Wall clock time and date at job start Mon Mar 30 2020 06:25:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 H 1.09004 * 109.47504 * 2 1
4 4 C 1.50704 * 109.47453 * 239.99605 * 2 1 3
5 5 H 1.07998 * 120.00444 * 239.99772 * 4 2 1
6 6 C 1.37883 * 119.99216 * 60.00601 * 4 2 1
7 7 N 1.31511 * 120.00563 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99350 * 180.02562 * 6 4 2
9 9 H 1.48502 * 109.46603 * 179.97438 * 8 6 4
10 10 H 1.48498 * 109.47107 * 299.99476 * 8 6 4
11 11 H 1.48494 * 109.47145 * 59.99538 * 8 6 4
12 12 C 1.50703 * 109.47130 * 120.00102 * 2 1 3
13 13 O 1.21281 * 120.00350 * 120.00278 * 12 2 1
14 14 N 1.34779 * 119.99519 * 300.00091 * 12 2 1
15 15 C 1.46503 * 119.99531 * 179.97438 * 14 12 2
16 16 C 1.53002 * 109.47103 * 298.88987 * 15 14 12
17 17 C 1.53000 * 109.47213 * 58.89260 * 15 14 12
18 18 C 1.50701 * 109.46908 * 178.89187 * 15 14 12
19 19 C 1.38237 * 120.00061 * 335.09185 * 18 15 14
20 20 C 1.38240 * 119.99527 * 179.76518 * 19 18 15
21 21 C 1.38231 * 120.00385 * 0.50723 * 20 19 18
22 22 C 1.38239 * 119.99809 * 359.74576 * 21 20 19
23 23 C 1.38230 * 120.00216 * 359.97438 * 22 21 20
24 24 H 1.09001 * 109.46936 * 60.00086 * 1 2 3
25 25 H 1.09004 * 109.47504 * 179.97438 * 1 2 3
26 26 H 1.08995 * 109.47629 * 300.00068 * 1 2 3
27 27 H 0.96999 * 120.00102 * 180.02562 * 7 6 4
28 28 H 0.96993 * 120.00708 * 0.02562 * 14 12 2
29 29 H 1.09005 * 109.46777 * 60.00717 * 16 15 14
30 30 H 1.09001 * 109.47043 * 180.02562 * 16 15 14
31 31 H 1.08993 * 109.47113 * 300.00068 * 16 15 14
32 32 H 1.08998 * 109.46832 * 60.00227 * 17 15 14
33 33 H 1.09001 * 109.47036 * 179.97438 * 17 15 14
34 34 H 1.08997 * 109.47003 * 299.99779 * 17 15 14
35 35 H 1.07995 * 120.00018 * 359.97438 * 19 18 15
36 36 H 1.08003 * 119.99642 * 180.22679 * 20 19 18
37 37 H 1.07997 * 120.00384 * 179.72617 * 21 20 19
38 38 H 1.08000 * 119.99701 * 179.97438 * 22 21 20
39 39 H 1.07998 * 120.00425 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2393 -2.4827
7 7 0.9429 0.8297 -2.6034
8 14 2.3215 -1.1204 -4.0079
9 1 1.8261 -0.4205 -5.2204
10 1 3.8064 -1.1210 -4.0081
11 1 1.8259 -2.5202 -4.0076
12 6 2.0322 -0.7104 1.2305
13 8 2.7296 -1.6965 1.1193
14 7 1.7066 -0.2499 2.4546
15 6 2.1945 -0.9409 3.6507
16 6 1.6612 -2.3749 3.6645
17 6 3.7242 -0.9657 3.6371
18 6 1.7147 -0.2147 4.8810
19 6 1.4053 1.1308 4.8128
20 6 0.9606 1.7957 5.9403
21 6 0.8354 1.1176 7.1383
22 6 1.1498 -0.2268 7.2077
23 6 1.5890 -0.8931 6.0790
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 0.7083 1.1609 -3.4844
28 1 1.1486 0.5385 2.5436
29 1 2.0083 -2.9001 2.7746
30 1 2.0238 -2.8888 4.5547
31 1 0.5714 -2.3572 3.6742
32 1 4.1040 0.0559 3.6274
33 1 4.0872 -1.4794 4.5274
34 1 4.0711 -1.4909 2.7473
35 1 1.5078 1.6618 3.8780
36 1 0.7154 2.8462 5.8862
37 1 0.4922 1.6381 8.0202
38 1 1.0524 -0.7565 8.1439
39 1 1.8350 -1.9432 6.1333
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000596949766.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:25:01
Heat of formation + Delta-G solvation = -18.671476 kcal
Electronic energy + Delta-G solvation = -19774.164475 eV
Core-core repulsion = 16874.418670 eV
Total energy + Delta-G solvation = -2899.745806 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.16149 -38.51026 -35.56035 -33.69286 -31.92905 -30.90404 -30.13188 -29.21959
-26.99718 -25.10635 -23.75368 -22.60634 -22.15770 -20.00287 -18.87769 -17.44949
-16.16925 -15.89645 -15.36970 -14.91793 -14.51027 -14.37199 -14.08686 -13.60469
-13.38326 -13.28725 -13.06682 -12.56590 -12.32820 -12.02301 -11.88114 -11.56951
-11.44462 -11.07051 -10.96615 -10.93513 -10.70751 -10.67142 -10.51556 -10.19380
-9.92307 -8.97602 -8.95900 -8.86808 -8.47959 -8.34093 -8.22311 -6.00209
-4.03146 1.29774 1.34411 3.37967 3.40363 3.45693 3.69265 3.79804
3.92941 4.49677 4.62269 4.84174 4.92461 5.06281 5.28398 5.32944
5.40296 5.43688 5.53948 5.79311 5.87338 5.95417 5.97583 6.09688
6.20411 6.28833 6.40118 6.45118 6.49994 6.61737 6.65186 6.68370
6.86215 6.93447 6.97569 7.21797 7.51186 7.78806 8.02846 8.19635
8.50164 9.05525 9.30656 9.62308 11.07377
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.036873 B = 0.004761 C = 0.004433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 759.177769 B = 5880.180543 C = 6314.276077
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.029 3.971
3 H 0.050 0.950
4 C -0.499 4.499
5 H 0.074 0.926
6 C 0.058 3.942
7 N -0.897 5.897
8 Si 0.900 3.100
9 H -0.289 1.289
10 H -0.277 1.277
11 H -0.277 1.277
12 C 0.524 3.476
13 O -0.541 6.541
14 N -0.740 5.740
15 C 0.212 3.788
16 C -0.160 4.160
17 C -0.156 4.156
18 C -0.074 4.074
19 C -0.117 4.117
20 C -0.116 4.116
21 C -0.128 4.128
22 C -0.120 4.120
23 C -0.113 4.113
24 H 0.092 0.908
25 H 0.031 0.969
26 H 0.011 0.989
27 H 0.261 0.739
28 H 0.394 0.606
29 H 0.084 0.916
30 H 0.057 0.943
31 H 0.053 0.947
32 H 0.052 0.948
33 H 0.055 0.945
34 H 0.087 0.913
35 H 0.125 0.875
36 H 0.122 0.878
37 H 0.119 0.881
38 H 0.120 0.880
39 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.910 0.956 17.905 17.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.008 3.992
3 H 0.068 0.932
4 C -0.537 4.537
5 H 0.092 0.908
6 C -0.143 4.143
7 N -0.537 5.537
8 Si 0.728 3.272
9 H -0.214 1.214
10 H -0.202 1.202
11 H -0.202 1.202
12 C 0.314 3.686
13 O -0.417 6.417
14 N -0.396 5.396
15 C 0.126 3.874
16 C -0.217 4.217
17 C -0.214 4.214
18 C -0.074 4.074
19 C -0.135 4.135
20 C -0.134 4.134
21 C -0.146 4.146
22 C -0.138 4.138
23 C -0.131 4.131
24 H 0.111 0.889
25 H 0.050 0.950
26 H 0.030 0.970
27 H 0.070 0.930
28 H 0.230 0.770
29 H 0.103 0.897
30 H 0.076 0.924
31 H 0.073 0.927
32 H 0.071 0.929
33 H 0.074 0.926
34 H 0.106 0.894
35 H 0.143 0.857
36 H 0.140 0.860
37 H 0.137 0.863
38 H 0.138 0.862
39 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -0.475 0.344 17.651 17.661
hybrid contribution -0.077 0.096 -0.679 0.690
sum -0.551 0.440 16.972 16.987
Atomic orbital electron populations
1.21735 0.96646 0.99784 1.00824 1.18869 0.94068 0.96798 0.89500
0.93182 1.21103 1.30904 1.12763 0.88975 0.90802 1.24950 0.95158
0.95073 0.99086 1.69861 1.37126 1.23142 1.23564 0.86519 0.79252
0.79712 0.81708 1.21437 1.20228 1.20243 1.21879 0.78272 0.84219
0.84261 1.90455 1.37853 1.26751 1.86649 1.46573 1.55310 1.32559
1.05163 1.19002 0.94174 0.91787 0.82459 1.22256 1.00864 0.95419
1.03210 1.22205 0.93596 1.02265 1.03382 1.20035 0.98367 0.94083
0.94933 1.21057 0.99472 0.94128 0.98892 1.21137 0.99492 0.99916
0.92837 1.21128 1.00898 0.94782 0.97803 1.21114 0.99674 0.94756
0.98218 1.21047 0.99821 1.00085 0.92132 0.88908 0.95026 0.97041
0.92967 0.77018 0.89723 0.92409 0.92745 0.92868 0.92601 0.89384
0.85698 0.86018 0.86324 0.86182 0.85706
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.05 8.87 37.15 0.33 -2.72 16
2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16
3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16
4 C -0.50 -14.10 8.37 -34.44 -0.29 -14.39 16
5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16
6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16
7 N -0.90 -25.25 11.32 55.43 0.63 -24.63 16
8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16
9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
12 C 0.52 11.70 6.57 -10.98 -0.07 11.63 16
13 O -0.54 -13.40 11.67 5.56 0.06 -13.33 16
14 N -0.74 -13.07 4.77 -48.68 -0.23 -13.30 16
15 C 0.21 3.27 0.89 -132.97 -0.12 3.16 16
16 C -0.16 -2.45 7.86 37.16 0.29 -2.15 16
17 C -0.16 -2.44 8.37 37.16 0.31 -2.13 16
18 C -0.07 -0.97 4.80 -104.62 -0.50 -1.48 16
19 C -0.12 -1.46 9.02 -39.58 -0.36 -1.82 16
20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16
21 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16
22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16
23 C -0.11 -1.30 9.15 -39.58 -0.36 -1.66 16
24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16
25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16
27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
28 H 0.39 6.28 5.83 -40.82 -0.24 6.04 16
29 H 0.08 1.55 6.25 -51.93 -0.32 1.23 16
30 H 0.06 0.72 6.52 -51.93 -0.34 0.38 16
31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.09 1.63 6.09 -51.93 -0.32 1.31 16
35 H 0.13 1.52 6.43 -52.49 -0.34 1.18 16
36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16
37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16
38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16
39 H 0.13 1.28 6.33 -52.49 -0.33 0.95 16
LS Contribution 311.61 15.07 4.70 4.70
Total: -1.00 -30.29 311.61 -7.63 -37.92
By element:
Atomic # 1 Polarization: 11.74 SS G_CDS: -5.47 Total: 6.28 kcal
Atomic # 6 Polarization: -12.20 SS G_CDS: -2.30 Total: -14.50 kcal
Atomic # 7 Polarization: -38.32 SS G_CDS: 0.40 Total: -37.93 kcal
Atomic # 8 Polarization: -13.40 SS G_CDS: 0.06 Total: -13.33 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -30.29 -7.63 -37.92 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596949766.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.251 kcal
(2) G-P(sol) polarization free energy of solvation -30.290 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds