Wall clock time and date at job start Mon Mar 30 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47653 * 2 1 4 4 N 1.46495 * 109.47520 * 120.00734 * 2 1 3 5 5 C 1.34776 * 120.00377 * 123.69831 * 4 2 1 6 6 O 1.21287 * 119.99790 * 184.85665 * 5 4 2 7 7 C 1.50697 * 120.00055 * 4.85754 * 5 4 2 8 8 H 1.09007 * 109.46779 * 319.90535 * 7 5 4 9 9 C 1.53000 * 109.47316 * 79.90416 * 7 5 4 10 10 C 1.50702 * 109.47138 * 199.90653 * 7 5 4 11 11 H 1.07993 * 120.00196 * 355.35539 * 10 7 5 12 12 C 1.37879 * 119.99552 * 175.35528 * 10 7 5 13 13 N 1.31517 * 119.99481 * 161.42801 * 12 10 7 14 14 Si 1.86796 * 120.00490 * 341.70164 * 12 10 7 15 15 H 1.48498 * 109.47406 * 179.72457 * 14 12 10 16 16 H 1.48498 * 109.47098 * 299.72497 * 14 12 10 17 17 H 1.48496 * 109.47088 * 59.72492 * 14 12 10 18 18 C 1.39930 * 119.99815 * 303.70567 * 4 2 1 19 19 C 1.38866 * 120.07623 * 94.39049 * 18 4 2 20 20 C 1.38113 * 119.93021 * 179.76652 * 19 18 4 21 21 C 1.38277 * 120.06995 * 0.48743 * 20 19 18 22 22 C 1.38285 * 120.14129 * 359.76738 * 21 20 19 23 23 C 1.38113 * 120.06921 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46830 * 305.38384 * 1 2 3 25 25 H 1.09001 * 109.47838 * 65.38223 * 1 2 3 26 26 H 1.09000 * 109.47505 * 185.38566 * 1 2 3 27 27 H 1.09008 * 109.46789 * 240.00189 * 2 1 3 28 28 H 1.08995 * 109.47692 * 176.42999 * 3 2 1 29 29 H 1.09001 * 109.47371 * 296.43765 * 3 2 1 30 30 H 1.09004 * 109.46509 * 56.42902 * 3 2 1 31 31 H 1.08994 * 109.47139 * 174.03774 * 9 7 5 32 32 H 1.09004 * 109.47249 * 294.04169 * 9 7 5 33 33 H 1.09000 * 109.46870 * 54.03975 * 9 7 5 34 34 H 0.97002 * 120.00239 * 355.19624 * 13 12 10 35 35 H 1.08008 * 120.03069 * 359.97438 * 19 18 4 36 36 H 1.08003 * 119.95954 * 180.25312 * 20 19 18 37 37 H 1.07994 * 119.92967 * 179.74258 * 21 20 19 38 38 H 1.08003 * 119.96186 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03203 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8536 -1.7414 1.0737 6 8 3.1880 -2.3679 2.0569 7 6 3.3719 -2.1377 -0.2847 8 1 2.5715 -2.0480 -1.0193 9 6 4.5298 -1.2179 -0.6772 10 6 3.8561 -3.5642 -0.2411 11 1 3.8646 -4.1031 0.6947 12 6 4.2883 -4.1811 -1.3959 13 7 5.0371 -5.2599 -1.3244 14 14 3.8167 -3.4803 -3.0620 15 1 4.4081 -4.3174 -4.1365 16 1 2.3377 -3.4750 -3.1961 17 1 4.3292 -2.0914 -3.1778 18 6 1.6176 -0.2597 2.4655 19 6 0.5292 -0.8538 3.0907 20 6 0.1392 -0.4293 4.3458 21 6 0.8251 0.5930 4.9756 22 6 1.9061 1.1902 4.3535 23 6 2.3037 0.7674 3.1002 24 1 -0.3633 0.5951 0.8379 25 1 -0.3635 0.4281 -0.9342 26 1 -0.3634 -1.0231 0.0965 27 1 1.8933 -0.5139 -0.8901 28 1 3.1281 1.4431 0.0640 29 1 1.7299 1.9375 -0.9202 30 1 1.6254 1.9743 0.8563 31 1 4.9731 -1.5691 -1.6089 32 1 4.1574 -0.2023 -0.8120 33 1 5.2837 -1.2268 0.1100 34 1 5.3433 -5.5815 -0.4620 35 1 -0.0097 -1.6492 2.5973 36 1 -0.7047 -0.8937 4.8342 37 1 0.5156 0.9259 5.9552 38 1 2.4395 1.9887 4.8479 39 1 3.1478 1.2345 2.6148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597191975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:56 Heat of formation + Delta-G solvation = -31.358600 kcal Electronic energy + Delta-G solvation = -20302.898481 eV Core-core repulsion = 17402.602521 eV Total energy + Delta-G solvation = -2900.295961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72240 -39.49686 -37.45048 -35.88921 -33.33147 -32.97328 -31.92194 -30.30853 -28.12159 -26.85550 -25.21191 -23.46795 -23.20501 -22.41578 -20.31737 -19.27470 -18.20807 -17.80413 -17.07806 -16.63464 -16.04395 -15.46794 -15.23533 -15.08706 -14.96884 -14.51984 -14.38264 -14.15350 -13.79859 -13.66536 -13.49634 -13.06183 -13.00639 -12.96868 -12.52027 -12.41028 -12.30654 -12.04976 -11.97831 -11.75772 -11.56538 -11.02218 -10.60557 -10.44071 -9.91039 -9.88790 -9.65353 -8.80510 -6.40001 0.31688 0.43103 1.46600 1.56337 1.71357 1.76177 2.02245 2.53284 2.78685 3.02190 3.84415 3.91926 3.98202 4.05721 4.15528 4.21987 4.26045 4.41339 4.50913 4.55961 4.61986 4.64436 4.73532 4.78825 4.85573 4.93505 5.01152 5.06171 5.07334 5.23114 5.34961 5.41344 5.46601 5.54008 5.60495 5.70101 5.82786 6.00792 6.18394 6.42569 6.55149 7.33433 7.41678 8.57855 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.006482 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.074112 B = 4318.768818 C = 4718.685873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.112 3.888 3 C -0.156 4.156 4 N -0.575 5.575 5 C 0.528 3.472 6 O -0.586 6.586 7 C 0.006 3.994 8 H 0.067 0.933 9 C -0.137 4.137 10 C -0.604 4.604 11 H 0.008 0.992 12 C -0.018 4.018 13 N -0.933 5.933 14 Si 1.079 2.921 15 H -0.289 1.289 16 H -0.256 1.256 17 H -0.223 1.223 18 C 0.129 3.871 19 C -0.133 4.133 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.130 4.130 24 H 0.061 0.939 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 20.076 3.633 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.011 3.989 3 C -0.214 4.214 4 N -0.306 5.306 5 C 0.320 3.680 6 O -0.464 6.464 7 C -0.016 4.016 8 H 0.084 0.916 9 C -0.195 4.195 10 C -0.642 4.642 11 H 0.027 0.973 12 C -0.216 4.216 13 N -0.568 5.568 14 Si 0.896 3.104 15 H -0.215 1.215 16 H -0.180 1.180 17 H -0.146 1.146 18 C 0.040 3.960 19 C -0.152 4.152 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.149 4.149 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.423 19.469 2.527 22.714 hybrid contribution 0.334 -0.974 2.157 2.390 sum -11.089 18.495 4.684 22.067 Atomic orbital electron populations 1.22120 0.93308 1.01902 1.03900 1.21696 0.95879 0.94670 0.86614 1.22201 1.01320 0.93945 1.03953 1.45913 1.47264 1.31634 1.05744 1.21523 0.76511 0.77748 0.92248 1.90550 1.59793 1.53791 1.42268 1.19140 0.96308 0.95691 0.90465 0.91563 1.22078 0.97694 0.98525 1.01176 1.21995 1.47879 0.98531 0.95765 0.97333 1.27542 0.91879 0.94711 1.07433 1.70968 1.32279 1.26256 1.27262 0.83770 0.78285 0.77987 0.70323 1.21527 1.18027 1.14638 1.17825 0.95320 0.96200 0.86701 1.21468 0.97108 0.99757 0.96908 1.21344 1.00867 0.97535 0.93721 1.21552 0.95392 0.95832 1.00937 1.21396 0.97339 1.00599 0.93815 1.21512 0.99592 0.97314 0.96462 0.92036 0.88403 0.93772 0.88258 0.92681 0.88476 0.91921 0.91615 0.90467 0.95358 0.94362 0.87577 0.83621 0.82571 0.82929 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.73 71.98 0.63 -2.78 16 2 C 0.11 3.01 2.62 44.99 0.12 3.12 16 3 C -0.16 -3.16 8.56 71.98 0.62 -2.54 16 4 N -0.57 -20.68 2.43 -608.91 -1.48 -22.16 16 5 C 0.53 25.25 6.79 87.66 0.59 25.84 16 6 O -0.59 -34.23 15.65 -3.05 -0.05 -34.27 16 7 C 0.01 0.27 1.36 -12.29 -0.02 0.25 16 8 H 0.07 2.83 5.03 -2.38 -0.01 2.82 16 9 C -0.14 -5.65 8.71 71.98 0.63 -5.02 16 10 C -0.60 -36.88 8.63 25.60 0.22 -36.66 16 11 H 0.01 0.60 7.14 -2.91 -0.02 0.58 16 12 C -0.02 -1.09 5.28 84.65 0.45 -0.64 16 13 N -0.93 -60.67 13.70 21.45 0.29 -60.38 16 14 Si 1.08 47.20 26.31 68.60 1.80 49.00 16 15 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.22 -8.02 5.72 99.48 0.57 -7.45 16 18 C 0.13 4.30 3.46 38.15 0.13 4.43 16 19 C -0.13 -4.16 9.38 22.39 0.21 -3.95 16 20 C -0.12 -2.81 10.04 22.25 0.22 -2.59 16 21 C -0.12 -2.45 10.04 22.29 0.22 -2.23 16 22 C -0.11 -2.51 10.04 22.25 0.22 -2.29 16 23 C -0.13 -3.69 8.65 22.39 0.19 -3.49 16 24 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 25 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 2.75 5.07 -2.38 -0.01 2.74 16 28 H 0.05 1.20 7.19 -2.39 -0.02 1.18 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.23 7.10 -2.39 -0.02 1.21 16 31 H 0.07 2.69 4.80 -2.39 -0.01 2.68 16 32 H 0.08 2.44 6.30 -2.38 -0.02 2.42 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.25 16.78 8.73 -92.71 -0.81 15.97 16 35 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.12 3.34 7.92 -2.91 -0.02 3.32 16 Total: -1.00 -81.29 311.97 5.87 -75.42 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.86 Total: 20.94 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 4.44 Total: -28.55 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.18 Total: -82.54 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.05 Total: -34.27 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.80 Total: 49.00 kcal Total: -81.29 5.87 -75.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597191975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.059 kcal (2) G-P(sol) polarization free energy of solvation -81.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds