Wall clock time and date at job start Mon Mar 30 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46682 * 2 1 4 4 C 1.34770 * 120.00253 * 263.37843 * 3 2 1 5 5 O 1.21287 * 120.00481 * 186.33867 * 4 3 2 6 6 C 1.50700 * 119.99885 * 6.33322 * 4 3 2 7 7 H 1.09002 * 109.47052 * 337.65774 * 6 4 3 8 8 C 1.52999 * 109.47369 * 97.65614 * 6 4 3 9 9 C 1.50705 * 109.47308 * 217.65736 * 6 4 3 10 10 H 1.07991 * 119.99735 * 0.02562 * 9 6 4 11 11 C 1.37877 * 119.99795 * 179.97438 * 9 6 4 12 12 N 1.31510 * 120.00235 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 119.99793 * 180.02562 * 11 9 6 14 14 H 1.48495 * 109.47430 * 89.99899 * 13 11 9 15 15 H 1.48503 * 109.47160 * 210.00248 * 13 11 9 16 16 H 1.48504 * 109.47074 * 329.99458 * 13 11 9 17 17 C 1.39923 * 119.99857 * 83.38362 * 3 2 1 18 18 C 1.38892 * 120.07148 * 355.47243 * 17 3 2 19 19 C 1.38091 * 119.93000 * 179.97438 * 18 17 3 20 20 C 1.38304 * 120.06855 * 359.74968 * 19 18 17 21 21 C 1.38259 * 120.14292 * 0.50893 * 20 19 18 22 22 C 1.50695 * 119.96487 * 179.76523 * 21 20 19 23 23 C 1.38138 * 120.06876 * 359.49023 * 21 20 19 24 24 H 1.09005 * 109.47135 * 289.91251 * 1 2 3 25 25 H 1.08990 * 109.47280 * 49.91865 * 1 2 3 26 26 H 1.08997 * 109.46955 * 169.92235 * 1 2 3 27 27 H 1.09001 * 109.46748 * 240.00412 * 2 1 3 28 28 H 1.08997 * 109.47155 * 120.00098 * 2 1 3 29 29 H 1.09004 * 109.47055 * 49.73419 * 8 6 4 30 30 H 1.08998 * 109.47767 * 169.73272 * 8 6 4 31 31 H 1.08998 * 109.47317 * 289.73919 * 8 6 4 32 32 H 0.97007 * 120.00099 * 179.97438 * 12 11 9 33 33 H 1.07998 * 120.03411 * 0.02562 * 18 17 3 34 34 H 1.07999 * 119.96814 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.92776 * 180.27273 * 20 19 18 36 36 H 1.09002 * 109.47501 * 269.72432 * 22 21 20 37 37 H 1.09005 * 109.47373 * 29.72499 * 22 21 20 38 38 H 1.09008 * 109.47300 * 149.72247 * 22 21 20 39 39 H 1.08000 * 120.03307 * 180.23992 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 1.9718 -1.1593 5 8 2.8811 3.0716 -1.1492 6 6 2.1276 1.2656 -2.4684 7 1 2.0483 0.1926 -2.2931 8 6 0.8275 1.7779 -3.0915 9 6 3.2755 1.5380 -3.4061 10 1 4.0983 2.1599 -3.0859 11 6 3.2757 0.9923 -4.6723 12 7 2.2745 0.2337 -5.0616 13 14 4.6989 1.3293 -5.8343 14 1 5.7420 0.2877 -5.6547 15 1 4.2100 1.3038 -7.2363 16 1 5.2761 2.6646 -5.5357 17 6 2.1198 2.0874 1.2037 18 6 1.6705 1.5146 2.3866 19 6 1.7726 2.2139 3.5730 20 6 2.3262 3.4813 3.5849 21 6 2.7695 4.0563 2.4083 22 6 3.3673 5.4396 2.4252 23 6 2.6702 3.3620 1.2183 24 1 -0.3634 0.3500 0.9663 25 1 -0.3633 0.6616 -0.7862 26 1 -0.3633 -1.0118 -0.1798 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.8331 2.8679 -3.0991 30 1 0.7437 1.4080 -4.1133 31 1 -0.0206 1.4231 -2.5059 32 1 2.2744 -0.1499 -5.9525 33 1 1.2425 0.5231 2.3786 34 1 1.4238 1.7690 4.4932 35 1 2.4090 4.0244 4.5147 36 1 2.5800 6.1776 2.2710 37 1 3.8474 5.6163 3.3877 38 1 4.1069 5.5255 1.6290 39 1 3.0203 3.8103 0.3001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596777645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:52 Heat of formation + Delta-G solvation = -2.508009 kcal Electronic energy + Delta-G solvation = -19966.854997 eV Core-core repulsion = 17067.810092 eV Total energy + Delta-G solvation = -2899.044905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39497 -38.11092 -35.74543 -34.00237 -32.18746 -31.30019 -30.30853 -28.76354 -26.65937 -25.30328 -23.62219 -23.17695 -21.93718 -20.40488 -18.49708 -16.99583 -16.67102 -16.10118 -15.61908 -14.75093 -14.70756 -14.20123 -14.09327 -13.44178 -13.34779 -13.04536 -12.84162 -12.64467 -12.40719 -12.02350 -11.90365 -11.77619 -11.50609 -11.20680 -11.11695 -11.04033 -10.81789 -10.74653 -10.49420 -10.23629 -10.07751 -9.72857 -9.07801 -8.53802 -8.39056 -8.19193 -7.44570 -6.12657 -4.18098 1.64705 1.78463 3.27665 3.33670 3.36213 3.41759 3.47784 4.19688 4.38744 5.01215 5.11120 5.15903 5.21168 5.38179 5.44673 5.49390 5.59752 5.61787 5.77533 5.79436 5.88062 5.93998 6.02456 6.09306 6.23177 6.31499 6.48230 6.62095 6.70287 6.74610 6.84858 6.90570 6.97779 7.03566 7.34393 7.62282 7.68506 7.83551 7.99113 8.21223 8.85240 8.98615 9.46929 10.93756 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.005911 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.134287 B = 4735.801629 C = 5518.479216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 N -0.562 5.562 4 C 0.525 3.475 5 O -0.519 6.519 6 C 0.032 3.968 7 H 0.052 0.948 8 C -0.132 4.132 9 C -0.504 4.504 10 H 0.066 0.934 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.172 3.828 18 C -0.179 4.179 19 C -0.097 4.097 20 C -0.164 4.164 21 C -0.068 4.068 22 C -0.111 4.111 23 C -0.179 4.179 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.016 0.984 32 H 0.263 0.737 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 0.731 13.287 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.028 4.028 3 N -0.284 5.284 4 C 0.319 3.681 5 O -0.395 6.395 6 C 0.012 3.988 7 H 0.070 0.930 8 C -0.190 4.190 9 C -0.542 4.542 10 H 0.085 0.915 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.728 3.272 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.197 1.197 17 C 0.076 3.924 18 C -0.200 4.200 19 C -0.116 4.116 20 C -0.183 4.183 21 C -0.068 4.068 22 C -0.167 4.167 23 C -0.198 4.198 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.855 1.161 13.001 13.362 hybrid contribution 0.543 -0.086 -0.412 0.687 sum -2.311 1.075 12.590 12.845 Atomic orbital electron populations 1.22266 0.95565 1.02699 1.02561 1.21822 0.94944 0.81779 1.04227 1.46101 1.62599 1.14158 1.05499 1.22370 0.74451 0.85808 0.85503 1.90139 1.41933 1.21507 1.85958 1.19014 0.96952 0.96035 0.86838 0.92998 1.21747 0.94047 0.98999 1.04163 1.20992 1.04418 1.30995 0.97795 0.91535 1.24915 0.96364 0.94788 0.97876 1.69859 1.30580 1.32959 1.19624 0.86441 0.82090 0.78950 0.79730 1.20585 1.21097 1.19666 1.18204 0.96157 0.92242 0.85777 1.20794 1.06393 1.01012 0.91751 1.20760 0.99148 0.94736 0.96913 1.20865 1.03622 0.96332 0.97480 1.19913 0.97688 0.96216 0.93018 1.20749 1.00490 0.93255 1.02232 1.22880 1.01603 0.94003 1.01325 0.92686 0.91329 0.91353 0.87751 0.90690 0.94975 0.88291 0.96467 0.92729 0.86078 0.86525 0.86976 0.91455 0.92042 0.91374 0.79775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.04 37.16 0.37 -1.97 16 2 C 0.09 1.46 5.32 -4.04 -0.02 1.44 16 3 N -0.56 -10.72 2.71 -113.46 -0.31 -11.03 16 4 C 0.52 12.01 6.54 -10.99 -0.07 11.94 16 5 O -0.52 -13.02 12.61 5.55 0.07 -12.95 16 6 C 0.03 0.79 2.26 -92.92 -0.21 0.58 16 7 H 0.05 1.24 5.48 -51.93 -0.28 0.96 16 8 C -0.13 -3.08 9.09 37.16 0.34 -2.74 16 9 C -0.50 -13.80 8.32 -34.44 -0.29 -14.09 16 10 H 0.07 1.91 7.32 -52.49 -0.38 1.53 16 11 C 0.06 1.67 5.26 -17.82 -0.09 1.57 16 12 N -0.89 -24.16 11.30 55.43 0.63 -23.53 16 13 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.17 3.15 6.47 -83.69 -0.54 2.61 16 18 C -0.18 -2.70 8.76 -39.39 -0.35 -3.04 16 19 C -0.10 -1.32 10.04 -39.61 -0.40 -1.71 16 20 C -0.16 -2.29 9.69 -39.55 -0.38 -2.67 16 21 C -0.07 -1.07 5.88 -104.65 -0.62 -1.68 16 22 C -0.11 -1.42 10.01 36.00 0.36 -1.06 16 23 C -0.18 -3.39 8.71 -39.39 -0.34 -3.73 16 24 H 0.05 0.69 7.08 -51.93 -0.37 0.32 16 25 H 0.07 1.07 6.30 -51.93 -0.33 0.74 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.72 5.59 -51.93 -0.29 1.43 16 28 H 0.07 0.98 6.80 -51.93 -0.35 0.62 16 29 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.10 2.52 5.87 -51.93 -0.30 2.21 16 31 H 0.02 0.34 6.30 -51.93 -0.33 0.01 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.12 1.57 5.70 -52.49 -0.30 1.27 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.07 0.90 8.09 -51.92 -0.42 0.48 16 39 H 0.19 3.98 4.50 -56.36 -0.25 3.73 16 LS Contribution 309.79 15.07 4.67 4.67 Total: -1.00 -29.41 309.79 -7.48 -36.89 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.28 Total: 4.40 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.24 Total: -14.58 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.32 Total: -34.56 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.41 -7.48 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596777645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.382 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds