Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46760 * 2 1 4 4 C 1.34775 * 119.99892 * 274.30454 * 3 2 1 5 5 O 1.21291 * 120.00232 * 4.04704 * 4 3 2 6 6 C 1.50700 * 119.99878 * 184.05443 * 4 3 2 7 7 H 1.08994 * 109.47052 * 331.59094 * 6 4 3 8 8 C 1.53004 * 109.47428 * 91.59485 * 6 4 3 9 9 C 1.50706 * 109.46953 * 211.59345 * 6 4 3 10 10 H 1.07995 * 119.99954 * 359.97438 * 9 6 4 11 11 C 1.37878 * 119.99933 * 179.97438 * 9 6 4 12 12 N 1.31513 * 120.00062 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 119.99862 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47229 * 89.99938 * 13 11 9 15 15 H 1.48500 * 109.47368 * 209.99983 * 13 11 9 16 16 H 1.48497 * 109.47326 * 330.00121 * 13 11 9 17 17 C 1.39923 * 119.99926 * 94.30758 * 3 2 1 18 18 C 1.38895 * 120.06872 * 263.34687 * 17 3 2 19 19 C 1.38096 * 119.92829 * 180.02562 * 18 17 3 20 20 C 1.38308 * 120.06955 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.14096 * 359.97438 * 20 19 18 22 22 C 1.38135 * 120.07386 * 359.71920 * 21 20 19 23 23 C 1.50696 * 120.04069 * 180.27422 * 22 21 20 24 24 H 1.08999 * 109.46937 * 184.82991 * 1 2 3 25 25 H 1.08997 * 109.47425 * 304.83418 * 1 2 3 26 26 H 1.09004 * 109.46984 * 64.83265 * 1 2 3 27 27 H 1.08992 * 109.47344 * 239.99757 * 2 1 3 28 28 H 1.09002 * 109.46498 * 119.99185 * 2 1 3 29 29 H 1.09007 * 109.46642 * 67.64543 * 8 6 4 30 30 H 1.08996 * 109.47119 * 187.64721 * 8 6 4 31 31 H 1.09000 * 109.46686 * 307.64944 * 8 6 4 32 32 H 0.96998 * 119.99846 * 180.02562 * 12 11 9 33 33 H 1.07992 * 120.03455 * 359.97438 * 18 17 3 34 34 H 1.07996 * 119.96236 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.92800 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.96368 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47222 * 274.99886 * 23 22 21 38 38 H 1.09004 * 109.46861 * 34.99766 * 23 22 21 39 39 H 1.08999 * 109.47312 * 154.99237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1602 2.0458 -1.1639 5 8 1.8150 1.5271 -2.2045 6 6 2.7482 3.4333 -1.1725 7 1 2.5363 3.9236 -0.2223 8 6 4.2623 3.3445 -1.3740 9 6 2.1377 4.2306 -2.2962 10 1 1.3984 3.7777 -2.9401 11 6 2.5232 5.5383 -2.5024 12 7 3.4239 6.0897 -1.7187 13 14 1.7671 6.5263 -3.8957 14 1 0.5509 7.2230 -3.4053 15 1 2.7494 7.5282 -4.3820 16 1 1.3998 5.6131 -5.0076 17 6 2.3372 2.0105 1.2084 18 6 1.4087 2.8358 1.8296 19 6 1.7267 3.4558 3.0218 20 6 2.9686 3.2562 3.5970 21 6 3.8951 2.4353 2.9811 22 6 3.5808 1.8072 1.7917 23 6 4.5890 0.9078 1.1242 24 1 -0.3633 -1.0240 0.0865 25 1 -0.3634 0.5870 0.8435 26 1 -0.3633 0.4370 -0.9301 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 4.4742 2.9798 -2.3792 30 1 4.7045 4.3324 -1.2451 31 1 4.6866 2.6580 -0.6414 32 1 3.6948 7.0097 -1.8635 33 1 0.4393 2.9930 1.3803 34 1 1.0053 4.0979 3.5051 35 1 3.2150 3.7425 4.5292 36 1 4.8641 2.2818 3.4326 37 1 5.2599 1.5075 0.5090 38 1 5.1662 0.3818 1.8846 39 1 4.0702 0.1835 0.4962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596836146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -15.403745 kcal Electronic energy + Delta-G solvation = -20501.467983 eV Core-core repulsion = 17601.863877 eV Total energy + Delta-G solvation = -2899.604106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15786 -38.08957 -35.08934 -33.73143 -32.44508 -31.37555 -30.06427 -28.81183 -26.56879 -25.09835 -23.78042 -22.51555 -21.53366 -20.97808 -18.74746 -16.68768 -16.31313 -15.59326 -15.47513 -15.34989 -14.53861 -14.03886 -13.76176 -13.52609 -13.31215 -13.00320 -12.89801 -12.43206 -12.27068 -12.16565 -11.87479 -11.68152 -11.35937 -11.12061 -10.94302 -10.90011 -10.72000 -10.61828 -10.55224 -10.19127 -9.99842 -8.97611 -8.83097 -8.50289 -8.38956 -8.29309 -7.98976 -5.99857 -4.03176 1.57140 1.67013 3.33771 3.39579 3.45387 3.60181 3.67127 3.99963 4.48076 5.10658 5.13303 5.19742 5.31663 5.33228 5.47742 5.51229 5.62378 5.70600 5.79707 5.85710 5.92815 5.96779 6.07951 6.18781 6.35806 6.39961 6.45966 6.66235 6.75740 6.80532 6.89425 6.96761 7.02724 7.08885 7.30496 7.54455 7.81146 7.99592 8.14519 8.42417 9.00513 9.18065 9.60696 11.07671 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.007847 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.432788 B = 3567.568916 C = 4141.287896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.529 3.471 5 O -0.539 6.539 6 C 0.034 3.966 7 H 0.049 0.951 8 C -0.128 4.128 9 C -0.501 4.501 10 H 0.065 0.935 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.154 3.846 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.082 4.082 23 C -0.117 4.117 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -8.461 11.517 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.007 4.007 3 N -0.322 5.322 4 C 0.322 3.678 5 O -0.414 6.414 6 C 0.013 3.987 7 H 0.067 0.933 8 C -0.186 4.186 9 C -0.540 4.540 10 H 0.084 0.916 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.064 3.936 18 C -0.126 4.126 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.083 4.083 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.165 -8.595 10.902 13.884 hybrid contribution -0.439 0.721 -0.653 1.067 sum -0.604 -7.875 10.249 12.939 Atomic orbital electron populations 1.22127 0.96327 1.01320 1.02692 1.21328 0.94332 0.82992 1.02029 1.45849 1.67702 1.13562 1.05051 1.22187 0.75584 0.88958 0.81039 1.90531 1.49499 1.69710 1.31672 1.18866 0.93808 0.86179 0.99832 0.93295 1.21753 0.96395 1.02292 0.98172 1.21035 1.23312 0.96051 1.13608 0.91633 1.24912 0.95101 0.97501 0.96445 1.69904 1.31111 1.13716 1.38315 0.86504 0.78839 0.79675 0.82532 1.20708 1.21202 1.19756 1.17315 0.92688 0.96326 0.87299 1.21405 0.99474 0.96626 0.95086 1.20962 0.97098 0.99801 0.95734 1.21068 0.93916 0.98714 1.00012 1.20836 0.99297 0.97990 0.95268 1.20092 0.94235 0.98660 0.95334 1.20867 0.97687 0.98557 1.00224 0.92293 0.92744 0.91848 0.90435 0.91358 0.94750 0.89402 0.96422 0.93004 0.85918 0.86081 0.86278 0.86133 0.90258 0.91950 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.21 37.16 0.38 -2.03 16 2 C 0.12 1.81 5.08 -4.04 -0.02 1.79 16 3 N -0.59 -11.14 1.67 -113.45 -0.19 -11.33 16 4 C 0.53 12.54 6.63 -10.99 -0.07 12.47 16 5 O -0.54 -14.24 15.70 5.55 0.09 -14.15 16 6 C 0.03 0.88 2.13 -92.92 -0.20 0.69 16 7 H 0.05 1.31 6.30 -51.93 -0.33 0.99 16 8 C -0.13 -3.15 8.85 37.16 0.33 -2.82 16 9 C -0.50 -14.52 8.31 -34.44 -0.29 -14.80 16 10 H 0.07 1.99 7.17 -52.49 -0.38 1.61 16 11 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 12 N -0.89 -25.47 11.41 55.43 0.63 -24.83 16 13 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.15 2.70 3.60 -83.69 -0.30 2.40 16 18 C -0.11 -1.78 9.23 -39.39 -0.36 -2.14 16 19 C -0.12 -1.68 10.04 -39.61 -0.40 -2.08 16 20 C -0.12 -1.58 10.04 -39.55 -0.40 -1.97 16 21 C -0.12 -1.59 9.72 -39.61 -0.38 -1.97 16 22 C -0.08 -1.28 5.72 -104.43 -0.60 -1.88 16 23 C -0.12 -1.65 9.29 36.00 0.33 -1.31 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.28 7.62 -51.93 -0.40 0.88 16 28 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 29 H 0.03 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.09 2.32 6.32 -51.93 -0.33 1.99 16 31 H 0.02 0.37 5.03 -51.93 -0.26 0.11 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.08 1.21 5.99 -51.93 -0.31 0.89 16 38 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.06 0.96 6.38 -51.93 -0.33 0.62 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -31.61 317.73 -7.45 -39.07 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.68 Total: 1.44 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.07 Total: -12.02 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.44 Total: -36.17 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.09 Total: -14.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.61 -7.45 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596836146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.664 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds