Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47121 * 2 1 4 4 C 1.50696 * 109.47375 * 240.00434 * 2 1 3 5 5 H 1.08010 * 120.00010 * 242.11553 * 4 2 1 6 6 C 1.37876 * 120.00247 * 62.11092 * 4 2 1 7 7 N 1.31516 * 119.99953 * 195.06696 * 6 4 2 8 8 Si 1.86794 * 119.99990 * 15.06193 * 6 4 2 9 9 H 1.48506 * 109.47138 * 94.96558 * 8 6 4 10 10 H 1.48501 * 109.47236 * 214.96785 * 8 6 4 11 11 H 1.48498 * 109.47072 * 334.96916 * 8 6 4 12 12 C 1.50700 * 109.47357 * 119.99935 * 2 1 3 13 13 O 1.21278 * 119.99840 * 95.98758 * 12 2 1 14 14 N 1.34777 * 120.00342 * 275.98882 * 12 2 1 15 15 C 1.46489 * 120.00282 * 185.36699 * 14 12 2 16 16 C 1.46503 * 119.99664 * 5.36753 * 14 12 2 17 17 H 1.08999 * 109.47281 * 1.52511 * 16 14 12 18 18 C 1.53001 * 109.46915 * 241.52384 * 16 14 12 19 19 C 1.50700 * 109.47261 * 121.52471 * 16 14 12 20 20 C 1.38233 * 120.00361 * 234.14206 * 19 16 14 21 21 C 1.38231 * 120.00245 * 179.78675 * 20 19 16 22 22 C 1.38232 * 120.00012 * 0.43894 * 21 20 19 23 23 C 1.38235 * 119.99843 * 359.81840 * 22 21 20 24 24 C 1.38231 * 120.00226 * 359.97221 * 23 22 21 25 25 H 1.09005 * 109.47382 * 305.51838 * 1 2 3 26 26 H 1.09005 * 109.47501 * 65.51282 * 1 2 3 27 27 H 1.09002 * 109.47388 * 185.51402 * 1 2 3 28 28 H 0.96996 * 119.99774 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47050 * 263.74635 * 15 14 12 30 30 H 1.09005 * 109.47596 * 23.74497 * 15 14 12 31 31 H 1.09004 * 109.47438 * 143.74939 * 15 14 12 32 32 H 1.08999 * 109.47250 * 300.00146 * 18 16 14 33 33 H 1.08996 * 109.46788 * 60.00375 * 18 16 14 34 34 H 1.09003 * 109.46615 * 179.97438 * 18 16 14 35 35 H 1.08005 * 119.99943 * 0.02562 * 20 19 16 36 36 H 1.08008 * 120.00134 * 180.27675 * 21 20 19 37 37 H 1.08000 * 120.00061 * 179.83029 * 22 21 20 38 38 H 1.08000 * 120.00158 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.00379 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6248 -1.6080 -1.1318 6 6 1.7356 -0.2143 -2.4823 7 7 1.9074 -0.9684 -3.5460 8 14 1.0894 1.5285 -2.6673 9 1 2.2192 2.4469 -2.9595 10 1 0.1103 1.5776 -3.7828 11 1 0.4250 1.9465 -1.4067 12 6 2.0323 -0.7104 1.2305 13 8 2.3377 -1.8826 1.1716 14 7 2.1422 -0.0431 2.3963 15 6 2.7399 -0.6986 3.5620 16 6 1.6638 1.3379 2.4977 17 1 1.2301 1.6431 1.5453 18 6 2.8353 2.2594 2.8432 19 6 0.6173 1.4290 3.5783 20 6 -0.6246 1.9654 3.2944 21 6 -1.5860 2.0449 4.2845 22 6 -1.3023 1.5963 5.5609 23 6 -0.0585 1.0648 5.8462 24 6 0.9014 0.9813 4.8550 25 1 -0.3634 0.5971 0.8365 26 1 -0.3634 0.4260 -0.9353 27 1 -0.3634 -1.0229 0.0987 28 1 1.6990 -0.6193 -4.4266 29 1 1.9509 -1.1081 4.1928 30 1 3.3945 -1.5045 3.2299 31 1 3.3190 0.0289 4.1308 32 1 3.2689 1.9542 3.7955 33 1 3.5920 2.1935 2.0616 34 1 2.4793 3.2869 2.9182 35 1 -0.8453 2.3188 2.2979 36 1 -2.5579 2.4599 4.0615 37 1 -2.0524 1.6610 6.3351 38 1 0.1631 0.7140 6.8433 39 1 1.8730 0.5657 5.0777 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596684432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = -22.486578 kcal Electronic energy + Delta-G solvation = -20208.477149 eV Core-core repulsion = 17308.565908 eV Total energy + Delta-G solvation = -2899.911241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40973 -39.86577 -37.11034 -35.84825 -33.37633 -32.86356 -31.73866 -30.15610 -28.36500 -27.20284 -25.02007 -23.71319 -23.34554 -22.05023 -19.91439 -18.95623 -17.81442 -17.66258 -17.14405 -16.48742 -16.08795 -15.81288 -15.54548 -14.96525 -14.88640 -14.59624 -14.27580 -14.20950 -14.01395 -13.63854 -13.35016 -13.11041 -12.97328 -12.91585 -12.79168 -12.60530 -12.34115 -12.21483 -11.76654 -11.66680 -11.42398 -11.31642 -10.62484 -10.49231 -9.76577 -9.64918 -9.59058 -8.29603 -6.32928 0.44494 0.56428 1.36868 1.40823 1.51110 1.81324 2.15212 2.36938 2.96732 3.03317 3.66285 3.82887 3.95069 4.17943 4.22483 4.29375 4.32917 4.39884 4.43507 4.57904 4.64143 4.68093 4.72140 4.79129 4.82721 4.89294 4.93975 5.04392 5.11748 5.21467 5.28967 5.43973 5.52658 5.60716 5.67790 5.69021 5.72740 6.16545 6.22281 6.49794 6.77264 7.25632 7.41548 8.88362 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.006611 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.261124 B = 4234.067013 C = 4750.423442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.003 3.997 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.021 0.979 6 C 0.014 3.986 7 N -0.945 5.945 8 Si 0.936 3.064 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.208 1.208 12 C 0.525 3.475 13 O -0.587 6.587 14 N -0.611 5.611 15 C 0.078 3.922 16 C 0.163 3.837 17 H 0.098 0.902 18 C -0.156 4.156 19 C -0.103 4.103 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.268 0.732 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 13.164 20.579 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.039 0.961 6 C -0.184 4.184 7 N -0.584 5.584 8 Si 0.758 3.242 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.130 1.130 12 C 0.316 3.684 13 O -0.466 6.466 14 N -0.344 5.344 15 C -0.064 4.064 16 C 0.060 3.940 17 H 0.116 0.884 18 C -0.213 4.213 19 C -0.104 4.104 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.142 4.142 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.581 12.514 20.381 24.558 hybrid contribution 0.109 -0.177 -0.911 0.935 sum -5.472 12.337 19.469 23.689 Atomic orbital electron populations 1.22066 0.94716 1.00658 1.01601 1.19146 0.95189 0.96951 0.90611 0.91740 1.20935 1.34217 1.10851 0.90438 0.96103 1.25995 0.95053 1.02637 0.94681 1.70149 1.50407 1.38282 0.99528 0.86069 0.78932 0.78863 0.80368 1.19756 1.20895 1.12991 1.21246 0.75709 0.86452 0.85032 1.90547 1.51422 1.18882 1.85778 1.48054 1.61245 1.14443 1.10630 1.21879 0.98195 0.98406 0.87894 1.20340 0.94259 0.80850 0.98565 0.88393 1.22158 0.96880 0.99682 1.02630 1.20077 0.95182 1.00242 0.94935 1.21287 0.92878 0.99797 1.00280 1.21403 0.99686 0.99976 0.93303 1.21499 0.97402 0.98252 0.97195 1.21445 0.93693 0.99459 0.99892 1.21523 1.00970 0.99299 0.92431 0.91175 0.92221 0.94910 0.92334 0.92078 0.92940 0.88156 0.90712 0.92454 0.89331 0.85441 0.84212 0.83978 0.84033 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.15 71.98 0.59 -4.95 16 2 C 0.00 0.12 1.31 -12.29 -0.02 0.11 16 3 H 0.06 2.74 5.49 -2.38 -0.01 2.73 16 4 C -0.53 -31.98 8.81 25.60 0.23 -31.75 16 5 H 0.02 1.49 7.23 -2.91 -0.02 1.47 16 6 C 0.01 0.81 5.33 84.65 0.45 1.26 16 7 N -0.94 -60.69 13.96 21.45 0.30 -60.39 16 8 Si 0.94 41.48 25.70 68.60 1.76 43.25 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.21 -7.65 5.38 99.48 0.53 -7.12 16 12 C 0.53 24.41 6.78 87.66 0.59 25.01 16 13 O -0.59 -33.08 15.31 -3.02 -0.05 -33.13 16 14 N -0.61 -20.82 2.75 -826.81 -2.28 -23.09 16 15 C 0.08 2.19 8.32 127.77 1.06 3.25 16 16 C 0.16 4.34 2.43 44.24 0.11 4.45 16 17 H 0.10 2.81 4.36 -2.39 -0.01 2.80 16 18 C -0.16 -3.26 9.05 71.98 0.65 -2.61 16 19 C -0.10 -2.42 4.96 -19.87 -0.10 -2.51 16 20 C -0.12 -2.70 9.38 22.27 0.21 -2.49 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 23 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 24 C -0.12 -2.52 7.79 22.27 0.17 -2.35 16 25 H 0.07 2.33 6.37 -2.38 -0.02 2.31 16 26 H 0.06 2.45 4.62 -2.38 -0.01 2.44 16 27 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.06 1.58 6.84 -2.39 -0.02 1.57 16 30 H 0.05 1.73 7.32 -2.38 -0.02 1.71 16 31 H 0.10 2.00 5.54 -2.38 -0.01 1.98 16 32 H 0.07 1.32 6.35 -2.39 -0.02 1.30 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.13 2.58 7.65 -2.91 -0.02 2.56 16 36 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.14 2.43 4.72 -2.91 -0.01 2.41 16 Total: -1.00 -79.11 303.16 5.24 -73.87 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.88 Total: 18.00 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.62 Total: -18.50 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.98 Total: -83.48 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.05 Total: -33.13 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.76 Total: 43.25 kcal Total: -79.11 5.24 -73.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.380 kcal (2) G-P(sol) polarization free energy of solvation -79.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds