Wall clock time and date at job start Mon Mar 30 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47367 * 2 1 4 4 C 1.34776 * 120.00164 * 275.10570 * 3 2 1 5 5 O 1.21287 * 119.99729 * 355.32900 * 4 3 2 6 6 C 1.50701 * 120.00090 * 175.32668 * 4 3 2 7 7 H 1.08997 * 109.47225 * 11.05759 * 6 4 3 8 8 C 1.53008 * 109.47254 * 251.06213 * 6 4 3 9 9 C 1.50696 * 109.47093 * 131.06313 * 6 4 3 10 10 H 1.08001 * 120.00042 * 5.08019 * 9 6 4 11 11 C 1.37876 * 120.00236 * 185.08135 * 9 6 4 12 12 N 1.31519 * 120.00343 * 197.67608 * 11 9 6 13 13 Si 1.86807 * 119.99864 * 17.67484 * 11 9 6 14 14 H 1.48492 * 109.46949 * 95.37204 * 13 11 9 15 15 H 1.48502 * 109.47207 * 215.37425 * 13 11 9 16 16 H 1.48501 * 109.46939 * 335.37410 * 13 11 9 17 17 C 1.39919 * 120.00012 * 95.10211 * 3 2 1 18 18 C 1.38896 * 120.07412 * 270.27454 * 17 3 2 19 19 C 1.38092 * 119.92584 * 180.31807 * 18 17 3 20 20 C 1.38300 * 120.07618 * 359.68229 * 19 18 17 21 21 C 1.38264 * 120.13755 * 0.02562 * 20 19 18 22 22 C 1.38133 * 120.07238 * 0.04285 * 21 20 19 23 23 C 1.50694 * 120.03647 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47076 * 299.99888 * 1 2 3 25 25 H 1.09003 * 109.46714 * 60.00247 * 1 2 3 26 26 H 1.08994 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47327 * 240.00110 * 2 1 3 28 28 H 1.09000 * 109.47252 * 120.00283 * 2 1 3 29 29 H 1.09000 * 109.47005 * 62.30835 * 8 6 4 30 30 H 1.08999 * 109.47258 * 182.31204 * 8 6 4 31 31 H 1.09011 * 109.46720 * 302.31100 * 8 6 4 32 32 H 0.96996 * 120.00116 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.03577 * 0.02562 * 18 17 3 34 34 H 1.08005 * 119.96152 * 179.70823 * 19 18 17 35 35 H 1.08001 * 119.93027 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.96237 * 180.02562 * 21 20 19 37 37 H 1.08994 * 109.47114 * 89.99386 * 23 22 21 38 38 H 1.08994 * 109.47177 * 209.99969 * 23 22 21 39 39 H 1.09008 * 109.47103 * 329.99683 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1451 2.0512 -1.1625 5 8 1.9363 1.4849 -2.2146 6 6 2.5463 3.5038 -1.1552 7 1 2.8782 3.7840 -0.1556 8 6 1.3471 4.3661 -1.5547 9 6 3.6693 3.7197 -2.1365 10 1 3.9990 2.9074 -2.7672 11 6 4.2760 4.9544 -2.2292 12 7 4.9946 5.2562 -3.2886 13 14 4.0774 6.1986 -0.8500 14 1 5.2355 6.1020 0.0743 15 1 4.0142 7.5671 -1.4232 16 1 2.8244 5.9156 -0.1049 17 6 2.3532 2.0048 1.2069 18 6 1.3897 2.7094 1.9171 19 6 1.7251 3.3293 3.1046 20 6 3.0171 3.2436 3.5904 21 6 3.9771 2.5379 2.8889 22 6 3.6484 1.9168 1.6996 23 6 4.6955 1.1484 0.9354 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5496 4.2411 -0.8222 30 1 1.6479 5.4132 -1.5893 31 1 0.9894 4.0581 -2.5373 32 1 5.4217 6.1246 -3.3537 33 1 0.3804 2.7763 1.5386 34 1 0.9774 3.8812 3.6549 35 1 3.2768 3.7290 4.5196 36 1 4.9851 2.4725 3.2710 37 1 4.6976 0.1098 1.2662 38 1 4.4711 1.1899 -0.1303 39 1 5.6754 1.5897 1.1178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596836145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:54 Heat of formation + Delta-G solvation = -12.042608 kcal Electronic energy + Delta-G solvation = -20638.840373 eV Core-core repulsion = 17739.382017 eV Total energy + Delta-G solvation = -2899.458356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27502 -38.23492 -35.20326 -33.75532 -32.50312 -31.57069 -30.67339 -28.95221 -26.56066 -25.16221 -23.97850 -22.61240 -21.64323 -21.01066 -18.73657 -16.91416 -16.61283 -16.00476 -15.54671 -15.40835 -14.56748 -14.15326 -13.59027 -13.48120 -13.41119 -13.11357 -13.00330 -12.67759 -12.41131 -12.19973 -12.06985 -11.83370 -11.75508 -11.51744 -11.10819 -11.01449 -10.92010 -10.77647 -10.57140 -10.31925 -9.69230 -9.30053 -9.04272 -8.58311 -8.45225 -8.37570 -8.17384 -6.11738 -4.05533 1.44502 1.54769 3.26194 3.36079 3.39306 3.47797 3.51667 3.87652 4.40627 5.04652 5.05709 5.09211 5.18457 5.19598 5.42821 5.44739 5.53010 5.60416 5.69355 5.85584 5.89232 5.92664 6.04669 6.12868 6.19037 6.31887 6.33939 6.48466 6.54192 6.58390 6.61557 6.63401 6.81518 6.86087 7.01892 7.18082 7.28338 7.61928 8.06049 8.48466 8.99420 9.02932 9.51693 11.00881 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.010012 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.525852 B = 2795.863243 C = 3559.612487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.588 5.588 4 C 0.542 3.458 5 O -0.533 6.533 6 C 0.004 3.996 7 H 0.043 0.957 8 C -0.131 4.131 9 C -0.509 4.509 10 H 0.079 0.921 11 C 0.081 3.919 12 N -0.884 5.884 13 Si 0.857 3.143 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.254 1.254 17 C 0.150 3.850 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.075 4.075 23 C -0.115 4.115 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 -6.319 14.982 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.321 5.321 4 C 0.334 3.666 5 O -0.407 6.407 6 C -0.018 4.018 7 H 0.061 0.939 8 C -0.189 4.189 9 C -0.547 4.547 10 H 0.097 0.903 11 C -0.122 4.122 12 N -0.521 5.521 13 Si 0.684 3.316 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.178 1.178 17 C 0.059 3.941 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.134 4.134 22 C -0.076 4.076 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.701 -6.506 14.236 16.658 hybrid contribution 0.001 0.889 0.767 1.174 sum -5.700 -5.616 15.003 17.004 Atomic orbital electron populations 1.22136 0.96323 1.01674 1.02295 1.21336 0.94099 0.82729 1.02537 1.45766 1.67665 1.13670 1.04980 1.21496 0.73685 0.89999 0.81434 1.90571 1.49646 1.70025 1.30463 1.19247 0.96232 0.87004 0.99299 0.93918 1.21985 0.96644 1.00082 1.00174 1.20624 1.15605 0.98563 1.19872 0.90290 1.24852 0.95062 0.97290 0.94964 1.69996 1.33794 1.22190 1.26119 0.87203 0.79405 0.81130 0.83893 1.20419 1.21157 1.17840 1.17339 0.92249 0.97031 0.87478 1.21394 0.99365 0.97472 0.95098 1.20962 0.96688 1.00166 0.96268 1.21114 0.93392 0.99295 0.99979 1.20942 0.99513 0.98274 0.94681 1.20232 0.94232 0.98100 0.95060 1.20755 0.96770 0.98434 1.01180 0.92810 0.92069 0.92013 0.90022 0.91205 0.95775 0.92743 0.92539 0.92580 0.85966 0.86046 0.86145 0.85853 0.91670 0.90367 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.20 37.16 0.38 -1.82 16 2 C 0.11 1.73 6.11 -4.04 -0.02 1.71 16 3 N -0.59 -10.74 1.65 -113.45 -0.19 -10.92 16 4 C 0.54 12.36 5.74 -10.99 -0.06 12.30 16 5 O -0.53 -13.72 16.22 5.55 0.09 -13.63 16 6 C 0.00 0.09 1.89 -92.92 -0.18 -0.08 16 7 H 0.04 1.03 4.76 -51.93 -0.25 0.78 16 8 C -0.13 -3.00 8.55 37.16 0.32 -2.68 16 9 C -0.51 -14.70 8.78 -34.44 -0.30 -15.00 16 10 H 0.08 2.57 7.78 -52.49 -0.41 2.16 16 11 C 0.08 2.35 5.32 -17.82 -0.09 2.25 16 12 N -0.88 -27.08 13.96 55.43 0.77 -26.31 16 13 Si 0.86 21.11 25.85 -169.99 -4.39 16.72 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.25 -5.91 5.63 56.52 0.32 -5.59 16 17 C 0.15 2.52 3.18 -83.69 -0.27 2.26 16 18 C -0.11 -1.71 9.91 -39.39 -0.39 -2.10 16 19 C -0.12 -1.59 10.04 -39.61 -0.40 -1.99 16 20 C -0.12 -1.51 10.04 -39.55 -0.40 -1.91 16 21 C -0.12 -1.60 9.70 -39.61 -0.38 -1.98 16 22 C -0.07 -1.20 5.78 -104.43 -0.60 -1.80 16 23 C -0.11 -1.79 9.77 36.00 0.35 -1.44 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.33 7.52 -51.93 -0.39 0.94 16 28 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.25 5.27 -51.93 -0.27 0.98 16 31 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.48 6.90 -51.93 -0.36 1.12 16 39 H 0.07 0.99 8.09 -51.92 -0.42 0.57 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -32.75 320.22 -6.90 -39.65 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.96 Total: 1.95 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.05 Total: -12.29 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.59 Total: -37.23 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.39 Total: 16.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.75 -6.90 -39.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596836145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.607 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds