Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99644 * 2 1 4 4 C 1.50695 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99992 * 270.01922 * 4 3 2 6 6 C 1.38217 * 120.00043 * 179.97438 * 5 4 3 7 7 C 1.38261 * 119.99839 * 359.74834 * 6 5 4 8 8 C 1.38211 * 119.99906 * 0.50381 * 7 6 5 9 9 C 1.50702 * 120.00145 * 179.76486 * 8 7 6 10 10 N 1.46902 * 109.47215 * 269.73164 * 9 8 7 11 11 C 1.47961 * 111.00005 * 169.99576 * 10 9 8 12 12 C 1.53934 * 86.17939 * 137.58072 * 11 10 9 13 13 C 1.50703 * 113.73399 * 221.81705 * 12 11 10 14 14 H 1.07999 * 119.99920 * 358.09577 * 13 12 11 15 15 C 1.37877 * 119.99669 * 178.10223 * 13 12 11 16 16 N 1.31510 * 120.00506 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99624 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47293 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47387 * 119.99775 * 17 15 13 20 20 H 1.48498 * 109.47096 * 240.00236 * 17 15 13 21 21 C 1.48296 * 111.00409 * 269.34877 * 10 9 8 22 22 C 1.38217 * 120.00160 * 89.99604 * 4 3 2 23 23 H 1.08996 * 109.46964 * 60.01026 * 1 2 3 24 24 H 1.09002 * 109.46410 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47355 * 300.00165 * 1 2 3 26 26 H 1.09003 * 109.47617 * 59.99399 * 3 2 1 27 27 H 1.09004 * 109.46807 * 299.99399 * 3 2 1 28 28 H 1.07994 * 119.99873 * 359.97438 * 5 4 3 29 29 H 1.07996 * 119.99929 * 180.02562 * 6 5 4 30 30 H 1.07994 * 119.99891 * 180.27605 * 7 6 5 31 31 H 1.09001 * 109.47251 * 149.72740 * 9 8 7 32 32 H 1.09004 * 109.46551 * 29.73106 * 9 8 7 33 33 H 1.09007 * 113.75652 * 23.26342 * 11 10 9 34 34 H 1.08993 * 113.76177 * 251.90248 * 11 10 9 35 35 H 1.09002 * 113.73279 * 90.64057 * 12 11 10 36 36 H 0.96995 * 120.00309 * 180.02562 * 16 15 13 37 37 H 1.09001 * 113.86054 * 108.14174 * 21 10 9 38 38 H 1.09000 * 113.76062 * 336.68481 * 21 10 9 39 39 H 1.08000 * 119.99748 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2011 1.1319 1.1983 6 6 5.5789 1.0223 1.1989 7 6 6.2681 0.9622 0.0018 8 6 5.5801 1.0221 -1.1954 9 6 6.3317 0.9619 -2.5002 10 7 6.6858 2.3230 -2.9247 11 6 7.6244 2.2946 -4.0681 12 6 6.7751 3.4335 -4.6608 13 6 6.5224 3.2951 -6.1400 14 1 6.9521 2.4684 -6.6862 15 6 5.7426 4.2239 -6.7960 16 7 5.2199 5.2309 -6.1310 17 14 5.4299 4.0527 -8.6297 18 1 6.1265 2.8446 -9.1400 19 1 3.9708 3.9232 -8.8731 20 1 5.9445 5.2546 -9.3339 21 6 5.6260 2.9045 -3.7837 22 6 4.2019 1.1318 -1.1961 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.6624 1.1748 2.1333 29 1 6.1168 0.9792 2.1344 30 1 7.3443 0.8721 0.0023 31 1 5.7041 0.4961 -3.2599 32 1 7.2404 0.3742 -2.3692 33 1 7.5850 1.3710 -4.6457 34 1 8.6404 2.5930 -3.8098 35 1 7.1190 4.4290 -4.3799 36 1 4.6710 5.8841 -6.5924 37 1 5.0466 3.6899 -3.2984 38 1 5.0034 2.1590 -4.2783 39 1 3.6640 1.1746 -2.1316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = -9.843690 kcal Electronic energy + Delta-G solvation = -18957.404377 eV Core-core repulsion = 16058.041372 eV Total energy + Delta-G solvation = -2899.363004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90946 -39.91886 -38.47905 -34.91564 -33.65326 -32.56812 -30.09329 -28.21682 -27.30343 -26.72208 -26.21006 -24.37014 -22.87567 -21.40992 -20.43140 -18.64633 -17.58213 -17.30010 -17.03307 -16.74849 -16.53277 -16.23974 -15.91858 -15.68096 -15.16742 -14.81501 -14.00793 -13.95430 -13.59854 -13.45134 -13.37718 -13.17388 -13.09486 -12.89525 -12.47056 -12.32507 -12.24296 -12.08361 -11.71537 -11.49952 -11.16564 -10.96215 -10.68793 -10.54670 -9.77199 -9.66571 -9.52200 -8.15933 -6.27734 0.36017 0.47908 1.40244 1.42153 1.53699 2.41268 2.61912 3.11914 3.13768 3.40951 3.80874 3.83349 3.97995 4.16008 4.23099 4.31264 4.35073 4.39805 4.48867 4.51193 4.53581 4.58522 4.63497 4.74397 4.78619 4.83287 4.85733 4.97911 5.09887 5.14891 5.21656 5.44502 5.56914 5.62298 5.62967 5.76567 5.84338 6.09453 6.17528 6.28619 6.35533 6.81533 7.41012 8.93771 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.004606 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.037259 B = 6077.470608 C = 7110.242403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.104 3.896 4 C -0.106 4.106 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.082 4.082 9 C 0.059 3.941 10 N -0.482 5.482 11 C 0.013 3.987 12 C 0.020 3.980 13 C -0.533 4.533 14 H 0.059 0.941 15 C 0.015 3.985 16 N -0.922 5.922 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.279 1.279 21 C 0.030 3.970 22 C -0.110 4.110 23 H 0.044 0.956 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.135 0.865 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 -9.875 14.415 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.028 3.972 4 C -0.106 4.106 5 C -0.126 4.126 6 C -0.139 4.139 7 C -0.124 4.124 8 C -0.082 4.082 9 C -0.069 4.069 10 N -0.204 5.204 11 C -0.116 4.116 12 C 0.000 4.000 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.184 4.184 16 N -0.561 5.561 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.205 1.205 21 C -0.099 4.099 22 C -0.129 4.129 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.153 0.847 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.904 -9.585 15.004 18.468 hybrid contribution -0.846 0.063 -1.915 2.094 sum -5.750 -9.522 13.090 17.178 Atomic orbital electron populations 1.22959 0.79370 1.03920 1.00977 1.87925 1.21516 1.27989 1.95601 1.21370 0.89165 0.84961 1.01681 1.19757 0.94835 1.02459 0.93568 1.21297 0.94770 0.98982 0.97536 1.21443 0.94240 0.99629 0.98620 1.21274 1.00606 0.98821 0.91706 1.19814 0.93334 0.99754 0.95337 1.21604 0.99381 0.92070 0.93833 1.68539 1.08143 1.16781 1.26924 1.23954 0.97456 0.99171 0.90995 1.20299 0.92250 0.93635 0.93768 1.21476 1.31073 1.10279 0.94287 0.92235 1.25817 0.95410 0.94593 1.02594 1.70100 1.34116 1.14146 1.37703 0.85527 0.77834 0.78329 0.80109 1.18790 1.20669 1.20495 1.23824 0.95295 0.97423 0.93383 1.20990 0.94207 0.99974 0.97684 0.93713 0.88386 0.92423 0.90327 0.92885 0.83715 0.82922 0.84716 0.94214 0.89013 0.91778 0.89910 0.95697 0.92869 0.93689 0.93505 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -10.37 10.69 -148.98 -1.59 -11.96 16 3 C 0.10 2.52 6.06 71.23 0.43 2.95 16 4 C -0.11 -2.99 5.51 -19.86 -0.11 -3.10 16 5 C -0.11 -2.57 9.70 22.27 0.22 -2.36 16 6 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 7 C -0.11 -2.88 9.70 22.27 0.22 -2.66 16 8 C -0.08 -2.65 5.44 -19.87 -0.11 -2.76 16 9 C 0.06 2.03 4.93 85.56 0.42 2.46 16 10 N -0.48 -19.75 6.15 -911.59 -5.61 -25.35 16 11 C 0.01 0.53 7.50 86.41 0.65 1.18 16 12 C 0.02 1.01 3.60 -10.89 -0.04 0.97 16 13 C -0.53 -29.42 8.77 25.60 0.22 -29.19 16 14 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 15 C 0.02 0.84 5.46 84.66 0.46 1.31 16 16 N -0.92 -54.45 13.29 21.45 0.28 -54.17 16 17 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 21 C 0.03 1.43 7.53 86.34 0.65 2.08 16 22 C -0.11 -3.60 9.36 22.27 0.21 -3.39 16 23 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 1.50 8.09 -2.39 -0.02 1.49 16 27 H 0.05 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 29 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.04 1.42 7.33 -2.39 -0.02 1.41 16 32 H 0.09 2.75 8.02 -2.39 -0.02 2.73 16 33 H 0.06 2.56 7.88 -2.38 -0.02 2.54 16 34 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.04 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 2.27 7.43 -2.39 -0.02 2.26 16 39 H 0.10 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -64.46 329.63 0.81 -63.65 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.01 Total: 15.84 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 4.69 Total: -33.45 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -5.32 Total: -79.52 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.59 Total: -11.96 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -64.46 0.81 -63.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.803 kcal (2) G-P(sol) polarization free energy of solvation -64.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds