Wall clock time and date at job start Mon Mar 30 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47121 * 2 1 4 4 C 1.50696 * 109.47375 * 240.00434 * 2 1 3 5 5 H 1.08010 * 120.00010 * 242.11553 * 4 2 1 6 6 C 1.37876 * 120.00247 * 62.11092 * 4 2 1 7 7 N 1.31516 * 119.99953 * 195.06696 * 6 4 2 8 8 Si 1.86794 * 119.99990 * 15.06193 * 6 4 2 9 9 H 1.48506 * 109.47138 * 94.96558 * 8 6 4 10 10 H 1.48501 * 109.47236 * 214.96785 * 8 6 4 11 11 H 1.48498 * 109.47072 * 334.96916 * 8 6 4 12 12 C 1.50700 * 109.47357 * 119.99935 * 2 1 3 13 13 O 1.21278 * 119.99840 * 95.98758 * 12 2 1 14 14 N 1.34777 * 120.00342 * 275.98882 * 12 2 1 15 15 C 1.46489 * 120.00282 * 185.36699 * 14 12 2 16 16 C 1.46503 * 119.99664 * 5.36753 * 14 12 2 17 17 H 1.08999 * 109.47281 * 1.52511 * 16 14 12 18 18 C 1.53001 * 109.46915 * 241.52384 * 16 14 12 19 19 C 1.50700 * 109.47261 * 121.52471 * 16 14 12 20 20 C 1.38233 * 120.00361 * 234.14206 * 19 16 14 21 21 C 1.38231 * 120.00245 * 179.78675 * 20 19 16 22 22 C 1.38232 * 120.00012 * 0.43894 * 21 20 19 23 23 C 1.38235 * 119.99843 * 359.81840 * 22 21 20 24 24 C 1.38231 * 120.00226 * 359.97221 * 23 22 21 25 25 H 1.09005 * 109.47382 * 305.51838 * 1 2 3 26 26 H 1.09005 * 109.47501 * 65.51282 * 1 2 3 27 27 H 1.09002 * 109.47388 * 185.51402 * 1 2 3 28 28 H 0.96996 * 119.99774 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47050 * 263.74635 * 15 14 12 30 30 H 1.09005 * 109.47596 * 23.74497 * 15 14 12 31 31 H 1.09004 * 109.47438 * 143.74939 * 15 14 12 32 32 H 1.08999 * 109.47250 * 300.00146 * 18 16 14 33 33 H 1.08996 * 109.46788 * 60.00375 * 18 16 14 34 34 H 1.09003 * 109.46615 * 179.97438 * 18 16 14 35 35 H 1.08005 * 119.99943 * 0.02562 * 20 19 16 36 36 H 1.08008 * 120.00134 * 180.27675 * 21 20 19 37 37 H 1.08000 * 120.00061 * 179.83029 * 22 21 20 38 38 H 1.08000 * 120.00158 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.00379 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6248 -1.6080 -1.1318 6 6 1.7356 -0.2143 -2.4823 7 7 1.9074 -0.9684 -3.5460 8 14 1.0894 1.5285 -2.6673 9 1 2.2192 2.4469 -2.9595 10 1 0.1103 1.5776 -3.7828 11 1 0.4250 1.9465 -1.4067 12 6 2.0323 -0.7104 1.2305 13 8 2.3377 -1.8826 1.1716 14 7 2.1422 -0.0431 2.3963 15 6 2.7399 -0.6986 3.5620 16 6 1.6638 1.3379 2.4977 17 1 1.2301 1.6431 1.5453 18 6 2.8353 2.2594 2.8432 19 6 0.6173 1.4290 3.5783 20 6 -0.6246 1.9654 3.2944 21 6 -1.5860 2.0449 4.2845 22 6 -1.3023 1.5963 5.5609 23 6 -0.0585 1.0648 5.8462 24 6 0.9014 0.9813 4.8550 25 1 -0.3634 0.5971 0.8365 26 1 -0.3634 0.4260 -0.9353 27 1 -0.3634 -1.0229 0.0987 28 1 1.6990 -0.6193 -4.4266 29 1 1.9509 -1.1081 4.1928 30 1 3.3945 -1.5045 3.2299 31 1 3.3190 0.0289 4.1308 32 1 3.2689 1.9542 3.7955 33 1 3.5920 2.1935 2.0616 34 1 2.4793 3.2869 2.9182 35 1 -0.8453 2.3188 2.2979 36 1 -2.5579 2.4599 4.0615 37 1 -2.0524 1.6610 6.3351 38 1 0.1631 0.7140 6.8433 39 1 1.8730 0.5657 5.0777 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596684432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:10 Heat of formation + Delta-G solvation = -0.636605 kcal Electronic energy + Delta-G solvation = -20207.529663 eV Core-core repulsion = 17308.565908 eV Total energy + Delta-G solvation = -2898.963755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11412 -38.60676 -35.75273 -33.85728 -31.74370 -31.34833 -30.81113 -29.22480 -27.00898 -25.17107 -23.80653 -22.52309 -22.08362 -20.92392 -18.40256 -17.14856 -16.57628 -16.14626 -15.74182 -15.03945 -14.75887 -14.52817 -14.24888 -13.69928 -13.45680 -13.29519 -13.18491 -12.58040 -12.40805 -12.31764 -12.17472 -12.05361 -11.83240 -11.50877 -11.34188 -10.96648 -10.80839 -10.75184 -10.55592 -10.27749 -9.60932 -9.21690 -8.92312 -8.85537 -8.59799 -8.42780 -8.20755 -6.08154 -4.03324 1.30843 1.38690 3.23549 3.31231 3.35093 3.47727 3.56952 3.87882 4.39242 4.66133 4.83752 4.95291 5.06957 5.19118 5.21439 5.24640 5.33392 5.46127 5.54454 5.70325 5.76759 5.81298 5.90565 5.95943 6.04433 6.11669 6.19561 6.23313 6.41106 6.46429 6.47871 6.55349 6.61737 6.79823 6.97573 7.03292 7.23352 7.58941 8.00227 8.52797 9.07991 9.12429 9.53932 11.04887 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.006611 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.261124 B = 4234.067013 C = 4750.423442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 H 0.041 0.959 4 C -0.509 4.509 5 H 0.087 0.913 6 C 0.075 3.925 7 N -0.888 5.888 8 Si 0.860 3.140 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.253 1.253 12 C 0.532 3.468 13 O -0.530 6.530 14 N -0.622 5.622 15 C 0.080 3.920 16 C 0.169 3.831 17 H 0.109 0.891 18 C -0.160 4.160 19 C -0.087 4.087 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.264 0.736 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 9.726 17.861 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 H 0.058 0.942 4 C -0.547 4.547 5 H 0.105 0.895 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.687 3.313 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.177 1.177 12 C 0.322 3.678 13 O -0.405 6.405 14 N -0.358 5.358 15 C -0.062 4.062 16 C 0.065 3.935 17 H 0.127 0.873 18 C -0.218 4.218 19 C -0.088 4.088 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.133 4.133 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.934 9.030 17.592 20.162 hybrid contribution -0.423 0.969 -0.168 1.071 sum -4.357 10.000 17.424 20.556 Atomic orbital electron populations 1.22178 0.96622 1.01008 0.99899 1.19217 0.93787 0.96598 0.92313 0.94179 1.20819 1.34287 1.12219 0.87339 0.89504 1.24925 0.94882 0.97128 0.95746 1.69974 1.48493 1.35418 0.98633 0.87278 0.79134 0.86420 0.78467 1.20633 1.21141 1.17719 1.21378 0.75779 0.87051 0.83563 1.90573 1.48637 1.16583 1.84679 1.48105 1.62728 1.13350 1.11611 1.21679 0.97853 0.97968 0.88729 1.20119 0.92644 0.82610 0.98143 0.87273 1.22177 0.98209 0.99106 1.02316 1.20199 0.95250 0.98406 0.94909 1.21123 0.92749 0.99261 0.99512 1.21113 0.99141 1.00283 0.93310 1.21122 0.96924 0.99453 0.96780 1.21118 0.93888 1.00068 0.99087 1.21368 1.00118 0.99224 0.92600 0.95266 0.92316 0.92849 0.92620 0.93309 0.90617 0.92101 0.92258 0.91321 0.91492 0.85791 0.86153 0.86426 0.86316 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.15 37.15 0.30 -2.70 16 2 C 0.00 0.06 1.31 -92.93 -0.12 -0.06 16 3 H 0.04 0.89 5.49 -51.92 -0.29 0.61 16 4 C -0.51 -14.74 8.81 -34.44 -0.30 -15.04 16 5 H 0.09 2.88 7.23 -52.48 -0.38 2.50 16 6 C 0.08 2.17 5.33 -17.82 -0.09 2.07 16 7 N -0.89 -27.30 13.96 55.43 0.77 -26.53 16 8 Si 0.86 20.37 25.70 -169.99 -4.37 16.01 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.25 -5.37 5.38 56.52 0.30 -5.06 16 12 C 0.53 12.10 6.78 -10.99 -0.07 12.03 16 13 O -0.53 -14.10 15.31 5.56 0.09 -14.02 16 14 N -0.62 -10.94 2.75 -175.27 -0.48 -11.42 16 15 C 0.08 1.18 8.32 59.84 0.50 1.68 16 16 C 0.17 2.48 2.43 -69.08 -0.17 2.32 16 17 H 0.11 1.73 4.36 -51.93 -0.23 1.51 16 18 C -0.16 -1.94 9.05 37.16 0.34 -1.60 16 19 C -0.09 -1.15 4.96 -104.62 -0.52 -1.67 16 20 C -0.11 -1.36 9.38 -39.59 -0.37 -1.73 16 21 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.12 -1.37 7.79 -39.58 -0.31 -1.68 16 25 H 0.03 0.52 6.37 -51.93 -0.33 0.19 16 26 H 0.06 1.28 4.62 -51.93 -0.24 1.04 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.05 0.68 6.84 -51.93 -0.36 0.32 16 30 H 0.08 1.23 7.32 -51.93 -0.38 0.85 16 31 H 0.06 0.70 5.54 -51.93 -0.29 0.41 16 32 H 0.06 0.64 6.35 -51.93 -0.33 0.31 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.12 1.48 7.65 -52.48 -0.40 1.08 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.38 4.72 -52.49 -0.25 1.13 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -33.48 303.16 -6.67 -40.15 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.23 Total: 2.77 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.02 Total: -11.52 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.29 Total: -37.95 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.37 Total: 16.01 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.48 -6.67 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.513 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds