Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47108 * 2 1 4 4 C 1.50701 * 109.47263 * 120.00168 * 2 1 3 5 5 H 1.07990 * 120.00461 * 119.99478 * 4 2 1 6 6 C 1.37885 * 119.99618 * 299.99892 * 4 2 1 7 7 N 1.31514 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47318 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46863 * 119.99823 * 8 6 4 11 11 H 1.48494 * 109.47063 * 239.99625 * 8 6 4 12 12 C 1.50702 * 109.46833 * 239.99853 * 2 1 3 13 13 O 1.21280 * 119.99561 * 239.99862 * 12 2 1 14 14 N 1.34773 * 120.00147 * 60.00192 * 12 2 1 15 15 C 1.46500 * 119.99842 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47101 * 301.12771 * 15 14 12 17 17 C 1.52999 * 109.47149 * 61.13469 * 15 14 12 18 18 C 1.50706 * 109.46964 * 181.12973 * 15 14 12 19 19 C 1.38230 * 120.00066 * 204.52719 * 18 15 14 20 20 C 1.38237 * 120.00066 * 179.76768 * 19 18 15 21 21 C 1.38232 * 119.99797 * 0.50547 * 20 19 18 22 22 C 1.38239 * 120.00100 * 359.74451 * 21 20 19 23 23 C 1.38237 * 120.00210 * 0.02562 * 22 21 20 24 24 H 1.08992 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46934 * 300.00443 * 1 2 3 26 26 H 1.08998 * 109.47205 * 59.99935 * 1 2 3 27 27 H 0.97006 * 119.99626 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99999 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.47143 * 60.00778 * 16 15 14 30 30 H 1.09001 * 109.46926 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.47236 * 300.00240 * 16 15 14 32 32 H 1.08998 * 109.47291 * 59.99582 * 17 15 14 33 33 H 1.09001 * 109.47314 * 179.97438 * 17 15 14 34 34 H 1.09006 * 109.46659 * 299.99805 * 17 15 14 35 35 H 1.07996 * 120.00107 * 359.97438 * 19 18 15 36 36 H 1.08001 * 120.00178 * 180.23041 * 20 19 18 37 37 H 1.08002 * 120.00158 * 179.72622 * 21 20 19 38 38 H 1.07999 * 120.00231 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00164 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1873 4.8165 11 1 1.1661 -1.5865 4.8161 12 6 2.0323 -0.7105 -1.2305 13 8 2.7295 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.1955 -0.9404 -3.6507 16 6 3.7252 -0.9645 -3.6363 17 6 1.6628 -2.3746 -3.6652 18 6 1.7160 -0.2141 -4.8811 19 6 1.5938 -0.8913 -6.0799 20 6 1.1495 -0.2262 -7.2073 21 6 0.8373 1.1186 -7.1383 22 6 0.9645 1.7972 -5.9407 23 6 1.4043 1.1310 -4.8121 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7096 1.1619 3.4844 28 1 1.1494 0.5389 -2.5436 29 1 4.0720 -1.4899 -2.7465 30 1 4.0888 -1.4786 -4.5261 31 1 4.1046 0.0573 -3.6260 32 1 0.5730 -2.3574 -3.6754 33 1 2.0261 -2.8882 -4.5554 34 1 2.0095 -2.8999 -2.7753 35 1 1.8423 -1.9409 -6.1349 36 1 1.0504 -0.7563 -8.1431 37 1 0.4944 1.6393 -8.0202 38 1 0.7210 2.8480 -5.8868 39 1 1.5040 1.6612 -3.8765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596949767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -18.710136 kcal Electronic energy + Delta-G solvation = -19774.491102 eV Core-core repulsion = 16874.743620 eV Total energy + Delta-G solvation = -2899.747482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16229 -38.51106 -35.56097 -33.69434 -31.93009 -30.90422 -30.13285 -29.22047 -26.99666 -25.11010 -23.75465 -22.60753 -22.15905 -20.00429 -18.87820 -17.45109 -16.17372 -15.89713 -15.37196 -14.91871 -14.50948 -14.36817 -14.08704 -13.60457 -13.38712 -13.28638 -13.06155 -12.57052 -12.33271 -12.02328 -11.88252 -11.57422 -11.45149 -11.06869 -10.99538 -10.93704 -10.69856 -10.63846 -10.51602 -10.19546 -9.92479 -8.97554 -8.94024 -8.86687 -8.48735 -8.34105 -8.22746 -6.00755 -4.03442 1.29772 1.34368 3.33741 3.41291 3.49394 3.69256 3.79723 3.92979 4.49666 4.62196 4.84126 4.92431 5.06243 5.28371 5.32654 5.40278 5.43629 5.53943 5.79292 5.87330 5.95390 5.97504 6.09629 6.20379 6.28769 6.40059 6.45092 6.49961 6.61676 6.65094 6.68300 6.86069 6.93401 6.97376 7.21776 7.51074 7.78554 8.02849 8.19418 8.50005 9.06157 9.30642 9.62172 11.06943 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036872 B = 0.004761 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.196187 B = 5880.198006 C = 6314.320190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.497 4.497 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.524 3.476 13 O -0.541 6.541 14 N -0.740 5.740 15 C 0.212 3.788 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.074 4.074 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.117 4.117 24 H 0.031 0.969 25 H 0.092 0.908 26 H 0.011 0.989 27 H 0.259 0.741 28 H 0.394 0.606 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 0.931 -17.934 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.314 3.686 13 O -0.417 6.417 14 N -0.396 5.396 15 C 0.126 3.874 16 C -0.215 4.215 17 C -0.217 4.217 18 C -0.074 4.074 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.136 4.136 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.230 0.770 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.447 0.310 -17.686 17.694 hybrid contribution -0.095 0.123 0.692 0.709 sum -0.542 0.433 -16.994 17.008 Atomic orbital electron populations 1.21734 0.96639 0.99787 1.00826 1.18882 0.94081 0.96815 0.89537 0.93172 1.21187 1.30729 1.12717 0.88947 0.90681 1.24957 0.95176 0.95088 0.99117 1.69886 1.37289 1.23160 1.23349 0.86416 0.78590 0.79787 0.82563 1.19573 1.21107 1.21117 1.21875 0.78278 0.84227 0.84258 1.90457 1.37843 1.26745 1.86644 1.46573 1.55323 1.32547 1.05164 1.19001 0.94165 0.91793 0.82458 1.22206 0.93598 1.02260 1.03394 1.22256 1.00866 0.95415 1.03210 1.20034 0.98362 0.94096 0.94922 1.21043 0.99806 1.00096 0.92140 1.21114 0.99649 0.94760 0.98235 1.21129 1.00909 0.94764 0.97812 1.21137 0.99509 0.99907 0.92827 1.21057 0.99495 0.94122 0.98880 0.95022 0.88913 0.97035 0.93088 0.77018 0.89388 0.92598 0.92861 0.92745 0.92408 0.89722 0.85708 0.86180 0.86325 0.86018 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.69 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.50 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.08 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.52 11.70 6.57 -10.99 -0.07 11.63 16 13 O -0.54 -13.40 11.67 5.56 0.06 -13.34 16 14 N -0.74 -13.07 4.77 -48.68 -0.23 -13.30 16 15 C 0.21 3.27 0.89 -132.97 -0.12 3.16 16 16 C -0.16 -2.44 8.37 37.16 0.31 -2.13 16 17 C -0.16 -2.44 7.86 37.16 0.29 -2.15 16 18 C -0.07 -0.97 4.80 -104.62 -0.50 -1.48 16 19 C -0.11 -1.30 9.15 -39.58 -0.36 -1.66 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.46 9.02 -39.58 -0.36 -1.82 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 6.27 5.82 -40.82 -0.24 6.04 16 29 H 0.09 1.63 6.09 -51.93 -0.32 1.31 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.72 6.52 -51.93 -0.34 0.38 16 34 H 0.08 1.55 6.25 -51.93 -0.32 1.23 16 35 H 0.13 1.28 6.34 -52.49 -0.33 0.95 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.13 1.52 6.42 -52.49 -0.34 1.18 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -30.36 311.62 -7.63 -37.99 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.47 Total: 6.23 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.30 Total: -14.50 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.40 Total: -37.92 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.06 Total: -13.34 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.36 -7.63 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596949767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.282 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds