Wall clock time and date at job start Mon Mar 30 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47504 * 2 1 4 4 C 1.50704 * 109.47453 * 239.99605 * 2 1 3 5 5 H 1.07998 * 120.00444 * 239.99772 * 4 2 1 6 6 C 1.37883 * 119.99216 * 60.00601 * 4 2 1 7 7 N 1.31511 * 120.00563 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99350 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46603 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47107 * 299.99476 * 8 6 4 11 11 H 1.48494 * 109.47145 * 59.99538 * 8 6 4 12 12 C 1.50703 * 109.47130 * 120.00102 * 2 1 3 13 13 O 1.21281 * 120.00350 * 120.00278 * 12 2 1 14 14 N 1.34779 * 119.99519 * 300.00091 * 12 2 1 15 15 C 1.46503 * 119.99531 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47103 * 298.88987 * 15 14 12 17 17 C 1.53000 * 109.47213 * 58.89260 * 15 14 12 18 18 C 1.50701 * 109.46908 * 178.89187 * 15 14 12 19 19 C 1.38237 * 120.00061 * 335.09185 * 18 15 14 20 20 C 1.38240 * 119.99527 * 179.76518 * 19 18 15 21 21 C 1.38231 * 120.00385 * 0.50723 * 20 19 18 22 22 C 1.38239 * 119.99809 * 359.74576 * 21 20 19 23 23 C 1.38230 * 120.00216 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46936 * 60.00086 * 1 2 3 25 25 H 1.09004 * 109.47504 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47629 * 300.00068 * 1 2 3 27 27 H 0.96999 * 120.00102 * 180.02562 * 7 6 4 28 28 H 0.96993 * 120.00708 * 0.02562 * 14 12 2 29 29 H 1.09005 * 109.46777 * 60.00717 * 16 15 14 30 30 H 1.09001 * 109.47043 * 180.02562 * 16 15 14 31 31 H 1.08993 * 109.47113 * 300.00068 * 16 15 14 32 32 H 1.08998 * 109.46832 * 60.00227 * 17 15 14 33 33 H 1.09001 * 109.47036 * 179.97438 * 17 15 14 34 34 H 1.08997 * 109.47003 * 299.99779 * 17 15 14 35 35 H 1.07995 * 120.00018 * 359.97438 * 19 18 15 36 36 H 1.08003 * 119.99642 * 180.22679 * 20 19 18 37 37 H 1.07997 * 120.00384 * 179.72617 * 21 20 19 38 38 H 1.08000 * 119.99701 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00425 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8261 -0.4205 -5.2204 10 1 3.8064 -1.1210 -4.0081 11 1 1.8259 -2.5202 -4.0076 12 6 2.0322 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1945 -0.9409 3.6507 16 6 1.6612 -2.3749 3.6645 17 6 3.7242 -0.9657 3.6371 18 6 1.7147 -0.2147 4.8810 19 6 1.4053 1.1308 4.8128 20 6 0.9606 1.7957 5.9403 21 6 0.8354 1.1176 7.1383 22 6 1.1498 -0.2268 7.2077 23 6 1.5890 -0.8931 6.0790 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7083 1.1609 -3.4844 28 1 1.1486 0.5385 2.5436 29 1 2.0083 -2.9001 2.7746 30 1 2.0238 -2.8888 4.5547 31 1 0.5714 -2.3572 3.6742 32 1 4.1040 0.0559 3.6274 33 1 4.0872 -1.4794 4.5274 34 1 4.0711 -1.4909 2.7473 35 1 1.5078 1.6618 3.8780 36 1 0.7154 2.8462 5.8862 37 1 0.4922 1.6381 8.0202 38 1 1.0524 -0.7565 8.1439 39 1 1.8350 -1.9432 6.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596949766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:01 Heat of formation + Delta-G solvation = -18.671476 kcal Electronic energy + Delta-G solvation = -19774.164475 eV Core-core repulsion = 16874.418670 eV Total energy + Delta-G solvation = -2899.745806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16149 -38.51026 -35.56035 -33.69286 -31.92905 -30.90404 -30.13188 -29.21959 -26.99718 -25.10635 -23.75368 -22.60634 -22.15770 -20.00287 -18.87769 -17.44949 -16.16925 -15.89645 -15.36970 -14.91793 -14.51027 -14.37199 -14.08686 -13.60469 -13.38326 -13.28725 -13.06682 -12.56590 -12.32820 -12.02301 -11.88114 -11.56951 -11.44462 -11.07051 -10.96615 -10.93513 -10.70751 -10.67142 -10.51556 -10.19380 -9.92307 -8.97602 -8.95900 -8.86808 -8.47959 -8.34093 -8.22311 -6.00209 -4.03146 1.29774 1.34411 3.37967 3.40363 3.45693 3.69265 3.79804 3.92941 4.49677 4.62269 4.84174 4.92461 5.06281 5.28398 5.32944 5.40296 5.43688 5.53948 5.79311 5.87338 5.95417 5.97583 6.09688 6.20411 6.28833 6.40118 6.45118 6.49994 6.61737 6.65186 6.68370 6.86215 6.93447 6.97569 7.21797 7.51186 7.78806 8.02846 8.19635 8.50164 9.05525 9.30656 9.62308 11.07377 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.004761 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.177769 B = 5880.180543 C = 6314.276077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.541 6.541 14 N -0.740 5.740 15 C 0.212 3.788 16 C -0.160 4.160 17 C -0.156 4.156 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.113 4.113 24 H 0.092 0.908 25 H 0.031 0.969 26 H 0.011 0.989 27 H 0.261 0.739 28 H 0.394 0.606 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 0.956 17.905 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.314 3.686 13 O -0.417 6.417 14 N -0.396 5.396 15 C 0.126 3.874 16 C -0.217 4.217 17 C -0.214 4.214 18 C -0.074 4.074 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.131 4.131 24 H 0.111 0.889 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.475 0.344 17.651 17.661 hybrid contribution -0.077 0.096 -0.679 0.690 sum -0.551 0.440 16.972 16.987 Atomic orbital electron populations 1.21735 0.96646 0.99784 1.00824 1.18869 0.94068 0.96798 0.89500 0.93182 1.21103 1.30904 1.12763 0.88975 0.90802 1.24950 0.95158 0.95073 0.99086 1.69861 1.37126 1.23142 1.23564 0.86519 0.79252 0.79712 0.81708 1.21437 1.20228 1.20243 1.21879 0.78272 0.84219 0.84261 1.90455 1.37853 1.26751 1.86649 1.46573 1.55310 1.32559 1.05163 1.19002 0.94174 0.91787 0.82459 1.22256 1.00864 0.95419 1.03210 1.22205 0.93596 1.02265 1.03382 1.20035 0.98367 0.94083 0.94933 1.21057 0.99472 0.94128 0.98892 1.21137 0.99492 0.99916 0.92837 1.21128 1.00898 0.94782 0.97803 1.21114 0.99674 0.94756 0.98218 1.21047 0.99821 1.00085 0.92132 0.88908 0.95026 0.97041 0.92967 0.77018 0.89723 0.92409 0.92745 0.92868 0.92601 0.89384 0.85698 0.86018 0.86324 0.86182 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.15 0.33 -2.72 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.50 -14.10 8.37 -34.44 -0.29 -14.39 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.25 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.70 6.57 -10.98 -0.07 11.63 16 13 O -0.54 -13.40 11.67 5.56 0.06 -13.33 16 14 N -0.74 -13.07 4.77 -48.68 -0.23 -13.30 16 15 C 0.21 3.27 0.89 -132.97 -0.12 3.16 16 16 C -0.16 -2.45 7.86 37.16 0.29 -2.15 16 17 C -0.16 -2.44 8.37 37.16 0.31 -2.13 16 18 C -0.07 -0.97 4.80 -104.62 -0.50 -1.48 16 19 C -0.12 -1.46 9.02 -39.58 -0.36 -1.82 16 20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 21 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.11 -1.30 9.15 -39.58 -0.36 -1.66 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.39 6.28 5.83 -40.82 -0.24 6.04 16 29 H 0.08 1.55 6.25 -51.93 -0.32 1.23 16 30 H 0.06 0.72 6.52 -51.93 -0.34 0.38 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.63 6.09 -51.93 -0.32 1.31 16 35 H 0.13 1.52 6.43 -52.49 -0.34 1.18 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.28 6.33 -52.49 -0.33 0.95 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -30.29 311.61 -7.63 -37.92 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.47 Total: 6.28 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.30 Total: -14.50 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.40 Total: -37.93 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.06 Total: -13.33 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.29 -7.63 -37.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596949766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.251 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds