Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99510 * 2 1 4 4 H 1.48496 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47347 * 300.00176 * 3 2 1 6 6 H 1.48495 * 109.47261 * 60.00196 * 3 2 1 7 7 C 1.37877 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99765 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46799 * 180.02562 * 9 7 2 11 11 C 1.35346 * 126.75221 * 125.24518 * 10 9 7 12 12 N 1.35314 * 106.17574 * 180.12636 * 11 10 9 13 13 C 1.46497 * 125.87009 * 179.90650 * 12 11 10 14 14 C 1.53004 * 109.47053 * 124.71138 * 13 12 11 15 15 H 1.08997 * 109.75755 * 55.45334 * 14 13 12 16 16 C 1.53303 * 109.62057 * 295.00153 * 14 13 12 17 17 C 1.52876 * 108.57763 * 165.82605 * 16 14 13 18 18 C 1.52711 * 110.15387 * 54.52966 * 17 16 14 19 19 H 1.08994 * 115.39156 * 128.77760 * 18 17 16 20 20 C 1.53651 * 116.02889 * 269.79157 * 18 17 16 21 21 C 1.52072 * 120.52029 * 338.51767 * 18 17 16 22 22 H 1.09005 * 115.92565 * 150.00823 * 21 18 17 23 23 C 1.52073 * 120.01977 * 5.29776 * 21 18 17 24 24 N 1.28718 * 108.26002 * 359.63939 * 12 11 10 25 25 N 1.28627 * 110.17935 * 0.23254 * 24 12 11 26 26 H 0.97000 * 120.00714 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46906 * 60.00640 * 9 7 2 28 28 H 1.08994 * 109.47124 * 300.00017 * 9 7 2 29 29 H 1.08002 * 126.91409 * 0.02562 * 11 10 9 30 30 H 1.09007 * 109.47268 * 4.71334 * 13 12 11 31 31 H 1.08992 * 109.47634 * 244.71845 * 13 12 11 32 32 H 1.08998 * 109.61676 * 46.09868 * 16 14 13 33 33 H 1.09004 * 109.61684 * 285.55666 * 16 14 13 34 34 H 1.09000 * 109.35489 * 174.73451 * 17 16 14 35 35 H 1.08999 * 109.35668 * 294.45294 * 17 16 14 36 36 H 1.09002 * 117.53857 * 219.06631 * 20 18 17 37 37 H 1.09006 * 117.53867 * 4.30543 * 20 18 17 38 38 H 1.08997 * 109.26728 * 98.57006 * 23 21 18 39 39 H 1.09006 * 109.26106 * 218.07083 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.2812 -4.6667 0.8851 12 7 3.3148 -5.4497 0.4984 13 6 3.7550 -6.6796 1.1614 14 6 3.7698 -7.8272 0.1496 15 1 4.3917 -7.5579 -0.7040 16 6 2.3404 -8.1136 -0.3249 17 6 2.4086 -8.9964 -1.5712 18 6 3.2302 -10.2509 -1.2830 19 1 2.7525 -11.1938 -1.5489 20 6 4.7375 -10.1490 -1.5634 21 6 4.2264 -10.2747 -0.1342 22 1 4.3897 -11.2449 0.3351 23 6 4.3252 -9.0882 0.8118 24 7 3.8414 -4.9311 -0.5555 25 7 3.2177 -3.8535 -0.8788 26 1 -0.4851 0.8400 0.0004 27 1 0.6243 -2.5567 -0.8903 28 1 0.6249 -2.5570 0.8896 29 1 1.6290 -4.8248 1.7313 30 1 3.0689 -6.9202 1.9736 31 1 4.7579 -6.5368 1.5635 32 1 1.8406 -7.1758 -0.5676 33 1 1.7908 -8.6316 0.4610 34 1 1.3995 -9.2850 -1.8651 35 1 2.8760 -8.4395 -2.3833 36 1 5.2285 -11.0181 -2.0014 37 1 5.1276 -9.1803 -1.8758 38 1 3.7548 -9.3007 1.7160 39 1 5.3701 -8.9247 1.0758 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600977062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = 79.675375 kcal Electronic energy + Delta-G solvation = -19221.355622 eV Core-core repulsion = 16358.167207 eV Total energy + Delta-G solvation = -2863.188415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.02934 -40.62790 -36.67446 -35.39142 -33.59084 -32.79180 -32.03989 -29.46830 -28.05613 -25.47419 -25.18357 -23.56678 -22.55620 -22.04085 -21.16150 -19.48201 -18.50620 -17.90502 -17.47595 -16.68134 -16.51683 -15.63305 -15.59582 -15.17842 -14.71287 -14.50305 -14.42641 -14.18618 -13.68520 -13.56878 -13.22992 -12.93316 -12.84399 -12.65601 -12.50398 -12.28026 -11.96688 -11.89067 -11.75122 -11.62586 -11.45349 -11.30290 -10.75340 -10.65204 -10.58149 -10.53707 -9.82155 -8.18743 -6.27340 0.81706 1.39583 1.41251 1.54321 1.65017 1.80571 2.44682 2.82915 3.13889 3.43793 3.61329 3.65554 3.76502 3.92746 4.02164 4.16315 4.21706 4.25550 4.34475 4.42731 4.50835 4.53994 4.60605 4.64946 4.84870 4.86695 4.96191 5.00845 5.08267 5.17764 5.26503 5.29024 5.33969 5.37713 5.43173 5.48903 5.55784 5.77280 5.91004 6.23332 6.81254 7.39362 7.76643 8.92406 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.048003 B = 0.003685 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.161698 B = 7596.938657 C = 7705.594071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.523 4.523 8 H 0.043 0.957 9 C 0.102 3.898 10 C -0.010 4.010 11 C -0.053 4.053 12 N -0.278 5.278 13 C 0.111 3.889 14 C -0.095 4.095 15 H 0.063 0.937 16 C -0.112 4.112 17 C -0.089 4.089 18 C -0.152 4.152 19 H 0.111 0.889 20 C -0.196 4.196 21 C -0.126 4.126 22 H 0.119 0.881 23 C -0.076 4.076 24 N -0.118 5.118 25 N -0.313 5.313 26 H 0.266 0.734 27 H 0.006 0.994 28 H 0.034 0.966 29 H 0.222 0.778 30 H 0.139 0.861 31 H 0.112 0.888 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.610 -24.097 5.518 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.561 4.561 8 H 0.062 0.938 9 C 0.064 3.936 10 C -0.148 4.148 11 C -0.203 4.203 12 N -0.073 5.073 13 C -0.008 4.008 14 C -0.115 4.115 15 H 0.081 0.919 16 C -0.149 4.149 17 C -0.127 4.127 18 C -0.170 4.170 19 H 0.129 0.871 20 C -0.233 4.233 21 C -0.145 4.145 22 H 0.137 0.863 23 C -0.113 4.113 24 N -0.097 5.097 25 N -0.180 5.180 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.239 0.761 30 H 0.157 0.843 31 H 0.130 0.870 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.604 -24.161 4.454 25.718 hybrid contribution -0.585 1.241 0.241 1.393 sum 7.019 -22.920 4.695 24.426 Atomic orbital electron populations 1.70045 1.07246 1.27846 1.51608 1.25800 0.95806 1.02695 0.94746 0.85436 0.78569 0.79118 0.78127 1.19918 1.20242 1.19492 1.21310 0.92745 0.91597 1.50455 0.93834 1.17371 0.91130 0.88459 0.96662 1.22643 0.98644 0.99018 0.94515 1.23725 0.97125 0.94210 1.05279 1.47540 1.20731 1.19983 1.19073 1.22605 1.04258 0.78226 0.95736 1.21458 0.97668 0.94431 0.97916 0.91880 1.21585 0.96082 0.98572 0.98706 1.20975 0.99938 0.94698 0.97077 1.22235 0.91348 0.99069 1.04365 0.87080 1.23186 0.97027 1.02777 1.00309 1.21887 1.02064 1.00571 0.89928 0.86292 1.20840 1.02312 0.90198 0.97966 1.78024 1.21976 1.06518 1.03175 1.74979 1.08284 1.09185 1.25520 0.92492 0.97634 0.94812 0.76115 0.84281 0.86965 0.94928 0.89359 0.91175 0.93871 0.88007 0.90319 0.88520 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.96 46.18 29.54 68.60 2.03 48.21 16 4 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.52 -31.44 9.09 25.60 0.23 -31.21 16 8 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 9 C 0.10 5.64 5.55 29.10 0.16 5.80 16 10 C -0.01 -0.47 6.44 41.60 0.27 -0.20 16 11 C -0.05 -1.86 11.49 83.49 0.96 -0.90 16 12 N -0.28 -8.71 2.72 -347.73 -0.95 -9.66 16 13 C 0.11 2.01 5.86 86.38 0.51 2.51 16 14 C -0.10 -1.69 1.98 -10.73 -0.02 -1.71 16 15 H 0.06 1.50 6.99 -2.39 -0.02 1.48 16 16 C -0.11 -2.21 5.24 30.65 0.16 -2.05 16 17 C -0.09 -1.77 5.83 30.46 0.18 -1.59 16 18 C -0.15 -2.34 6.19 -10.98 -0.07 -2.41 16 19 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 20 C -0.20 -3.05 9.66 30.58 0.30 -2.75 16 21 C -0.13 -1.57 6.00 -11.64 -0.07 -1.64 16 22 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 23 C -0.08 -0.84 5.22 30.25 0.16 -0.68 16 24 N -0.12 -4.85 12.84 37.02 0.48 -4.38 16 25 N -0.31 -15.61 12.40 -48.60 -0.60 -16.21 16 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.03 1.81 8.12 -2.39 -0.02 1.79 16 29 H 0.22 5.64 8.06 -2.91 -0.02 5.61 16 30 H 0.14 1.51 8.07 -2.38 -0.02 1.49 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.03 0.86 7.45 -2.39 -0.02 0.84 16 33 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 1.04 8.05 -2.39 -0.02 1.02 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.51 7.26 -2.38 -0.02 1.49 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -74.96 319.36 5.48 -69.47 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.02 Total: 4.38 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 3.22 Total: -35.92 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -0.79 Total: -86.14 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.96 5.48 -69.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600977062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.150 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds