Wall clock time and date at job start Mon Mar 30 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47653 * 2 1 4 4 N 1.46495 * 109.47520 * 120.00734 * 2 1 3 5 5 C 1.34776 * 120.00377 * 123.69831 * 4 2 1 6 6 O 1.21287 * 119.99790 * 184.85665 * 5 4 2 7 7 C 1.50697 * 120.00055 * 4.85754 * 5 4 2 8 8 H 1.09007 * 109.46779 * 319.90535 * 7 5 4 9 9 C 1.53000 * 109.47316 * 79.90416 * 7 5 4 10 10 C 1.50702 * 109.47138 * 199.90653 * 7 5 4 11 11 H 1.07993 * 120.00196 * 355.35539 * 10 7 5 12 12 C 1.37879 * 119.99552 * 175.35528 * 10 7 5 13 13 N 1.31517 * 119.99481 * 161.42801 * 12 10 7 14 14 Si 1.86796 * 120.00490 * 341.70164 * 12 10 7 15 15 H 1.48498 * 109.47406 * 179.72457 * 14 12 10 16 16 H 1.48498 * 109.47098 * 299.72497 * 14 12 10 17 17 H 1.48496 * 109.47088 * 59.72492 * 14 12 10 18 18 C 1.39930 * 119.99815 * 303.70567 * 4 2 1 19 19 C 1.38866 * 120.07623 * 94.39049 * 18 4 2 20 20 C 1.38113 * 119.93021 * 179.76652 * 19 18 4 21 21 C 1.38277 * 120.06995 * 0.48743 * 20 19 18 22 22 C 1.38285 * 120.14129 * 359.76738 * 21 20 19 23 23 C 1.38113 * 120.06921 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46830 * 305.38384 * 1 2 3 25 25 H 1.09001 * 109.47838 * 65.38223 * 1 2 3 26 26 H 1.09000 * 109.47505 * 185.38566 * 1 2 3 27 27 H 1.09008 * 109.46789 * 240.00189 * 2 1 3 28 28 H 1.08995 * 109.47692 * 176.42999 * 3 2 1 29 29 H 1.09001 * 109.47371 * 296.43765 * 3 2 1 30 30 H 1.09004 * 109.46509 * 56.42902 * 3 2 1 31 31 H 1.08994 * 109.47139 * 174.03774 * 9 7 5 32 32 H 1.09004 * 109.47249 * 294.04169 * 9 7 5 33 33 H 1.09000 * 109.46870 * 54.03975 * 9 7 5 34 34 H 0.97002 * 120.00239 * 355.19624 * 13 12 10 35 35 H 1.08008 * 120.03069 * 359.97438 * 19 18 4 36 36 H 1.08003 * 119.95954 * 180.25312 * 20 19 18 37 37 H 1.07994 * 119.92967 * 179.74258 * 21 20 19 38 38 H 1.08003 * 119.96186 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03203 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8536 -1.7414 1.0737 6 8 3.1880 -2.3679 2.0569 7 6 3.3719 -2.1377 -0.2847 8 1 2.5715 -2.0480 -1.0193 9 6 4.5298 -1.2179 -0.6772 10 6 3.8561 -3.5642 -0.2411 11 1 3.8646 -4.1031 0.6947 12 6 4.2883 -4.1811 -1.3959 13 7 5.0371 -5.2599 -1.3244 14 14 3.8167 -3.4803 -3.0620 15 1 4.4081 -4.3174 -4.1365 16 1 2.3377 -3.4750 -3.1961 17 1 4.3292 -2.0914 -3.1778 18 6 1.6176 -0.2597 2.4655 19 6 0.5292 -0.8538 3.0907 20 6 0.1392 -0.4293 4.3458 21 6 0.8251 0.5930 4.9756 22 6 1.9061 1.1902 4.3535 23 6 2.3037 0.7674 3.1002 24 1 -0.3633 0.5951 0.8379 25 1 -0.3635 0.4281 -0.9342 26 1 -0.3634 -1.0231 0.0965 27 1 1.8933 -0.5139 -0.8901 28 1 3.1281 1.4431 0.0640 29 1 1.7299 1.9375 -0.9202 30 1 1.6254 1.9743 0.8563 31 1 4.9731 -1.5691 -1.6089 32 1 4.1574 -0.2023 -0.8120 33 1 5.2837 -1.2268 0.1100 34 1 5.3433 -5.5815 -0.4620 35 1 -0.0097 -1.6492 2.5973 36 1 -0.7047 -0.8937 4.8342 37 1 0.5156 0.9259 5.9552 38 1 2.4395 1.9887 4.8479 39 1 3.1478 1.2345 2.6148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597191975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:56 Heat of formation + Delta-G solvation = -9.807641 kcal Electronic energy + Delta-G solvation = -20301.963962 eV Core-core repulsion = 17402.602521 eV Total energy + Delta-G solvation = -2899.361441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29891 -38.13984 -36.03778 -33.87110 -31.87738 -31.18564 -30.85993 -29.03028 -27.15951 -24.85504 -23.58365 -22.39850 -21.92841 -20.93346 -18.76322 -17.26047 -16.64891 -16.41102 -15.90281 -15.32835 -14.47660 -14.07880 -13.86970 -13.63261 -13.43369 -13.33456 -13.06575 -12.63551 -12.51136 -12.14510 -12.11445 -11.81601 -11.68781 -11.38872 -11.25564 -11.03925 -10.95899 -10.76429 -10.49363 -10.12358 -9.78851 -8.88892 -8.85087 -8.81568 -8.56653 -8.39062 -8.22974 -6.46130 -4.04570 1.41600 1.50270 3.31921 3.37916 3.40350 3.49707 3.57318 3.86038 4.48206 4.92146 5.01936 5.02990 5.17110 5.18806 5.22735 5.29727 5.51653 5.57887 5.63397 5.68159 5.69483 5.84913 5.90509 6.03241 6.09543 6.11890 6.25548 6.30518 6.43297 6.46223 6.52453 6.57336 6.73536 6.81341 6.86652 7.22402 7.39568 7.74234 8.11752 8.46131 9.00810 9.06819 9.62919 10.93804 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.006482 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.074112 B = 4318.768818 C = 4718.685873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 C -0.164 4.164 4 N -0.590 5.590 5 C 0.533 3.467 6 O -0.524 6.524 7 C 0.008 3.992 8 H 0.040 0.960 9 C -0.145 4.145 10 C -0.591 4.591 11 H 0.072 0.928 12 C 0.034 3.966 13 N -0.901 5.901 14 Si 1.035 2.965 15 H -0.283 1.283 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.162 3.838 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.117 4.117 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.048 0.952 34 H 0.271 0.729 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 16.055 4.480 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.222 4.222 4 N -0.324 5.324 5 C 0.325 3.675 6 O -0.397 6.397 7 C -0.014 4.014 8 H 0.058 0.942 9 C -0.203 4.203 10 C -0.629 4.629 11 H 0.090 0.910 12 C -0.172 4.172 13 N -0.534 5.534 14 Si 0.863 3.137 15 H -0.209 1.209 16 H -0.209 1.209 17 H -0.199 1.199 18 C 0.072 3.928 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.145 4.145 22 C -0.136 4.136 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.605 15.377 3.358 18.439 hybrid contribution -0.152 0.273 1.712 1.740 sum -9.757 15.650 5.070 19.126 Atomic orbital electron populations 1.22173 0.95158 1.02589 1.02080 1.21292 0.94256 0.93393 0.88556 1.22256 1.01924 0.95961 1.02093 1.46080 1.49352 1.33356 1.03589 1.21642 0.75820 0.76791 0.93271 1.90586 1.57031 1.51269 1.40818 1.19196 0.94695 0.98509 0.88997 0.94196 1.22206 0.99321 0.96611 1.02171 1.21927 1.47315 0.95533 0.98089 0.90957 1.25722 0.93264 0.95460 1.02728 1.70807 1.29672 1.24191 1.28751 0.84228 0.76820 0.76247 0.76448 1.20896 1.20888 1.19866 1.17573 0.93904 0.94551 0.86757 1.21422 0.96623 0.99475 0.95451 1.21008 1.00190 0.97401 0.94832 1.21094 0.96457 0.97151 0.99815 1.20990 0.97352 1.00323 0.94889 1.21398 0.99516 0.97386 0.95318 0.92438 0.91498 0.92013 0.87640 0.91930 0.91577 0.92377 0.91592 0.95127 0.93271 0.91938 0.86114 0.86082 0.86272 0.86103 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.73 37.15 0.32 -1.66 16 2 C 0.13 1.86 2.62 -67.94 -0.18 1.68 16 3 C -0.16 -1.96 8.56 37.15 0.32 -1.64 16 4 N -0.59 -10.69 2.43 -106.39 -0.26 -10.95 16 5 C 0.53 12.36 6.79 -10.99 -0.07 12.28 16 6 O -0.52 -14.36 15.65 5.55 0.09 -14.27 16 7 C 0.01 0.19 1.36 -92.92 -0.13 0.06 16 8 H 0.04 0.89 5.03 -51.93 -0.26 0.63 16 9 C -0.15 -3.10 8.71 37.16 0.32 -2.78 16 10 C -0.59 -17.16 8.63 -34.44 -0.30 -17.46 16 11 H 0.07 2.40 7.14 -52.49 -0.37 2.02 16 12 C 0.03 0.97 5.28 -17.82 -0.09 0.88 16 13 N -0.90 -27.92 13.70 55.43 0.76 -27.16 16 14 Si 1.03 24.14 26.31 -169.99 -4.47 19.67 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -5.67 5.72 56.52 0.32 -5.35 16 18 C 0.16 2.73 3.46 -83.69 -0.29 2.44 16 19 C -0.11 -1.73 9.38 -39.39 -0.37 -2.10 16 20 C -0.12 -1.51 10.04 -39.61 -0.40 -1.90 16 21 C -0.13 -1.52 10.04 -39.55 -0.40 -1.92 16 22 C -0.12 -1.47 10.04 -39.61 -0.40 -1.87 16 23 C -0.12 -1.75 8.65 -39.39 -0.34 -2.09 16 24 H 0.06 0.68 7.58 -51.93 -0.39 0.28 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.11 1.63 5.07 -51.92 -0.26 1.37 16 28 H 0.06 0.79 7.19 -51.93 -0.37 0.42 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.67 7.10 -51.93 -0.37 0.30 16 31 H 0.07 1.44 4.80 -51.93 -0.25 1.19 16 32 H 0.03 0.53 6.30 -51.93 -0.33 0.20 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.27 8.50 8.73 -40.82 -0.36 8.14 16 35 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 39 H 0.12 1.73 7.92 -52.49 -0.42 1.31 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -33.58 311.97 -6.82 -40.40 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.64 Total: 3.70 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.00 Total: -16.08 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.50 Total: -38.11 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.09 Total: -14.27 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.47 Total: 19.67 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.58 -6.82 -40.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597191975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.588 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds