Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99510 * 2 1 4 4 H 1.48496 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47347 * 300.00176 * 3 2 1 6 6 H 1.48495 * 109.47261 * 60.00196 * 3 2 1 7 7 C 1.37877 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99765 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46799 * 180.02562 * 9 7 2 11 11 C 1.35346 * 126.75221 * 125.24518 * 10 9 7 12 12 N 1.35314 * 106.17574 * 180.12636 * 11 10 9 13 13 C 1.46497 * 125.87009 * 179.90650 * 12 11 10 14 14 C 1.53004 * 109.47053 * 124.71138 * 13 12 11 15 15 H 1.08997 * 109.75755 * 55.45334 * 14 13 12 16 16 C 1.53303 * 109.62057 * 295.00153 * 14 13 12 17 17 C 1.52876 * 108.57763 * 165.82605 * 16 14 13 18 18 C 1.52711 * 110.15387 * 54.52966 * 17 16 14 19 19 H 1.08994 * 115.39156 * 128.77760 * 18 17 16 20 20 C 1.53651 * 116.02889 * 269.79157 * 18 17 16 21 21 C 1.52072 * 120.52029 * 338.51767 * 18 17 16 22 22 H 1.09005 * 115.92565 * 150.00823 * 21 18 17 23 23 C 1.52073 * 120.01977 * 5.29776 * 21 18 17 24 24 N 1.28718 * 108.26002 * 359.63939 * 12 11 10 25 25 N 1.28627 * 110.17935 * 0.23254 * 24 12 11 26 26 H 0.97000 * 120.00714 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46906 * 60.00640 * 9 7 2 28 28 H 1.08994 * 109.47124 * 300.00017 * 9 7 2 29 29 H 1.08002 * 126.91409 * 0.02562 * 11 10 9 30 30 H 1.09007 * 109.47268 * 4.71334 * 13 12 11 31 31 H 1.08992 * 109.47634 * 244.71845 * 13 12 11 32 32 H 1.08998 * 109.61676 * 46.09868 * 16 14 13 33 33 H 1.09004 * 109.61684 * 285.55666 * 16 14 13 34 34 H 1.09000 * 109.35489 * 174.73451 * 17 16 14 35 35 H 1.08999 * 109.35668 * 294.45294 * 17 16 14 36 36 H 1.09002 * 117.53857 * 219.06631 * 20 18 17 37 37 H 1.09006 * 117.53867 * 4.30543 * 20 18 17 38 38 H 1.08997 * 109.26728 * 98.57006 * 23 21 18 39 39 H 1.09006 * 109.26106 * 218.07083 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.2812 -4.6667 0.8851 12 7 3.3148 -5.4497 0.4984 13 6 3.7550 -6.6796 1.1614 14 6 3.7698 -7.8272 0.1496 15 1 4.3917 -7.5579 -0.7040 16 6 2.3404 -8.1136 -0.3249 17 6 2.4086 -8.9964 -1.5712 18 6 3.2302 -10.2509 -1.2830 19 1 2.7525 -11.1938 -1.5489 20 6 4.7375 -10.1490 -1.5634 21 6 4.2264 -10.2747 -0.1342 22 1 4.3897 -11.2449 0.3351 23 6 4.3252 -9.0882 0.8118 24 7 3.8414 -4.9311 -0.5555 25 7 3.2177 -3.8535 -0.8788 26 1 -0.4851 0.8400 0.0004 27 1 0.6243 -2.5567 -0.8903 28 1 0.6249 -2.5570 0.8896 29 1 1.6290 -4.8248 1.7313 30 1 3.0689 -6.9202 1.9736 31 1 4.7579 -6.5368 1.5635 32 1 1.8406 -7.1758 -0.5676 33 1 1.7908 -8.6316 0.4610 34 1 1.3995 -9.2850 -1.8651 35 1 2.8760 -8.4395 -2.3833 36 1 5.2285 -11.0181 -2.0014 37 1 5.1276 -9.1803 -1.8758 38 1 3.7548 -9.3007 1.7160 39 1 5.3701 -8.9247 1.0758 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600977062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = 98.915394 kcal Electronic energy + Delta-G solvation = -19220.521312 eV Core-core repulsion = 16358.167207 eV Total energy + Delta-G solvation = -2862.354105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50149 -39.89798 -35.56040 -33.43479 -32.30898 -31.25913 -30.97568 -27.73663 -26.85917 -24.41051 -23.41170 -22.54919 -21.37357 -20.97152 -19.79414 -18.74486 -16.74850 -16.56522 -16.11422 -15.56882 -14.84636 -14.48354 -14.34352 -14.16266 -13.72583 -13.46032 -13.13696 -12.54470 -12.46886 -12.25026 -12.00559 -11.68564 -11.60938 -11.13700 -11.06159 -10.92022 -10.71213 -10.63373 -10.58860 -10.03269 -9.97560 -9.91664 -9.66360 -9.36996 -9.21938 -8.41215 -8.08513 -5.96911 -3.97162 2.28738 2.85553 3.36848 3.43511 3.47754 3.48703 3.56647 4.27732 4.31655 4.43014 4.53516 4.64081 4.70199 4.88097 4.94891 5.05080 5.17917 5.24923 5.28064 5.29393 5.39630 5.41806 5.55538 5.61795 5.65979 5.83863 5.86937 5.90540 5.98333 6.01454 6.10193 6.13133 6.20050 6.39862 7.17602 7.25176 7.56068 7.65540 8.01254 8.40295 9.06763 9.36969 9.65627 11.14272 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.048003 B = 0.003685 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.161698 B = 7596.938657 C = 7705.594071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.092 3.908 10 C 0.034 3.966 11 C -0.084 4.084 12 N -0.300 5.300 13 C 0.125 3.875 14 C -0.102 4.102 15 H 0.091 0.909 16 C -0.114 4.114 17 C -0.088 4.088 18 C -0.146 4.146 19 H 0.100 0.900 20 C -0.186 4.186 21 C -0.137 4.137 22 H 0.099 0.901 23 C -0.080 4.080 24 N -0.108 5.108 25 N -0.263 5.263 26 H 0.260 0.740 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.179 0.821 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.848 -22.318 3.198 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.104 4.104 11 C -0.233 4.233 12 N -0.095 5.095 13 C 0.003 3.997 14 C -0.121 4.121 15 H 0.109 0.891 16 C -0.152 4.152 17 C -0.125 4.125 18 C -0.165 4.165 19 H 0.118 0.882 20 C -0.223 4.223 21 C -0.155 4.155 22 H 0.117 0.883 23 C -0.118 4.118 24 N -0.086 5.086 25 N -0.130 5.130 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.197 0.803 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.818 -22.349 2.138 23.464 hybrid contribution -0.351 0.821 0.963 1.313 sum 6.467 -21.528 3.100 22.691 Atomic orbital electron populations 1.69955 1.05962 1.26618 1.51324 1.24976 0.94873 0.99225 0.95402 0.86464 0.80224 0.83483 0.77463 1.19710 1.20953 1.21121 1.21093 0.93292 0.89782 1.49847 0.92248 1.17720 0.90911 0.87634 0.98426 1.22999 0.97813 0.97631 0.91911 1.23349 0.97494 0.96314 1.06096 1.47122 1.22330 1.19422 1.20668 1.21949 1.02049 0.80638 0.95033 1.21536 0.98508 0.93314 0.98752 0.89108 1.21608 0.95672 0.99977 0.97917 1.21010 0.99598 0.94062 0.97870 1.22248 0.91507 0.99620 1.03083 0.88233 1.23184 0.97034 1.03213 0.98900 1.21748 1.03841 0.99515 0.90431 0.88327 1.20809 1.01342 0.92074 0.97557 1.78149 1.21768 1.07102 1.01621 1.75074 1.07014 1.07195 1.23758 0.93004 0.94370 0.94628 0.80343 0.88263 0.89043 0.91502 0.91527 0.91464 0.91391 0.89101 0.88501 0.91030 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.50 -14.63 9.09 -34.44 -0.31 -14.94 16 8 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 9 C 0.09 2.42 5.55 -29.03 -0.16 2.26 16 10 C 0.03 0.78 6.44 -82.78 -0.53 0.25 16 11 C -0.08 -1.53 11.49 -17.05 -0.20 -1.72 16 12 N -0.30 -4.92 2.72 -61.26 -0.17 -5.09 16 13 C 0.13 1.35 5.86 -4.04 -0.02 1.32 16 14 C -0.10 -1.01 1.98 -90.53 -0.18 -1.19 16 15 H 0.09 1.09 6.99 -51.93 -0.36 0.73 16 16 C -0.11 -1.21 5.24 -26.64 -0.14 -1.35 16 17 C -0.09 -0.88 5.83 -26.94 -0.16 -1.04 16 18 C -0.15 -1.26 6.19 -90.90 -0.56 -1.82 16 19 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.19 -1.57 9.66 -26.75 -0.26 -1.83 16 21 C -0.14 -1.07 6.00 -91.92 -0.55 -1.62 16 22 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 23 C -0.08 -0.60 5.22 -27.27 -0.14 -0.74 16 24 N -0.11 -2.19 12.84 60.35 0.77 -1.41 16 25 N -0.26 -6.33 12.40 33.29 0.41 -5.91 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.18 2.60 8.06 -52.49 -0.42 2.17 16 30 H 0.10 0.81 8.07 -51.92 -0.42 0.39 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.90 7.45 -51.93 -0.39 0.51 16 33 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.92 7.26 -51.93 -0.38 0.54 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -32.89 319.36 -7.92 -40.80 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -6.15 Total: -3.47 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -3.32 Total: -20.90 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 1.76 Total: -38.52 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.89 -7.92 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600977062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.717 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds