Wall clock time and date at job start Mon Mar 30 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47061 * 2 1 4 4 C 1.34766 * 120.00152 * 96.37045 * 3 2 1 5 5 O 1.21289 * 120.00124 * 187.34332 * 4 3 2 6 6 C 1.50709 * 120.00231 * 7.33973 * 4 3 2 7 7 H 1.09000 * 109.47052 * 49.41775 * 6 4 3 8 8 C 1.53001 * 109.46919 * 289.42250 * 6 4 3 9 9 C 1.50699 * 109.47293 * 169.42042 * 6 4 3 10 10 H 1.08007 * 119.99932 * 359.97438 * 9 6 4 11 11 C 1.37877 * 119.99744 * 180.02562 * 9 6 4 12 12 N 1.31505 * 119.99935 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99661 * 179.97438 * 11 9 6 14 14 H 1.48505 * 109.47215 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46898 * 119.99670 * 13 11 9 16 16 H 1.48501 * 109.46827 * 239.99710 * 13 11 9 17 17 C 1.39924 * 119.99788 * 276.36701 * 3 2 1 18 18 C 1.38894 * 120.07058 * 7.00924 * 17 3 2 19 19 C 1.38096 * 119.92763 * 179.71974 * 18 17 3 20 20 C 1.38302 * 120.06967 * 0.57971 * 19 18 17 21 21 C 1.38257 * 120.14024 * 359.67495 * 20 19 18 22 22 C 1.50706 * 119.96468 * 180.02562 * 21 20 19 23 23 C 1.38135 * 120.07382 * 0.04407 * 21 20 19 24 24 H 1.08998 * 109.46868 * 187.43479 * 1 2 3 25 25 H 1.09001 * 109.46856 * 307.43124 * 1 2 3 26 26 H 1.08999 * 109.47397 * 67.43036 * 1 2 3 27 27 H 1.09003 * 109.47410 * 240.00164 * 2 1 3 28 28 H 1.09006 * 109.47343 * 119.99765 * 2 1 3 29 29 H 1.08999 * 109.47252 * 183.42959 * 8 6 4 30 30 H 1.09005 * 109.46967 * 303.42529 * 8 6 4 31 31 H 1.08999 * 109.47350 * 63.42556 * 8 6 4 32 32 H 0.97005 * 119.99879 * 180.02562 * 12 11 9 33 33 H 1.08001 * 120.03708 * 359.97438 * 18 17 3 34 34 H 1.08003 * 119.96240 * 180.25358 * 19 18 17 35 35 H 1.08002 * 119.92935 * 179.70481 * 20 19 18 36 36 H 1.08993 * 109.46813 * 270.02461 * 22 21 20 37 37 H 1.09001 * 109.46859 * 30.02229 * 22 21 20 38 38 H 1.09001 * 109.47214 * 150.01805 * 22 21 20 39 39 H 1.07997 * 120.03629 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3650 1.9734 1.1599 5 8 2.6415 3.1542 1.1791 6 6 2.4092 1.1685 2.4332 7 1 2.9814 0.2559 2.2665 8 6 0.9844 0.8067 2.8575 9 6 3.0655 1.9816 3.5191 10 1 3.4160 2.9812 3.3082 11 6 3.2194 1.4491 4.7815 12 7 2.7930 0.2319 5.0382 13 14 4.0335 2.4568 6.1273 14 1 4.4217 3.7841 5.5859 15 1 3.0822 2.6398 7.2528 16 1 5.2444 1.7475 6.6129 17 6 2.1248 2.0856 -1.2043 18 6 1.6336 1.5325 -2.3799 19 6 1.7350 2.2327 -3.5658 20 6 2.3357 3.4783 -3.5859 21 6 2.8304 4.0294 -2.4184 22 6 3.4837 5.3872 -2.4447 23 6 2.7269 3.3366 -1.2278 24 1 -0.3633 -1.0190 0.1330 25 1 -0.3633 0.6246 0.8161 26 1 -0.3634 0.3944 -0.9489 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.0122 0.2772 3.8098 30 1 0.3950 1.7173 2.9652 31 1 0.5308 0.1678 2.0997 32 1 2.9010 -0.1427 5.9265 33 1 1.1691 0.5576 -2.3658 34 1 1.3496 1.8049 -4.4795 35 1 2.4181 4.0219 -4.5155 36 1 4.5519 5.2729 -2.6289 37 1 3.0404 5.9883 -3.2385 38 1 3.3313 5.8824 -1.4857 39 1 3.1139 3.7674 -0.3162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596777644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:50 Heat of formation + Delta-G solvation = -17.221556 kcal Electronic energy + Delta-G solvation = -20004.417212 eV Core-core repulsion = 17104.734279 eV Total energy + Delta-G solvation = -2899.682932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89676 -39.50033 -37.26733 -35.94422 -33.47150 -32.91110 -31.79510 -30.15664 -27.82620 -27.22519 -25.09821 -24.40865 -23.39461 -21.81377 -20.09859 -18.55496 -18.10089 -17.73272 -17.03116 -16.60718 -16.16478 -15.63179 -15.51762 -15.03600 -14.59660 -14.49375 -14.37672 -14.03459 -13.83879 -13.26398 -13.17190 -13.06060 -12.96672 -12.90337 -12.69090 -12.32806 -12.29544 -12.26407 -12.09490 -11.96153 -11.84098 -11.04561 -10.99306 -10.56370 -10.03135 -9.57867 -8.76076 -8.18787 -6.29721 0.41799 0.54764 1.37152 1.39328 1.52191 1.78880 1.96927 2.42349 2.96358 3.10595 3.73300 3.98113 4.05950 4.18258 4.28567 4.37972 4.40799 4.52338 4.55165 4.62228 4.68589 4.79065 4.81717 4.89607 4.95567 4.96769 4.99780 5.10353 5.25532 5.32381 5.40745 5.49809 5.56374 5.68643 5.75052 5.81646 5.93438 6.16266 6.28117 6.49779 6.76952 7.28152 7.39611 8.86904 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.006055 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.045267 B = 4623.314259 C = 5618.777889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.088 3.912 3 N -0.558 5.558 4 C 0.515 3.485 5 O -0.554 6.554 6 C 0.033 3.967 7 H 0.044 0.956 8 C -0.135 4.135 9 C -0.532 4.532 10 H 0.046 0.954 11 C 0.023 3.977 12 N -0.907 5.907 13 Si 0.955 3.045 14 H -0.281 1.281 15 H -0.273 1.273 16 H -0.272 1.272 17 C 0.142 3.858 18 C -0.172 4.172 19 C -0.088 4.088 20 C -0.156 4.156 21 C -0.077 4.077 22 C -0.110 4.110 23 C -0.206 4.206 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.015 0.985 31 H 0.073 0.927 32 H 0.266 0.734 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.148 0.852 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -1.077 -16.550 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.033 4.033 3 N -0.280 5.280 4 C 0.308 3.692 5 O -0.433 6.433 6 C 0.012 3.988 7 H 0.062 0.938 8 C -0.193 4.193 9 C -0.570 4.570 10 H 0.064 0.936 11 C -0.176 4.176 12 N -0.546 5.546 13 Si 0.781 3.219 14 H -0.206 1.206 15 H -0.199 1.199 16 H -0.198 1.198 17 C 0.048 3.952 18 C -0.192 4.192 19 C -0.107 4.107 20 C -0.175 4.175 21 C -0.078 4.078 22 C -0.167 4.167 23 C -0.226 4.226 24 H 0.117 0.883 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.919 -0.651 -16.286 16.764 hybrid contribution 0.568 0.559 1.291 1.518 sum -3.351 -0.092 -14.995 15.365 Atomic orbital electron populations 1.22367 0.93896 1.04142 1.02589 1.22081 0.96250 0.79913 1.05024 1.45970 1.62118 1.15309 1.04641 1.22027 0.73522 0.87805 0.85809 1.90274 1.49043 1.18126 1.85835 1.18782 0.96840 0.94909 0.88235 0.93831 1.21957 0.94224 0.99462 1.03606 1.21284 1.39001 1.01107 0.95637 0.93552 1.25551 0.95891 0.96128 1.00075 1.69931 1.46936 1.15378 1.22375 0.85551 0.78640 0.78704 0.79041 1.20631 1.19854 1.19765 1.18416 0.97659 0.92783 0.86383 1.21108 1.04769 1.02350 0.91005 1.21300 0.97392 0.94192 0.97784 1.21290 1.01399 0.97046 0.97758 1.20174 0.97769 0.97195 0.92636 1.20798 1.00729 0.92407 1.02749 1.22268 1.03432 0.96045 1.00841 0.88287 0.93193 0.91238 0.87602 0.89277 0.90739 0.96587 0.90868 0.92447 0.83427 0.82281 0.83469 0.90491 0.89194 0.93070 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.97 71.98 0.65 -3.50 16 2 C 0.09 2.53 4.93 86.38 0.43 2.96 16 3 N -0.56 -21.33 2.71 -631.23 -1.71 -23.04 16 4 C 0.52 24.87 6.86 87.66 0.60 25.47 16 5 O -0.55 -30.26 12.06 -3.06 -0.04 -30.30 16 6 C 0.03 1.70 1.80 -12.28 -0.02 1.68 16 7 H 0.04 2.27 7.16 -2.39 -0.02 2.25 16 8 C -0.13 -6.21 8.19 71.98 0.59 -5.62 16 9 C -0.53 -31.07 8.36 25.60 0.21 -30.86 16 10 H 0.05 2.91 6.81 -2.91 -0.02 2.89 16 11 C 0.02 1.29 5.30 84.66 0.45 1.74 16 12 N -0.91 -50.43 11.30 21.45 0.24 -50.19 16 13 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 14 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 17 C 0.14 5.12 6.46 38.15 0.25 5.36 16 18 C -0.17 -4.58 8.72 22.39 0.20 -4.38 16 19 C -0.09 -1.96 10.04 22.25 0.22 -1.74 16 20 C -0.16 -3.74 9.70 22.29 0.22 -3.53 16 21 C -0.08 -2.36 5.88 -19.88 -0.12 -2.47 16 22 C -0.11 -2.76 10.01 71.24 0.71 -2.05 16 23 C -0.21 -8.03 8.62 22.39 0.19 -7.84 16 24 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.46 6.08 -2.39 -0.01 1.45 16 26 H 0.07 1.49 6.91 -2.39 -0.02 1.47 16 27 H 0.11 2.36 6.91 -2.39 -0.02 2.34 16 28 H 0.09 2.80 5.29 -2.38 -0.01 2.78 16 29 H 0.07 3.76 5.99 -2.39 -0.01 3.75 16 30 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 2.72 3.41 -2.39 -0.01 2.71 16 32 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 33 H 0.15 3.07 5.64 -2.91 -0.02 3.05 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 38 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.14 6.44 4.74 -43.02 -0.20 6.24 16 Total: -1.00 -69.20 304.72 5.96 -63.24 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.87 Total: 18.02 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.57 Total: -24.78 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.47 Total: -73.23 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.04 Total: -30.30 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.20 5.96 -63.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596777644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.017 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds