Wall clock time and date at job start Mon Mar 30 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46682 * 2 1 4 4 C 1.34770 * 120.00253 * 263.37843 * 3 2 1 5 5 O 1.21287 * 120.00481 * 186.33867 * 4 3 2 6 6 C 1.50700 * 119.99885 * 6.33322 * 4 3 2 7 7 H 1.09002 * 109.47052 * 337.65774 * 6 4 3 8 8 C 1.52999 * 109.47369 * 97.65614 * 6 4 3 9 9 C 1.50705 * 109.47308 * 217.65736 * 6 4 3 10 10 H 1.07991 * 119.99735 * 0.02562 * 9 6 4 11 11 C 1.37877 * 119.99795 * 179.97438 * 9 6 4 12 12 N 1.31510 * 120.00235 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 119.99793 * 180.02562 * 11 9 6 14 14 H 1.48495 * 109.47430 * 89.99899 * 13 11 9 15 15 H 1.48503 * 109.47160 * 210.00248 * 13 11 9 16 16 H 1.48504 * 109.47074 * 329.99458 * 13 11 9 17 17 C 1.39923 * 119.99857 * 83.38362 * 3 2 1 18 18 C 1.38892 * 120.07148 * 355.47243 * 17 3 2 19 19 C 1.38091 * 119.93000 * 179.97438 * 18 17 3 20 20 C 1.38304 * 120.06855 * 359.74968 * 19 18 17 21 21 C 1.38259 * 120.14292 * 0.50893 * 20 19 18 22 22 C 1.50695 * 119.96487 * 179.76523 * 21 20 19 23 23 C 1.38138 * 120.06876 * 359.49023 * 21 20 19 24 24 H 1.09005 * 109.47135 * 289.91251 * 1 2 3 25 25 H 1.08990 * 109.47280 * 49.91865 * 1 2 3 26 26 H 1.08997 * 109.46955 * 169.92235 * 1 2 3 27 27 H 1.09001 * 109.46748 * 240.00412 * 2 1 3 28 28 H 1.08997 * 109.47155 * 120.00098 * 2 1 3 29 29 H 1.09004 * 109.47055 * 49.73419 * 8 6 4 30 30 H 1.08998 * 109.47767 * 169.73272 * 8 6 4 31 31 H 1.08998 * 109.47317 * 289.73919 * 8 6 4 32 32 H 0.97007 * 120.00099 * 179.97438 * 12 11 9 33 33 H 1.07998 * 120.03411 * 0.02562 * 18 17 3 34 34 H 1.07999 * 119.96814 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.92776 * 180.27273 * 20 19 18 36 36 H 1.09002 * 109.47501 * 269.72432 * 22 21 20 37 37 H 1.09005 * 109.47373 * 29.72499 * 22 21 20 38 38 H 1.09008 * 109.47300 * 149.72247 * 22 21 20 39 39 H 1.08000 * 120.03307 * 180.23992 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 1.9718 -1.1593 5 8 2.8811 3.0716 -1.1492 6 6 2.1276 1.2656 -2.4684 7 1 2.0483 0.1926 -2.2931 8 6 0.8275 1.7779 -3.0915 9 6 3.2755 1.5380 -3.4061 10 1 4.0983 2.1599 -3.0859 11 6 3.2757 0.9923 -4.6723 12 7 2.2745 0.2337 -5.0616 13 14 4.6989 1.3293 -5.8343 14 1 5.7420 0.2877 -5.6547 15 1 4.2100 1.3038 -7.2363 16 1 5.2761 2.6646 -5.5357 17 6 2.1198 2.0874 1.2037 18 6 1.6705 1.5146 2.3866 19 6 1.7726 2.2139 3.5730 20 6 2.3262 3.4813 3.5849 21 6 2.7695 4.0563 2.4083 22 6 3.3673 5.4396 2.4252 23 6 2.6702 3.3620 1.2183 24 1 -0.3634 0.3500 0.9663 25 1 -0.3633 0.6616 -0.7862 26 1 -0.3633 -1.0118 -0.1798 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.8331 2.8679 -3.0991 30 1 0.7437 1.4080 -4.1133 31 1 -0.0206 1.4231 -2.5059 32 1 2.2744 -0.1499 -5.9525 33 1 1.2425 0.5231 2.3786 34 1 1.4238 1.7690 4.4932 35 1 2.4090 4.0244 4.5147 36 1 2.5800 6.1776 2.2710 37 1 3.8474 5.6163 3.3877 38 1 4.1069 5.5255 1.6290 39 1 3.0203 3.8103 0.3001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596777645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:52 Heat of formation + Delta-G solvation = -18.222465 kcal Electronic energy + Delta-G solvation = -19967.536427 eV Core-core repulsion = 17067.810092 eV Total energy + Delta-G solvation = -2899.726335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87840 -39.49054 -37.21760 -35.95254 -33.38723 -32.82741 -31.92064 -30.11198 -27.78569 -27.34563 -25.25383 -24.42153 -23.34061 -21.77440 -20.03458 -18.70077 -18.09314 -17.85885 -17.07194 -16.48172 -16.22579 -15.54726 -15.34910 -15.00350 -14.60165 -14.52832 -14.30777 -13.94557 -13.90083 -13.44182 -13.17911 -13.04706 -12.98143 -12.89460 -12.67882 -12.61924 -12.38849 -12.31635 -12.13467 -11.95081 -11.78855 -11.07720 -11.01893 -10.55654 -9.91462 -9.58782 -8.77762 -8.19468 -6.31722 0.41683 0.55648 1.38960 1.40638 1.51419 1.79771 1.96046 2.42142 2.96407 3.09521 3.71614 3.96470 4.05563 4.17610 4.27604 4.35415 4.41656 4.49167 4.54346 4.64374 4.65551 4.79304 4.80475 4.89271 4.93422 4.97817 5.05027 5.11064 5.24579 5.33547 5.36581 5.49940 5.56644 5.65514 5.76308 5.82236 5.87374 6.13719 6.29221 6.49749 6.71723 7.27910 7.37612 8.85601 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.005911 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.134287 B = 4735.801629 C = 5518.479216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.088 3.912 3 N -0.558 5.558 4 C 0.519 3.481 5 O -0.556 6.556 6 C 0.031 3.969 7 H 0.055 0.945 8 C -0.120 4.120 9 C -0.531 4.531 10 H 0.040 0.960 11 C 0.026 3.974 12 N -0.904 5.904 13 Si 0.955 3.045 14 H -0.270 1.270 15 H -0.273 1.273 16 H -0.281 1.281 17 C 0.141 3.859 18 C -0.173 4.173 19 C -0.089 4.089 20 C -0.157 4.157 21 C -0.078 4.078 22 C -0.110 4.110 23 C -0.215 4.215 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.016 0.984 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.268 0.732 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 -0.261 15.975 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 N -0.279 5.279 4 C 0.312 3.688 5 O -0.435 6.435 6 C 0.010 3.990 7 H 0.073 0.927 8 C -0.178 4.178 9 C -0.569 4.569 10 H 0.059 0.941 11 C -0.174 4.174 12 N -0.543 5.543 13 Si 0.781 3.219 14 H -0.196 1.196 15 H -0.198 1.198 16 H -0.207 1.207 17 C 0.046 3.954 18 C -0.193 4.193 19 C -0.107 4.107 20 C -0.176 4.176 21 C -0.078 4.078 22 C -0.166 4.166 23 C -0.235 4.235 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.611 0.138 15.721 16.131 hybrid contribution 0.756 0.234 -1.116 1.368 sum -2.855 0.373 14.605 14.886 Atomic orbital electron populations 1.22211 0.93779 1.03777 1.02510 1.22079 0.96393 0.79942 1.04904 1.45978 1.61841 1.15214 1.04868 1.22034 0.74834 0.85439 0.86463 1.90176 1.43677 1.22854 1.86820 1.18923 0.96168 0.96312 0.87558 0.92725 1.21574 0.94981 0.97832 1.03379 1.21118 1.05095 1.31407 0.99300 0.94148 1.25533 0.98541 0.94499 0.98843 1.69922 1.31383 1.32920 1.20076 0.85599 0.79660 0.78371 0.78307 1.19555 1.19832 1.20675 1.18458 0.98116 0.92484 0.86333 1.21096 1.05364 1.02047 0.90839 1.21286 0.97402 0.94277 0.97771 1.21300 1.01818 0.96657 0.97797 1.20208 0.97725 0.97181 0.92715 1.20793 1.00458 0.92143 1.03231 1.22655 1.03965 0.95405 1.01428 0.91146 0.93787 0.88739 0.89379 0.87631 0.96496 0.90251 0.93720 0.92295 0.83560 0.82353 0.83520 0.90600 0.89214 0.92936 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.04 71.98 0.72 -3.41 16 2 C 0.09 2.61 5.32 86.38 0.46 3.07 16 3 N -0.56 -21.60 2.71 -631.25 -1.71 -23.31 16 4 C 0.52 25.00 6.54 87.66 0.57 25.57 16 5 O -0.56 -30.04 12.61 -3.05 -0.04 -30.08 16 6 C 0.03 1.58 2.26 -12.28 -0.03 1.55 16 7 H 0.06 2.71 5.48 -2.39 -0.01 2.69 16 8 C -0.12 -5.80 9.09 71.98 0.65 -5.14 16 9 C -0.53 -30.46 8.32 25.60 0.21 -30.24 16 10 H 0.04 2.47 7.32 -2.92 -0.02 2.45 16 11 C 0.03 1.43 5.26 84.66 0.45 1.87 16 12 N -0.90 -49.60 11.30 21.45 0.24 -49.36 16 13 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 C 0.14 5.11 6.47 38.15 0.25 5.36 16 18 C -0.17 -4.70 8.76 22.39 0.20 -4.50 16 19 C -0.09 -2.02 10.04 22.25 0.22 -1.79 16 20 C -0.16 -3.80 9.69 22.29 0.22 -3.59 16 21 C -0.08 -2.38 5.88 -19.88 -0.12 -2.50 16 22 C -0.11 -2.74 10.01 71.23 0.71 -2.02 16 23 C -0.21 -8.40 8.71 22.39 0.20 -8.20 16 24 H 0.07 1.54 7.08 -2.38 -0.02 1.52 16 25 H 0.04 1.32 6.30 -2.39 -0.02 1.30 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 2.90 5.59 -2.39 -0.01 2.89 16 28 H 0.11 2.47 6.80 -2.39 -0.02 2.45 16 29 H 0.02 0.81 8.11 -2.38 -0.02 0.79 16 30 H 0.08 4.15 5.87 -2.39 -0.01 4.14 16 31 H 0.04 1.85 6.30 -2.39 -0.02 1.84 16 32 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 33 H 0.15 3.14 5.70 -2.91 -0.02 3.12 16 34 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.69 8.08 -2.38 -0.02 1.67 16 38 H 0.05 1.45 8.09 -2.38 -0.02 1.43 16 39 H 0.15 6.95 4.50 -64.21 -0.29 6.66 16 Total: -1.00 -67.39 309.79 6.01 -61.38 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.78 Total: 19.15 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.71 Total: -23.98 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -1.47 Total: -72.66 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.04 Total: -30.08 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.39 6.01 -61.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596777645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.159 kcal (2) G-P(sol) polarization free energy of solvation -67.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds