62 7.19 -51.93 -0.37 0.25 16 30 H 0.08 1.09 5.72 -51.93 -0.30 0.79 16 31 H 0.06 0.64 6.03 -51.93 -0.31 0.33 16 32 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 33 H 0.06 0.62 6.61 -51.93 -0.34 0.28 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.12 1.66 7.88 -52.48 -0.41 1.25 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.61 8.00 -52.49 -0.42 1.19 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -34.64 306.13 -6.58 -41.22 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.39 Total: 2.37 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.08 Total: -13.57 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.34 Total: -38.45 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.64 -6.58 -41.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.304 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds