Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47108 * 2 1 4 4 C 1.50701 * 109.47263 * 120.00168 * 2 1 3 5 5 H 1.07990 * 120.00461 * 119.99478 * 4 2 1 6 6 C 1.37885 * 119.99618 * 299.99892 * 4 2 1 7 7 N 1.31514 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47318 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46863 * 119.99823 * 8 6 4 11 11 H 1.48494 * 109.47063 * 239.99625 * 8 6 4 12 12 C 1.50702 * 109.46833 * 239.99853 * 2 1 3 13 13 O 1.21280 * 119.99561 * 239.99862 * 12 2 1 14 14 N 1.34773 * 120.00147 * 60.00192 * 12 2 1 15 15 C 1.46500 * 119.99842 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47101 * 301.12771 * 15 14 12 17 17 C 1.52999 * 109.47149 * 61.13469 * 15 14 12 18 18 C 1.50706 * 109.46964 * 181.12973 * 15 14 12 19 19 C 1.38230 * 120.00066 * 204.52719 * 18 15 14 20 20 C 1.38237 * 120.00066 * 179.76768 * 19 18 15 21 21 C 1.38232 * 119.99797 * 0.50547 * 20 19 18 22 22 C 1.38239 * 120.00100 * 359.74451 * 21 20 19 23 23 C 1.38237 * 120.00210 * 0.02562 * 22 21 20 24 24 H 1.08992 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46934 * 300.00443 * 1 2 3 26 26 H 1.08998 * 109.47205 * 59.99935 * 1 2 3 27 27 H 0.97006 * 119.99626 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99999 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.47143 * 60.00778 * 16 15 14 30 30 H 1.09001 * 109.46926 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.47236 * 300.00240 * 16 15 14 32 32 H 1.08998 * 109.47291 * 59.99582 * 17 15 14 33 33 H 1.09001 * 109.47314 * 179.97438 * 17 15 14 34 34 H 1.09006 * 109.46659 * 299.99805 * 17 15 14 35 35 H 1.07996 * 120.00107 * 359.97438 * 19 18 15 36 36 H 1.08001 * 120.00178 * 180.23041 * 20 19 18 37 37 H 1.08002 * 120.00158 * 179.72622 * 21 20 19 38 38 H 1.07999 * 120.00231 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00164 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1873 4.8165 11 1 1.1661 -1.5865 4.8161 12 6 2.0323 -0.7105 -1.2305 13 8 2.7295 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.1955 -0.9404 -3.6507 16 6 3.7252 -0.9645 -3.6363 17 6 1.6628 -2.3746 -3.6652 18 6 1.7160 -0.2141 -4.8811 19 6 1.5938 -0.8913 -6.0799 20 6 1.1495 -0.2262 -7.2073 21 6 0.8373 1.1186 -7.1383 22 6 0.9645 1.7972 -5.9407 23 6 1.4043 1.1310 -4.8121 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7096 1.1619 3.4844 28 1 1.1494 0.5389 -2.5436 29 1 4.0720 -1.4899 -2.7465 30 1 4.0888 -1.4786 -4.5261 31 1 4.1046 0.0573 -3.6260 32 1 0.5730 -2.3574 -3.6754 33 1 2.0261 -2.8882 -4.5554 34 1 2.0095 -2.8999 -2.7753 35 1 1.8423 -1.9409 -6.1349 36 1 1.0504 -0.7563 -8.1431 37 1 0.4944 1.6393 -8.0202 38 1 0.7210 2.8480 -5.8868 39 1 1.5040 1.6612 -3.8765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596949767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = -36.101566 kcal Electronic energy + Delta-G solvation = -19775.245251 eV Core-core repulsion = 16874.743620 eV Total energy + Delta-G solvation = -2900.501631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43224 -39.82530 -36.91856 -35.70765 -33.50263 -32.09291 -31.50842 -30.39432 -28.24023 -27.20015 -25.16649 -23.88394 -23.22321 -21.35581 -20.37778 -18.73374 -18.21576 -17.22033 -16.74649 -16.39106 -15.82328 -15.78882 -15.43728 -14.85967 -14.69417 -14.60961 -14.41184 -14.18503 -13.63052 -13.35371 -13.14373 -13.02424 -12.89387 -12.77083 -12.62020 -12.53400 -12.30813 -12.10200 -11.99888 -11.88068 -11.61278 -11.02239 -10.55692 -10.12741 -10.03202 -9.79600 -9.55599 -8.14269 -6.24176 0.43724 0.52284 1.39388 1.41397 1.54875 1.99627 2.34873 2.52867 2.91376 3.15463 3.54917 3.92702 4.12053 4.17456 4.22125 4.31909 4.38038 4.62494 4.63505 4.72332 4.74005 4.81920 4.86719 4.91248 4.95016 5.02099 5.07546 5.18683 5.26872 5.33874 5.49811 5.58244 5.60516 5.65473 5.73835 5.84116 5.95840 6.12711 6.22808 6.77177 6.89470 7.41989 7.60915 8.91880 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036872 B = 0.004761 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.196187 B = 5880.198006 C = 6314.320190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.022 3.978 3 H 0.037 0.963 4 C -0.524 4.524 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.526 3.474 13 O -0.571 6.571 14 N -0.723 5.723 15 C 0.210 3.790 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.089 4.089 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.134 4.134 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.403 0.597 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 1.348 -20.201 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.055 0.945 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.315 3.685 13 O -0.450 6.450 14 N -0.378 5.378 15 C 0.124 3.876 16 C -0.210 4.210 17 C -0.213 4.213 18 C -0.090 4.090 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.153 4.153 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.241 0.759 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.129 0.755 -19.984 20.030 hybrid contribution 0.100 0.042 1.287 1.292 sum -1.028 0.797 -18.696 18.741 Atomic orbital electron populations 1.21538 0.95355 0.99307 1.01423 1.18817 0.95128 0.95867 0.90065 0.94518 1.21316 1.31304 1.12611 0.90983 0.93134 1.25610 0.95258 0.95768 1.01463 1.69966 1.37421 1.23676 1.24152 0.85541 0.78299 0.78591 0.79435 1.20372 1.20059 1.20038 1.21364 0.78240 0.83791 0.85135 1.90452 1.39227 1.27996 1.87278 1.46354 1.54344 1.32435 1.04678 1.19134 0.93998 0.92025 0.82409 1.22136 0.93956 1.01976 1.02934 1.22195 1.00815 0.95269 1.02975 1.19815 1.00417 0.94438 0.94321 1.21221 0.99800 1.00749 0.91909 1.21467 0.98370 0.95035 0.98756 1.21525 0.99530 0.94881 0.98363 1.21402 0.98914 1.00935 0.92564 1.21125 1.00524 0.94061 0.99548 0.95883 0.91131 0.93482 0.92696 0.75930 0.92780 0.89998 0.92988 0.92708 0.89330 0.93199 0.84603 0.83423 0.83549 0.84160 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.87 71.98 0.64 -4.88 16 2 C 0.02 1.14 2.64 -12.28 -0.03 1.11 16 3 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.52 -30.58 8.37 25.60 0.21 -30.37 16 5 H 0.05 3.15 6.75 -2.92 -0.02 3.13 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -51.80 11.32 21.45 0.24 -51.56 16 8 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 9 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.53 24.21 6.57 87.66 0.58 24.78 16 13 O -0.57 -29.57 11.67 -3.03 -0.04 -29.61 16 14 N -0.72 -25.70 4.77 -426.32 -2.03 -27.73 16 15 C 0.21 6.37 0.89 2.86 0.00 6.37 16 16 C -0.15 -4.73 8.37 71.98 0.60 -4.13 16 17 C -0.15 -4.66 7.86 71.98 0.57 -4.09 16 18 C -0.09 -2.21 4.80 -19.86 -0.10 -2.30 16 19 C -0.12 -2.39 9.15 22.27 0.20 -2.19 16 20 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 22 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 23 C -0.13 -3.12 9.02 22.27 0.20 -2.92 16 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 26 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 27 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 28 H 0.40 12.71 5.82 -92.71 -0.54 12.17 16 29 H 0.05 2.06 6.09 -2.39 -0.01 2.05 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 2.06 6.52 -2.39 -0.02 2.05 16 34 H 0.05 1.87 6.25 -2.38 -0.01 1.85 16 35 H 0.14 2.35 6.34 -2.91 -0.02 2.33 16 36 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.12 2.79 6.42 -2.91 -0.02 2.77 16 Total: -1.00 -66.99 311.62 4.70 -62.28 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.51 Total: 21.83 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 4.00 Total: -22.65 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -1.79 Total: -79.29 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.04 Total: -29.61 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.99 4.70 -62.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596949767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.181 kcal (2) G-P(sol) polarization free energy of solvation -66.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds