Wall clock time and date at job start Mon Mar 30 2020 06:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46760 * 2 1 4 4 C 1.34775 * 119.99892 * 274.30454 * 3 2 1 5 5 O 1.21291 * 120.00232 * 4.04704 * 4 3 2 6 6 C 1.50700 * 119.99878 * 184.05443 * 4 3 2 7 7 H 1.08994 * 109.47052 * 331.59094 * 6 4 3 8 8 C 1.53004 * 109.47428 * 91.59485 * 6 4 3 9 9 C 1.50706 * 109.46953 * 211.59345 * 6 4 3 10 10 H 1.07995 * 119.99954 * 359.97438 * 9 6 4 11 11 C 1.37878 * 119.99933 * 179.97438 * 9 6 4 12 12 N 1.31513 * 120.00062 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 119.99862 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47229 * 89.99938 * 13 11 9 15 15 H 1.48500 * 109.47368 * 209.99983 * 13 11 9 16 16 H 1.48497 * 109.47326 * 330.00121 * 13 11 9 17 17 C 1.39923 * 119.99926 * 94.30758 * 3 2 1 18 18 C 1.38895 * 120.06872 * 263.34687 * 17 3 2 19 19 C 1.38096 * 119.92829 * 180.02562 * 18 17 3 20 20 C 1.38308 * 120.06955 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.14096 * 359.97438 * 20 19 18 22 22 C 1.38135 * 120.07386 * 359.71920 * 21 20 19 23 23 C 1.50696 * 120.04069 * 180.27422 * 22 21 20 24 24 H 1.08999 * 109.46937 * 184.82991 * 1 2 3 25 25 H 1.08997 * 109.47425 * 304.83418 * 1 2 3 26 26 H 1.09004 * 109.46984 * 64.83265 * 1 2 3 27 27 H 1.08992 * 109.47344 * 239.99757 * 2 1 3 28 28 H 1.09002 * 109.46498 * 119.99185 * 2 1 3 29 29 H 1.09007 * 109.46642 * 67.64543 * 8 6 4 30 30 H 1.08996 * 109.47119 * 187.64721 * 8 6 4 31 31 H 1.09000 * 109.46686 * 307.64944 * 8 6 4 32 32 H 0.96998 * 119.99846 * 180.02562 * 12 11 9 33 33 H 1.07992 * 120.03455 * 359.97438 * 18 17 3 34 34 H 1.07996 * 119.96236 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.92800 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.96368 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47222 * 274.99886 * 23 22 21 38 38 H 1.09004 * 109.46861 * 34.99766 * 23 22 21 39 39 H 1.08999 * 109.47312 * 154.99237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1602 2.0458 -1.1639 5 8 1.8150 1.5271 -2.2045 6 6 2.7482 3.4333 -1.1725 7 1 2.5363 3.9236 -0.2223 8 6 4.2623 3.3445 -1.3740 9 6 2.1377 4.2306 -2.2962 10 1 1.3984 3.7777 -2.9401 11 6 2.5232 5.5383 -2.5024 12 7 3.4239 6.0897 -1.7187 13 14 1.7671 6.5263 -3.8957 14 1 0.5509 7.2230 -3.4053 15 1 2.7494 7.5282 -4.3820 16 1 1.3998 5.6131 -5.0076 17 6 2.3372 2.0105 1.2084 18 6 1.4087 2.8358 1.8296 19 6 1.7267 3.4558 3.0218 20 6 2.9686 3.2562 3.5970 21 6 3.8951 2.4353 2.9811 22 6 3.5808 1.8072 1.7917 23 6 4.5890 0.9078 1.1242 24 1 -0.3633 -1.0240 0.0865 25 1 -0.3634 0.5870 0.8435 26 1 -0.3633 0.4370 -0.9301 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 4.4742 2.9798 -2.3792 30 1 4.7045 4.3324 -1.2451 31 1 4.6866 2.6580 -0.6414 32 1 3.6948 7.0097 -1.8635 33 1 0.4393 2.9930 1.3803 34 1 1.0053 4.0979 3.5051 35 1 3.2150 3.7425 4.5292 36 1 4.8641 2.2818 3.4326 37 1 5.2599 1.5075 0.5090 38 1 5.1662 0.3818 1.8846 39 1 4.0702 0.1835 0.4962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596836146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:55 Heat of formation + Delta-G solvation = -32.292674 kcal Electronic energy + Delta-G solvation = -20502.200342 eV Core-core repulsion = 17601.863877 eV Total energy + Delta-G solvation = -2900.336465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63069 -39.57505 -36.62191 -35.79065 -33.62441 -32.96134 -31.80471 -30.12324 -27.78533 -27.18688 -25.44146 -23.75042 -23.07763 -22.34564 -20.23446 -18.50719 -18.17725 -17.23486 -16.77351 -16.73878 -16.36553 -15.37212 -15.28104 -15.02015 -14.82952 -14.52651 -14.24188 -14.00284 -13.75063 -13.38124 -13.27544 -13.12299 -12.95618 -12.82532 -12.67268 -12.44724 -12.28163 -12.24995 -12.05208 -12.03560 -11.89931 -11.04538 -10.66116 -10.48441 -9.87515 -9.61750 -9.35790 -8.17000 -6.28103 0.38857 0.51766 1.37032 1.38189 1.49793 1.81340 2.11430 2.42964 2.84749 3.12076 3.85666 4.00235 4.02167 4.23916 4.25439 4.28988 4.43173 4.48895 4.62799 4.68220 4.69038 4.76930 4.83841 4.88736 4.92972 4.97885 5.02166 5.13954 5.22552 5.35950 5.43765 5.51596 5.63908 5.64605 5.71456 5.73585 5.88321 6.05861 6.17000 6.64563 6.77749 7.33510 7.43908 8.89179 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.007847 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.432788 B = 3567.568916 C = 4141.287896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.110 3.890 3 N -0.575 5.575 4 C 0.529 3.471 5 O -0.579 6.579 6 C 0.036 3.964 7 H 0.037 0.963 8 C -0.115 4.115 9 C -0.531 4.531 10 H 0.040 0.960 11 C 0.024 3.976 12 N -0.906 5.906 13 Si 0.954 3.046 14 H -0.271 1.271 15 H -0.272 1.272 16 H -0.280 1.280 17 C 0.121 3.879 18 C -0.128 4.128 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.092 4.092 23 C -0.115 4.115 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.016 0.984 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -8.528 13.770 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.011 4.011 3 N -0.305 5.305 4 C 0.321 3.679 5 O -0.458 6.458 6 C 0.014 3.986 7 H 0.055 0.945 8 C -0.173 4.173 9 C -0.570 4.570 10 H 0.058 0.942 11 C -0.176 4.176 12 N -0.545 5.545 13 Si 0.779 3.221 14 H -0.196 1.196 15 H -0.197 1.197 16 H -0.205 1.205 17 C 0.031 3.969 18 C -0.147 4.147 19 C -0.139 4.139 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.094 4.094 23 C -0.171 4.171 24 H 0.111 0.889 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.035 0.965 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.524 -8.672 13.213 15.813 hybrid contribution -0.641 0.737 -1.217 1.560 sum -0.117 -7.935 11.996 14.384 Atomic orbital electron populations 1.22061 0.95380 1.03229 1.01029 1.21586 0.95145 0.81272 1.03065 1.45614 1.66139 1.14384 1.04349 1.21718 0.75646 0.88530 0.81992 1.90497 1.51506 1.70418 1.33422 1.18706 0.94385 0.87424 0.98048 0.94483 1.21574 0.95856 1.01813 0.98045 1.21175 1.23821 0.97251 1.14738 0.94193 1.25576 0.95404 0.98099 0.98552 1.69978 1.31304 1.14108 1.39095 0.85619 0.78648 0.78277 0.79519 1.19631 1.19729 1.20523 1.17584 0.94262 0.97978 0.87072 1.21453 0.99139 0.97650 0.96507 1.21280 0.98356 0.99442 0.94841 1.21523 0.92918 0.97695 1.00852 1.21255 1.00688 0.96931 0.94311 1.20313 0.93578 0.99263 0.96223 1.20871 0.97312 0.98122 1.00838 0.88888 0.92391 0.95102 0.91482 0.88041 0.96455 0.91235 0.93357 0.92534 0.87391 0.83904 0.82735 0.82950 0.91662 0.88516 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 10.21 71.98 0.74 -3.83 16 2 C 0.11 3.42 5.08 86.38 0.44 3.86 16 3 N -0.57 -22.04 1.67 -631.24 -1.06 -23.09 16 4 C 0.53 26.01 6.63 87.66 0.58 26.59 16 5 O -0.58 -32.13 15.70 -3.06 -0.05 -32.18 16 6 C 0.04 1.90 2.13 -12.28 -0.03 1.87 16 7 H 0.04 2.05 6.30 -2.39 -0.02 2.04 16 8 C -0.11 -5.78 8.85 71.98 0.64 -5.14 16 9 C -0.53 -31.92 8.31 25.60 0.21 -31.71 16 10 H 0.04 2.55 7.17 -2.91 -0.02 2.53 16 11 C 0.02 1.35 5.30 84.66 0.45 1.80 16 12 N -0.91 -52.08 11.41 21.45 0.24 -51.84 16 13 Si 0.95 45.75 29.54 68.60 2.03 47.77 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 17 C 0.12 4.17 3.60 38.15 0.14 4.31 16 18 C -0.13 -4.24 9.23 22.39 0.21 -4.04 16 19 C -0.12 -3.21 10.04 22.25 0.22 -2.99 16 20 C -0.11 -2.56 10.04 22.29 0.22 -2.33 16 21 C -0.11 -2.72 9.72 22.25 0.22 -2.50 16 22 C -0.09 -2.70 5.72 -19.74 -0.11 -2.82 16 23 C -0.12 -3.00 9.29 71.23 0.66 -2.34 16 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 2.23 7.62 -2.39 -0.02 2.21 16 28 H 0.10 2.48 7.91 -2.39 -0.02 2.46 16 29 H 0.02 0.87 8.13 -2.38 -0.02 0.85 16 30 H 0.07 3.73 6.32 -2.39 -0.02 3.71 16 31 H 0.05 2.07 5.03 -2.39 -0.01 2.06 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.06 1.88 5.99 -2.39 -0.01 1.87 16 38 H 0.10 1.82 8.12 -2.38 -0.02 1.80 16 39 H 0.06 1.56 6.38 -2.39 -0.02 1.54 16 Total: -1.00 -70.71 317.73 6.78 -63.93 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.03 Total: 14.68 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.58 Total: -19.27 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -0.81 Total: -74.93 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.71 6.78 -63.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596836146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.633 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds