Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47095 * 2 1 4 4 C 1.50698 * 109.47380 * 120.00253 * 2 1 3 5 5 H 1.07998 * 119.99606 * 120.00267 * 4 2 1 6 6 C 1.37876 * 120.00027 * 300.00218 * 4 2 1 7 7 N 1.31516 * 119.99714 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99955 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47421 * 90.00229 * 8 6 4 10 10 H 1.48506 * 109.47007 * 210.00156 * 8 6 4 11 11 H 1.48502 * 109.47079 * 329.99757 * 8 6 4 12 12 C 1.50697 * 109.47058 * 240.00721 * 2 1 3 13 13 O 1.21281 * 119.99826 * 239.99753 * 12 2 1 14 14 N 1.34777 * 120.00440 * 59.99645 * 12 2 1 15 15 C 1.46501 * 119.99584 * 359.97438 * 14 12 2 16 16 C 1.46500 * 120.00373 * 179.97438 * 14 12 2 17 17 H 1.09003 * 109.46790 * 53.76279 * 16 14 12 18 18 C 1.52999 * 109.47392 * 173.75910 * 16 14 12 19 19 C 1.50699 * 109.47056 * 293.76678 * 16 14 12 20 20 C 1.38232 * 119.99843 * 314.66945 * 19 16 14 21 21 C 1.38236 * 120.00094 * 179.81613 * 20 19 16 22 22 C 1.38234 * 119.99849 * 0.39772 * 21 20 19 23 23 C 1.38237 * 120.00093 * 359.85579 * 22 21 20 24 24 C 1.38233 * 120.00162 * 134.95542 * 19 16 14 25 25 H 1.08998 * 109.47158 * 299.99624 * 1 2 3 26 26 H 1.09003 * 109.47300 * 59.99692 * 1 2 3 27 27 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99325 * 179.97438 * 7 6 4 29 29 H 1.08991 * 109.47137 * 266.25780 * 15 14 12 30 30 H 1.08999 * 109.47300 * 26.26242 * 15 14 12 31 31 H 1.09005 * 109.46790 * 146.26146 * 15 14 12 32 32 H 1.09002 * 109.47082 * 300.00452 * 18 16 14 33 33 H 1.09001 * 109.46668 * 59.99899 * 18 16 14 34 34 H 1.08998 * 109.47152 * 180.02562 * 18 16 14 35 35 H 1.08004 * 119.99996 * 0.02562 * 20 19 16 36 36 H 1.08001 * 119.99954 * 180.23766 * 21 20 19 37 37 H 1.07996 * 120.00404 * 179.83889 * 22 21 20 38 38 H 1.08002 * 120.00304 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00044 * 359.96996 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8492 2.1772 1.4924 12 6 2.0323 -0.7102 -1.2305 13 8 2.7296 -1.6963 -1.1193 14 7 1.7067 -0.2497 -2.4546 15 6 0.8639 0.9410 -2.5889 16 6 2.1955 -0.9399 -3.6509 17 1 1.9266 -1.9949 -3.5970 18 6 1.5614 -0.3150 -4.8952 19 6 3.6945 -0.8070 -3.7302 20 6 4.2927 0.4183 -3.5031 21 6 5.6680 0.5395 -3.5721 22 6 6.4445 -0.5629 -3.8763 23 6 5.8459 -1.7872 -4.1086 24 6 4.4709 -1.9091 -4.0359 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9041 -0.5276 4.4374 29 1 -0.1785 0.6389 -2.6892 30 1 0.9771 1.5679 -1.7044 31 1 1.1662 1.5023 -3.4731 32 1 0.4771 -0.4111 -4.8377 33 1 1.8302 0.7400 -4.9490 34 1 1.9247 -0.8288 -5.7851 35 1 3.6857 1.2803 -3.2684 36 1 6.1356 1.4960 -3.3909 37 1 7.5188 -0.4678 -3.9328 38 1 6.4526 -2.6484 -4.3468 39 1 4.0032 -2.8655 -4.2175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596684431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = -18.994576 kcal Electronic energy + Delta-G solvation = -20166.359802 eV Core-core repulsion = 17266.599986 eV Total energy + Delta-G solvation = -2899.759816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34792 -39.74027 -37.06201 -35.94097 -33.92826 -32.41474 -31.73169 -30.11679 -28.09684 -26.99388 -25.32231 -23.75431 -23.41475 -21.73983 -19.88990 -18.87933 -17.89854 -17.52051 -17.32551 -16.62234 -16.34181 -15.73108 -15.45960 -15.05627 -14.86493 -14.46573 -14.27817 -14.20012 -13.77143 -13.60986 -13.45319 -13.27244 -12.99993 -12.91262 -12.59322 -12.45903 -12.23543 -12.08460 -11.87944 -11.83763 -11.43003 -11.19176 -10.77323 -10.39410 -9.79236 -9.65892 -9.43311 -8.27515 -6.35115 0.46047 0.53068 1.31572 1.38646 1.50069 1.91287 2.19294 2.34075 2.93464 3.06053 3.79032 3.89199 4.00961 4.13271 4.24492 4.27053 4.30315 4.36350 4.41636 4.62561 4.62863 4.66539 4.69291 4.79073 4.84691 4.91830 4.99992 5.02916 5.14968 5.16403 5.27242 5.47034 5.52688 5.58244 5.61496 5.63673 5.84771 6.15085 6.25384 6.57042 6.82024 7.26393 7.51952 8.90617 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.006441 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.510481 B = 4345.818464 C = 4880.905201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.003 4.003 3 H 0.063 0.937 4 C -0.521 4.521 5 H 0.025 0.975 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.961 3.039 9 H -0.259 1.259 10 H -0.299 1.299 11 H -0.228 1.228 12 C 0.524 3.476 13 O -0.578 6.578 14 N -0.613 5.613 15 C 0.060 3.940 16 C 0.179 3.821 17 H 0.060 0.940 18 C -0.140 4.140 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.125 4.125 25 H 0.044 0.956 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 7.958 -20.772 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 H 0.081 0.919 4 C -0.559 4.559 5 H 0.043 0.957 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.785 3.215 9 H -0.185 1.185 10 H -0.227 1.227 11 H -0.151 1.151 12 C 0.314 3.686 13 O -0.456 6.456 14 N -0.348 5.348 15 C -0.081 4.081 16 C 0.076 3.924 17 H 0.078 0.922 18 C -0.197 4.197 19 C -0.097 4.097 20 C -0.138 4.138 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.144 4.144 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.295 7.432 -20.562 21.902 hybrid contribution 0.042 -0.223 1.081 1.104 sum -1.253 7.210 -19.481 20.810 Atomic orbital electron populations 1.22268 0.94543 1.01609 1.02126 1.19178 0.95409 0.96995 0.90866 0.91893 1.21124 1.31467 1.12750 0.90581 0.95708 1.26076 0.97520 1.00863 0.94725 1.70094 1.47774 1.42919 0.98717 0.85692 0.78773 0.78932 0.78100 1.18487 1.22709 1.15146 1.21089 0.78599 0.83759 0.85176 1.90565 1.39348 1.28683 1.86999 1.48122 1.52026 1.30402 1.04212 1.22341 0.94945 0.86519 1.04334 1.19950 0.89410 0.96817 0.86201 0.92217 1.22048 1.01519 1.01922 0.94247 1.20325 0.96280 0.94047 0.99054 1.21090 0.95468 0.97321 0.99940 1.21434 0.93808 0.99900 0.99869 1.21443 1.00906 0.92848 0.99891 1.21397 0.94581 0.98546 1.00294 1.21184 0.94667 0.98105 1.00428 0.93715 0.88509 0.94030 0.92447 0.90284 0.90718 0.88104 0.89935 0.90236 0.90142 0.85780 0.84327 0.83950 0.84336 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 8.28 71.98 0.60 -5.16 16 2 C 0.00 -0.14 1.42 -12.29 -0.02 -0.16 16 3 H 0.06 2.79 6.47 -2.39 -0.02 2.77 16 4 C -0.52 -32.16 8.96 25.60 0.23 -31.93 16 5 H 0.02 1.81 7.00 -2.91 -0.02 1.79 16 6 C 0.00 0.25 5.45 84.65 0.46 0.71 16 7 N -0.95 -62.69 13.96 21.45 0.30 -62.39 16 8 Si 0.96 43.68 24.37 68.60 1.67 45.35 16 9 H -0.26 -10.97 6.87 99.48 0.68 -10.29 16 10 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.23 -8.89 6.53 99.48 0.65 -8.24 16 12 C 0.52 23.75 6.81 87.66 0.60 24.35 16 13 O -0.58 -32.28 14.85 -3.03 -0.05 -32.32 16 14 N -0.61 -19.58 2.45 -826.80 -2.03 -21.61 16 15 C 0.06 1.27 7.85 127.77 1.00 2.27 16 16 C 0.18 5.07 2.78 44.24 0.12 5.20 16 17 H 0.06 1.92 7.93 -2.39 -0.02 1.90 16 18 C -0.14 -2.42 8.05 71.98 0.58 -1.84 16 19 C -0.10 -2.97 3.96 -19.87 -0.08 -3.04 16 20 C -0.12 -3.52 9.24 22.27 0.21 -3.31 16 21 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 22 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 23 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 24 C -0.13 -3.83 9.67 22.27 0.22 -3.62 16 25 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 26 H 0.10 2.71 4.59 -2.39 -0.01 2.70 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 29 H 0.08 1.36 7.19 -2.39 -0.02 1.34 16 30 H 0.07 1.70 5.72 -2.39 -0.01 1.68 16 31 H 0.10 1.46 6.03 -2.38 -0.01 1.45 16 32 H 0.08 1.17 7.92 -2.39 -0.02 1.15 16 33 H 0.08 1.16 6.61 -2.39 -0.02 1.14 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.12 3.29 7.88 -2.91 -0.02 3.26 16 36 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.12 3.43 8.00 -2.91 -0.02 3.41 16 Total: -1.00 -82.88 306.13 5.44 -77.44 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.96 Total: 19.94 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.59 Total: -26.40 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.73 Total: -84.00 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.32 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.67 Total: 45.35 kcal Total: -82.88 5.44 -77.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.442 kcal (2) G-P(sol) polarization free energy of solvation -82.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds