Wall clock time and date at job start Mon Mar 30 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47367 * 2 1 4 4 C 1.34776 * 120.00164 * 275.10570 * 3 2 1 5 5 O 1.21287 * 119.99729 * 355.32900 * 4 3 2 6 6 C 1.50701 * 120.00090 * 175.32668 * 4 3 2 7 7 H 1.08997 * 109.47225 * 11.05759 * 6 4 3 8 8 C 1.53008 * 109.47254 * 251.06213 * 6 4 3 9 9 C 1.50696 * 109.47093 * 131.06313 * 6 4 3 10 10 H 1.08001 * 120.00042 * 5.08019 * 9 6 4 11 11 C 1.37876 * 120.00236 * 185.08135 * 9 6 4 12 12 N 1.31519 * 120.00343 * 197.67608 * 11 9 6 13 13 Si 1.86807 * 119.99864 * 17.67484 * 11 9 6 14 14 H 1.48492 * 109.46949 * 95.37204 * 13 11 9 15 15 H 1.48502 * 109.47207 * 215.37425 * 13 11 9 16 16 H 1.48501 * 109.46939 * 335.37410 * 13 11 9 17 17 C 1.39919 * 120.00012 * 95.10211 * 3 2 1 18 18 C 1.38896 * 120.07412 * 270.27454 * 17 3 2 19 19 C 1.38092 * 119.92584 * 180.31807 * 18 17 3 20 20 C 1.38300 * 120.07618 * 359.68229 * 19 18 17 21 21 C 1.38264 * 120.13755 * 0.02562 * 20 19 18 22 22 C 1.38133 * 120.07238 * 0.04285 * 21 20 19 23 23 C 1.50694 * 120.03647 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47076 * 299.99888 * 1 2 3 25 25 H 1.09003 * 109.46714 * 60.00247 * 1 2 3 26 26 H 1.08994 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47327 * 240.00110 * 2 1 3 28 28 H 1.09000 * 109.47252 * 120.00283 * 2 1 3 29 29 H 1.09000 * 109.47005 * 62.30835 * 8 6 4 30 30 H 1.08999 * 109.47258 * 182.31204 * 8 6 4 31 31 H 1.09011 * 109.46720 * 302.31100 * 8 6 4 32 32 H 0.96996 * 120.00116 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.03577 * 0.02562 * 18 17 3 34 34 H 1.08005 * 119.96152 * 179.70823 * 19 18 17 35 35 H 1.08001 * 119.93027 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.96237 * 180.02562 * 21 20 19 37 37 H 1.08994 * 109.47114 * 89.99386 * 23 22 21 38 38 H 1.08994 * 109.47177 * 209.99969 * 23 22 21 39 39 H 1.09008 * 109.47103 * 329.99683 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1451 2.0512 -1.1625 5 8 1.9363 1.4849 -2.2146 6 6 2.5463 3.5038 -1.1552 7 1 2.8782 3.7840 -0.1556 8 6 1.3471 4.3661 -1.5547 9 6 3.6693 3.7197 -2.1365 10 1 3.9990 2.9074 -2.7672 11 6 4.2760 4.9544 -2.2292 12 7 4.9946 5.2562 -3.2886 13 14 4.0774 6.1986 -0.8500 14 1 5.2355 6.1020 0.0743 15 1 4.0142 7.5671 -1.4232 16 1 2.8244 5.9156 -0.1049 17 6 2.3532 2.0048 1.2069 18 6 1.3897 2.7094 1.9171 19 6 1.7251 3.3293 3.1046 20 6 3.0171 3.2436 3.5904 21 6 3.9771 2.5379 2.8889 22 6 3.6484 1.9168 1.6996 23 6 4.6955 1.1484 0.9354 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5496 4.2411 -0.8222 30 1 1.6479 5.4132 -1.5893 31 1 0.9894 4.0581 -2.5373 32 1 5.4217 6.1246 -3.3537 33 1 0.3804 2.7763 1.5386 34 1 0.9774 3.8812 3.6549 35 1 3.2768 3.7290 4.5196 36 1 4.9851 2.4725 3.2710 37 1 4.6976 0.1098 1.2662 38 1 4.4711 1.1899 -0.1303 39 1 5.6754 1.5897 1.1178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596836145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:53 Heat of formation + Delta-G solvation = -31.497340 kcal Electronic energy + Delta-G solvation = -20639.683994 eV Core-core repulsion = 17739.382017 eV Total energy + Delta-G solvation = -2900.301977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68845 -39.64397 -36.66070 -35.77763 -33.64613 -33.42270 -32.09549 -30.17369 -27.72889 -27.25322 -25.57699 -23.75941 -23.07757 -22.34270 -20.15097 -18.98411 -18.27162 -17.48212 -16.89287 -16.63042 -16.27711 -15.42473 -15.21968 -15.02546 -14.77021 -14.55578 -14.37832 -14.15162 -13.99563 -13.82411 -13.34178 -13.21611 -12.99196 -12.90441 -12.83332 -12.65430 -12.28289 -12.24477 -12.06039 -11.88705 -11.60577 -11.42917 -10.73621 -10.61259 -9.85394 -9.68650 -9.43211 -8.35248 -6.35829 0.34379 0.48724 1.32732 1.35824 1.47396 1.74544 2.06855 2.32669 2.81516 2.97523 3.75764 3.97311 3.98943 4.17994 4.24213 4.28836 4.43987 4.44933 4.46674 4.61611 4.63113 4.71115 4.72930 4.74884 4.81471 4.87872 4.95326 5.04209 5.09868 5.22387 5.30267 5.39157 5.48843 5.54420 5.61231 5.64068 5.71366 6.02020 6.18558 6.55885 6.70150 7.21471 7.34754 8.82201 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.010012 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.525852 B = 2795.863243 C = 3559.612487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 N -0.574 5.574 4 C 0.539 3.461 5 O -0.580 6.580 6 C 0.007 3.993 7 H 0.056 0.944 8 C -0.128 4.128 9 C -0.520 4.520 10 H 0.018 0.982 11 C 0.025 3.975 12 N -0.936 5.936 13 Si 0.929 3.071 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.226 1.226 17 C 0.114 3.886 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.096 4.096 23 C -0.111 4.111 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.269 0.731 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 -5.146 19.546 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 N -0.304 5.304 4 C 0.331 3.669 5 O -0.459 6.459 6 C -0.015 4.015 7 H 0.074 0.926 8 C -0.186 4.186 9 C -0.558 4.558 10 H 0.036 0.964 11 C -0.173 4.173 12 N -0.574 5.574 13 Si 0.751 3.249 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.148 1.148 17 C 0.025 3.975 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.097 4.097 23 C -0.167 4.167 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.950 -5.361 18.858 20.800 hybrid contribution 0.439 0.424 -0.627 0.875 sum -6.511 -4.937 18.231 19.978 Atomic orbital electron populations 1.22057 0.94431 1.03343 1.01601 1.21574 0.95640 0.81146 1.02844 1.45566 1.65997 1.14389 1.04436 1.21212 0.73652 0.89790 0.82251 1.90539 1.52096 1.70780 1.32485 1.19120 0.95221 0.88850 0.98275 0.92588 1.21908 0.96987 0.99481 1.00265 1.20695 1.17600 0.97244 1.20266 0.96365 1.25797 0.94397 0.99628 0.97504 1.70141 1.35376 1.23313 1.28586 0.86062 0.80872 0.77740 0.80230 1.19272 1.20557 1.14833 1.17630 0.93486 0.99176 0.87250 1.21542 0.99229 0.97411 0.95897 1.21375 0.97706 0.99140 0.95296 1.21574 0.92769 0.97865 1.00695 1.21252 1.01089 0.97639 0.93787 1.20353 0.93797 0.99229 0.96360 1.20690 0.97375 1.00239 0.98444 0.91293 0.94764 0.89230 0.92191 0.88334 0.92069 0.92686 0.94505 0.92184 0.85332 0.82746 0.82583 0.83740 0.89534 0.94833 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.20 71.98 0.73 -3.20 16 2 C 0.11 3.26 6.11 86.38 0.53 3.79 16 3 N -0.57 -20.97 1.65 -631.24 -1.04 -22.01 16 4 C 0.54 25.51 5.74 87.66 0.50 26.01 16 5 O -0.58 -31.92 16.22 -3.05 -0.05 -31.97 16 6 C 0.01 0.35 1.89 -12.28 -0.02 0.32 16 7 H 0.06 2.62 4.76 -2.39 -0.01 2.61 16 8 C -0.13 -5.79 8.55 71.98 0.62 -5.17 16 9 C -0.52 -31.57 8.78 25.60 0.22 -31.35 16 10 H 0.02 1.28 7.78 -2.91 -0.02 1.26 16 11 C 0.03 1.51 5.32 84.65 0.45 1.96 16 12 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 13 Si 0.93 43.00 25.85 68.60 1.77 44.77 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.23 -9.33 5.63 99.48 0.56 -8.77 16 17 C 0.11 3.64 3.18 38.16 0.12 3.76 16 18 C -0.12 -3.21 9.91 22.39 0.22 -2.98 16 19 C -0.12 -2.41 10.04 22.25 0.22 -2.19 16 20 C -0.11 -2.20 10.04 22.29 0.22 -1.97 16 21 C -0.12 -2.83 9.70 22.25 0.22 -2.62 16 22 C -0.10 -2.89 5.78 -19.74 -0.11 -3.01 16 23 C -0.11 -3.45 9.77 71.23 0.70 -2.76 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 2.04 7.52 -2.38 -0.02 2.03 16 28 H 0.10 2.37 8.01 -2.39 -0.02 2.35 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.43 5.27 -2.39 -0.01 2.42 16 31 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.03 1.33 6.90 -2.39 -0.02 1.31 16 39 H 0.07 2.16 8.09 -2.38 -0.02 2.14 16 Total: -1.00 -76.75 320.22 6.48 -70.27 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.87 Total: 17.61 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 4.62 Total: -19.41 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -0.74 Total: -81.27 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.05 Total: -31.97 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.77 Total: 44.77 kcal Total: -76.75 6.48 -70.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596836145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.778 kcal (2) G-P(sol) polarization free energy of solvation -76.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds