Wall clock time and date at job start Mon Mar 30 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47504 * 2 1 4 4 C 1.50704 * 109.47453 * 239.99605 * 2 1 3 5 5 H 1.07998 * 120.00444 * 239.99772 * 4 2 1 6 6 C 1.37883 * 119.99216 * 60.00601 * 4 2 1 7 7 N 1.31511 * 120.00563 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99350 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46603 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47107 * 299.99476 * 8 6 4 11 11 H 1.48494 * 109.47145 * 59.99538 * 8 6 4 12 12 C 1.50703 * 109.47130 * 120.00102 * 2 1 3 13 13 O 1.21281 * 120.00350 * 120.00278 * 12 2 1 14 14 N 1.34779 * 119.99519 * 300.00091 * 12 2 1 15 15 C 1.46503 * 119.99531 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47103 * 298.88987 * 15 14 12 17 17 C 1.53000 * 109.47213 * 58.89260 * 15 14 12 18 18 C 1.50701 * 109.46908 * 178.89187 * 15 14 12 19 19 C 1.38237 * 120.00061 * 335.09185 * 18 15 14 20 20 C 1.38240 * 119.99527 * 179.76518 * 19 18 15 21 21 C 1.38231 * 120.00385 * 0.50723 * 20 19 18 22 22 C 1.38239 * 119.99809 * 359.74576 * 21 20 19 23 23 C 1.38230 * 120.00216 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46936 * 60.00086 * 1 2 3 25 25 H 1.09004 * 109.47504 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47629 * 300.00068 * 1 2 3 27 27 H 0.96999 * 120.00102 * 180.02562 * 7 6 4 28 28 H 0.96993 * 120.00708 * 0.02562 * 14 12 2 29 29 H 1.09005 * 109.46777 * 60.00717 * 16 15 14 30 30 H 1.09001 * 109.47043 * 180.02562 * 16 15 14 31 31 H 1.08993 * 109.47113 * 300.00068 * 16 15 14 32 32 H 1.08998 * 109.46832 * 60.00227 * 17 15 14 33 33 H 1.09001 * 109.47036 * 179.97438 * 17 15 14 34 34 H 1.08997 * 109.47003 * 299.99779 * 17 15 14 35 35 H 1.07995 * 120.00018 * 359.97438 * 19 18 15 36 36 H 1.08003 * 119.99642 * 180.22679 * 20 19 18 37 37 H 1.07997 * 120.00384 * 179.72617 * 21 20 19 38 38 H 1.08000 * 119.99701 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00425 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8261 -0.4205 -5.2204 10 1 3.8064 -1.1210 -4.0081 11 1 1.8259 -2.5202 -4.0076 12 6 2.0322 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1945 -0.9409 3.6507 16 6 1.6612 -2.3749 3.6645 17 6 3.7242 -0.9657 3.6371 18 6 1.7147 -0.2147 4.8810 19 6 1.4053 1.1308 4.8128 20 6 0.9606 1.7957 5.9403 21 6 0.8354 1.1176 7.1383 22 6 1.1498 -0.2268 7.2077 23 6 1.5890 -0.8931 6.0790 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7083 1.1609 -3.4844 28 1 1.1486 0.5385 2.5436 29 1 2.0083 -2.9001 2.7746 30 1 2.0238 -2.8888 4.5547 31 1 0.5714 -2.3572 3.6742 32 1 4.1040 0.0559 3.6274 33 1 4.0872 -1.4794 4.5274 34 1 4.0711 -1.4909 2.7473 35 1 1.5078 1.6618 3.8780 36 1 0.7154 2.8462 5.8862 37 1 0.4922 1.6381 8.0202 38 1 1.0524 -0.7565 8.1439 39 1 1.8350 -1.9432 6.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596949766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:01 Heat of formation + Delta-G solvation = -35.986831 kcal Electronic energy + Delta-G solvation = -19774.915325 eV Core-core repulsion = 16874.418670 eV Total energy + Delta-G solvation = -2900.496656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43119 -39.82446 -36.91770 -35.70561 -33.50130 -32.09199 -31.50815 -30.39380 -28.24052 -27.19590 -25.16505 -23.88304 -23.22227 -21.35459 -20.37739 -18.73097 -18.20884 -17.21981 -16.74347 -16.39543 -15.82217 -15.78792 -15.44016 -14.86214 -14.69022 -14.60882 -14.40668 -14.18241 -13.62232 -13.35084 -13.14499 -13.02101 -12.88792 -12.77188 -12.63762 -12.53614 -12.30843 -12.09853 -11.98215 -11.87875 -11.61310 -11.04033 -10.55255 -10.12628 -10.03113 -9.79614 -9.55599 -8.13694 -6.23841 0.43692 0.52293 1.41449 1.42990 1.51444 1.99666 2.34837 2.53028 2.91348 3.15954 3.54981 3.92727 4.12080 4.17481 4.22111 4.31917 4.38079 4.62495 4.63506 4.72418 4.74071 4.81948 4.86746 4.91266 4.95079 5.02224 5.07562 5.18697 5.26894 5.33910 5.49793 5.58264 5.60529 5.65464 5.73784 5.84145 5.95892 6.12713 6.23015 6.76938 6.89405 7.42081 7.60928 8.92035 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.004761 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.177769 B = 5880.180543 C = 6314.276077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.037 0.963 4 C -0.526 4.526 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.571 6.571 14 N -0.723 5.723 15 C 0.210 3.790 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.403 0.597 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.119 0.881 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 1.333 20.195 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.055 0.945 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.449 6.449 14 N -0.378 5.378 15 C 0.124 3.876 16 C -0.213 4.213 17 C -0.210 4.210 18 C -0.090 4.090 19 C -0.153 4.153 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.137 4.137 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.241 0.759 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.126 0.747 19.974 20.020 hybrid contribution 0.109 0.027 -1.279 1.284 sum -1.017 0.774 18.695 18.739 Atomic orbital electron populations 1.21538 0.95370 0.99291 1.01425 1.18806 0.95111 0.95853 0.90047 0.94540 1.21258 1.31466 1.12693 0.90992 0.93111 1.25605 0.95245 0.95756 1.01442 1.69946 1.37272 1.23671 1.24278 0.85655 0.78650 0.78715 0.78865 1.20049 1.20179 1.20184 1.21367 0.78241 0.83788 0.85134 1.90450 1.39224 1.27987 1.87280 1.46354 1.54332 1.32446 1.04680 1.19135 0.94011 0.92019 0.82407 1.22194 1.00806 0.95272 1.02980 1.22135 0.93950 1.01979 1.02929 1.19818 1.00422 0.94424 0.94337 1.21124 1.00502 0.94067 0.99559 1.21402 0.98898 1.00944 0.92576 1.21525 0.99521 0.94896 0.98354 1.21467 0.98394 0.95029 0.98741 1.21225 0.99812 1.00741 0.91904 0.91119 0.95906 0.93489 0.92676 0.75936 0.93190 0.89331 0.92715 0.93003 0.90001 0.92764 0.86341 0.84161 0.83550 0.83425 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.87 71.98 0.64 -4.88 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.14 16 3 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.53 -30.67 8.37 25.60 0.21 -30.46 16 5 H 0.05 3.14 6.75 -2.91 -0.02 3.12 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 8 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.53 24.20 6.57 87.66 0.58 24.77 16 13 O -0.57 -29.51 11.67 -3.03 -0.04 -29.55 16 14 N -0.72 -25.69 4.77 -426.31 -2.03 -27.73 16 15 C 0.21 6.36 0.89 2.86 0.00 6.36 16 16 C -0.15 -4.66 7.86 71.98 0.57 -4.09 16 17 C -0.15 -4.73 8.37 71.98 0.60 -4.12 16 18 C -0.09 -2.21 4.80 -19.86 -0.10 -2.30 16 19 C -0.13 -3.12 9.02 22.27 0.20 -2.92 16 20 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 22 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 23 C -0.12 -2.39 9.15 22.27 0.20 -2.19 16 24 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 27 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.40 12.71 5.83 -92.71 -0.54 12.17 16 29 H 0.05 1.87 6.25 -2.38 -0.01 1.85 16 30 H 0.09 2.06 6.52 -2.39 -0.02 2.04 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.07 6.09 -2.39 -0.01 2.05 16 35 H 0.12 2.79 6.43 -2.91 -0.02 2.78 16 36 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.14 2.35 6.33 -2.91 -0.02 2.33 16 Total: -1.00 -66.79 311.61 4.70 -62.08 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.51 Total: 22.05 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 4.00 Total: -22.69 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.79 Total: -79.30 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.04 Total: -29.55 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.79 4.70 -62.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596949766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.094 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds