Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47061 * 2 1 4 4 C 1.34766 * 120.00152 * 96.37045 * 3 2 1 5 5 O 1.21289 * 120.00124 * 187.34332 * 4 3 2 6 6 C 1.50709 * 120.00231 * 7.33973 * 4 3 2 7 7 H 1.09000 * 109.47052 * 49.41775 * 6 4 3 8 8 C 1.53001 * 109.46919 * 289.42250 * 6 4 3 9 9 C 1.50699 * 109.47293 * 169.42042 * 6 4 3 10 10 H 1.08007 * 119.99932 * 359.97438 * 9 6 4 11 11 C 1.37877 * 119.99744 * 180.02562 * 9 6 4 12 12 N 1.31505 * 119.99935 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99661 * 179.97438 * 11 9 6 14 14 H 1.48505 * 109.47215 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46898 * 119.99670 * 13 11 9 16 16 H 1.48501 * 109.46827 * 239.99710 * 13 11 9 17 17 C 1.39924 * 119.99788 * 276.36701 * 3 2 1 18 18 C 1.38894 * 120.07058 * 7.00924 * 17 3 2 19 19 C 1.38096 * 119.92763 * 179.71974 * 18 17 3 20 20 C 1.38302 * 120.06967 * 0.57971 * 19 18 17 21 21 C 1.38257 * 120.14024 * 359.67495 * 20 19 18 22 22 C 1.50706 * 119.96468 * 180.02562 * 21 20 19 23 23 C 1.38135 * 120.07382 * 0.04407 * 21 20 19 24 24 H 1.08998 * 109.46868 * 187.43479 * 1 2 3 25 25 H 1.09001 * 109.46856 * 307.43124 * 1 2 3 26 26 H 1.08999 * 109.47397 * 67.43036 * 1 2 3 27 27 H 1.09003 * 109.47410 * 240.00164 * 2 1 3 28 28 H 1.09006 * 109.47343 * 119.99765 * 2 1 3 29 29 H 1.08999 * 109.47252 * 183.42959 * 8 6 4 30 30 H 1.09005 * 109.46967 * 303.42529 * 8 6 4 31 31 H 1.08999 * 109.47350 * 63.42556 * 8 6 4 32 32 H 0.97005 * 119.99879 * 180.02562 * 12 11 9 33 33 H 1.08001 * 120.03708 * 359.97438 * 18 17 3 34 34 H 1.08003 * 119.96240 * 180.25358 * 19 18 17 35 35 H 1.08002 * 119.92935 * 179.70481 * 20 19 18 36 36 H 1.08993 * 109.46813 * 270.02461 * 22 21 20 37 37 H 1.09001 * 109.46859 * 30.02229 * 22 21 20 38 38 H 1.09001 * 109.47214 * 150.01805 * 22 21 20 39 39 H 1.07997 * 120.03629 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3650 1.9734 1.1599 5 8 2.6415 3.1542 1.1791 6 6 2.4092 1.1685 2.4332 7 1 2.9814 0.2559 2.2665 8 6 0.9844 0.8067 2.8575 9 6 3.0655 1.9816 3.5191 10 1 3.4160 2.9812 3.3082 11 6 3.2194 1.4491 4.7815 12 7 2.7930 0.2319 5.0382 13 14 4.0335 2.4568 6.1273 14 1 4.4217 3.7841 5.5859 15 1 3.0822 2.6398 7.2528 16 1 5.2444 1.7475 6.6129 17 6 2.1248 2.0856 -1.2043 18 6 1.6336 1.5325 -2.3799 19 6 1.7350 2.2327 -3.5658 20 6 2.3357 3.4783 -3.5859 21 6 2.8304 4.0294 -2.4184 22 6 3.4837 5.3872 -2.4447 23 6 2.7269 3.3366 -1.2278 24 1 -0.3633 -1.0190 0.1330 25 1 -0.3633 0.6246 0.8161 26 1 -0.3634 0.3944 -0.9489 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.0122 0.2772 3.8098 30 1 0.3950 1.7173 2.9652 31 1 0.5308 0.1678 2.0997 32 1 2.9010 -0.1427 5.9265 33 1 1.1691 0.5576 -2.3658 34 1 1.3496 1.8049 -4.4795 35 1 2.4181 4.0219 -4.5155 36 1 4.5519 5.2729 -2.6289 37 1 3.0404 5.9883 -3.2385 38 1 3.3313 5.8824 -1.4857 39 1 3.1139 3.7674 -0.3162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596777644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = -0.901627 kcal Electronic energy + Delta-G solvation = -20003.709526 eV Core-core repulsion = 17104.734279 eV Total energy + Delta-G solvation = -2898.975247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41890 -38.13202 -35.77947 -34.01754 -32.22126 -31.43476 -30.18151 -28.81435 -26.67589 -25.22627 -23.48618 -23.17810 -21.97879 -20.45290 -18.60187 -16.83227 -16.68890 -15.90807 -15.63054 -14.88161 -14.69241 -14.23350 -14.17969 -13.49382 -13.39529 -13.14372 -12.83613 -12.63526 -12.30356 -12.03330 -11.94998 -11.81376 -11.44619 -11.13185 -11.09751 -10.92461 -10.75933 -10.69662 -10.39207 -10.33409 -10.02543 -9.72333 -9.00200 -8.56157 -8.40971 -8.24454 -7.43334 -6.09370 -4.13333 1.63877 1.76725 3.28877 3.35007 3.37722 3.43560 3.48229 4.18990 4.41671 5.01035 5.10194 5.15891 5.24237 5.38015 5.43525 5.47694 5.58172 5.61402 5.75790 5.78911 5.87263 5.92940 6.00876 6.08994 6.22843 6.33423 6.46596 6.58269 6.68714 6.72240 6.79392 6.88064 6.94558 7.03084 7.35619 7.59330 7.69479 7.86525 8.00793 8.24686 8.93224 8.99528 9.52348 10.97872 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.006055 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.045267 B = 4623.314259 C = 5618.777889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 N -0.564 5.564 4 C 0.521 3.479 5 O -0.516 6.516 6 C 0.034 3.966 7 H 0.053 0.947 8 C -0.150 4.150 9 C -0.503 4.503 10 H 0.074 0.926 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.900 3.100 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.174 3.826 18 C -0.179 4.179 19 C -0.096 4.096 20 C -0.163 4.163 21 C -0.067 4.067 22 C -0.111 4.111 23 C -0.169 4.169 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 -0.047 -13.811 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.025 4.025 3 N -0.286 5.286 4 C 0.314 3.686 5 O -0.391 6.391 6 C 0.013 3.987 7 H 0.071 0.929 8 C -0.208 4.208 9 C -0.541 4.541 10 H 0.092 0.908 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.728 3.272 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.078 3.922 18 C -0.200 4.200 19 C -0.115 4.115 20 C -0.182 4.182 21 C -0.067 4.067 22 C -0.168 4.168 23 C -0.189 4.189 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.978 0.415 -13.515 13.846 hybrid contribution 0.274 0.236 0.582 0.686 sum -2.704 0.651 -12.933 13.229 Atomic orbital electron populations 1.22415 0.95665 1.02698 1.02817 1.21779 0.94838 0.81826 1.04074 1.46116 1.62943 1.14140 1.05405 1.22378 0.73043 0.88349 0.84790 1.90251 1.47123 1.16769 1.84951 1.18900 0.96318 0.95677 0.87814 0.92911 1.22120 0.95248 0.99834 1.03575 1.21154 1.37594 1.01611 0.93766 0.90768 1.24929 0.95547 0.95080 0.98541 1.69863 1.46973 1.14799 1.21751 0.86391 0.78986 0.80488 0.81375 1.19534 1.20973 1.21005 1.18159 0.95751 0.92504 0.85815 1.20800 1.05833 1.01355 0.91963 1.20768 0.99040 0.94766 0.96938 1.20855 1.03195 0.96724 0.97475 1.19880 0.97597 0.96356 0.92915 1.20756 1.00049 0.93360 1.02627 1.22470 1.01139 0.94519 1.00772 0.91334 0.90710 0.92642 0.90783 0.87943 0.88550 0.95111 0.94802 0.92912 0.86049 0.86503 0.86928 0.91438 0.92006 0.91324 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 8.97 37.16 0.33 -2.04 16 2 C 0.10 1.47 4.93 -4.04 -0.02 1.45 16 3 N -0.56 -10.62 2.71 -113.45 -0.31 -10.93 16 4 C 0.52 11.90 6.86 -10.99 -0.08 11.82 16 5 O -0.52 -13.00 12.06 5.55 0.07 -12.94 16 6 C 0.03 0.82 1.80 -92.92 -0.17 0.65 16 7 H 0.05 1.31 7.16 -51.93 -0.37 0.94 16 8 C -0.15 -3.35 8.19 37.16 0.30 -3.05 16 9 C -0.50 -13.94 8.36 -34.44 -0.29 -14.23 16 10 H 0.07 2.17 6.81 -52.48 -0.36 1.81 16 11 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 12 N -0.89 -24.48 11.30 55.43 0.63 -23.86 16 13 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.17 3.15 6.46 -83.69 -0.54 2.60 16 18 C -0.18 -2.66 8.72 -39.39 -0.34 -3.01 16 19 C -0.10 -1.29 10.04 -39.61 -0.40 -1.69 16 20 C -0.16 -2.26 9.70 -39.55 -0.38 -2.64 16 21 C -0.07 -1.05 5.88 -104.65 -0.62 -1.66 16 22 C -0.11 -1.43 10.01 36.01 0.36 -1.07 16 23 C -0.17 -3.19 8.62 -39.39 -0.34 -3.53 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.14 6.08 -51.93 -0.32 0.83 16 26 H 0.05 0.69 6.91 -51.93 -0.36 0.33 16 27 H 0.07 0.94 6.91 -51.93 -0.36 0.58 16 28 H 0.10 1.64 5.29 -51.93 -0.27 1.36 16 29 H 0.10 2.38 5.99 -51.93 -0.31 2.07 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.62 3.41 -51.93 -0.18 0.45 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.12 1.55 5.64 -52.49 -0.30 1.25 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.18 3.77 4.74 -55.02 -0.26 3.51 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -29.79 304.72 -7.48 -37.27 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.17 Total: 4.29 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.27 Total: -14.85 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.32 Total: -34.78 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.79 -7.48 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596777644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds