Wall clock time and date at job start Mon Mar 30 2020 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.35350 * 126.74854 * 125.00031 * 10 9 7 12 12 N 1.35310 * 106.17383 * 180.02562 * 11 10 9 13 13 C 1.46501 * 125.86896 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47330 * 125.00280 * 13 12 11 15 15 H 1.09002 * 109.61715 * 55.35991 * 14 13 12 16 16 C 1.53308 * 109.61791 * 295.00155 * 14 13 12 17 17 C 1.52870 * 108.58987 * 165.82661 * 16 14 13 18 18 C 1.52073 * 110.51488 * 54.89343 * 17 16 14 19 19 H 1.09001 * 114.63526 * 194.37025 * 18 17 16 20 20 C 1.52300 * 119.84231 * 49.54580 * 18 17 16 21 21 C 1.52066 * 120.01729 * 338.29444 * 18 17 16 22 22 H 1.09002 * 117.25296 * 216.66818 * 21 18 17 23 23 C 1.52711 * 120.52647 * 5.28935 * 21 18 17 24 24 N 1.28715 * 108.26730 * 0.02562 * 12 11 10 25 25 N 1.28641 * 110.17180 * 359.71951 * 24 12 11 26 26 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 29 29 H 1.08003 * 126.91705 * 0.03383 * 11 10 9 30 30 H 1.09000 * 109.47508 * 245.00048 * 13 12 11 31 31 H 1.09000 * 109.47093 * 4.99820 * 13 12 11 32 32 H 1.09001 * 109.61511 * 285.55817 * 16 14 13 33 33 H 1.08996 * 109.61279 * 46.09494 * 16 14 13 34 34 H 1.09007 * 109.26359 * 175.15695 * 17 16 14 35 35 H 1.08996 * 109.27031 * 294.62130 * 17 16 14 36 36 H 1.08999 * 117.53703 * 357.55764 * 20 18 17 37 37 H 1.09000 * 117.53982 * 142.72984 * 20 18 17 38 38 H 1.08992 * 109.35967 * 218.31685 * 23 21 18 39 39 H 1.09008 * 109.35137 * 98.73710 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.2839 -4.6643 0.8878 12 7 3.3148 -5.4496 0.4987 13 6 3.7556 -6.6790 1.1624 14 6 3.7716 -7.8271 0.1512 15 1 4.3929 -7.5546 -0.7020 16 6 2.3426 -8.1146 -0.3237 17 6 2.4116 -8.9980 -1.5695 18 6 3.2215 -10.2540 -1.2881 19 1 3.5232 -10.8086 -2.1766 20 6 2.9174 -11.0907 -0.0524 21 6 4.2170 -10.2756 -0.1387 22 1 5.1432 -10.8296 -0.2911 23 6 4.3275 -9.0874 0.8142 24 7 3.8423 -4.9304 -0.5544 25 7 3.2150 -3.8558 -0.8810 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 1.6343 -4.8201 1.7365 30 1 4.7583 -6.5353 1.5648 31 1 3.0694 -6.9196 1.9745 32 1 1.7931 -8.6327 0.4622 33 1 1.8423 -7.1773 -0.5669 34 1 1.4015 -9.2803 -1.8665 35 1 2.8817 -8.4409 -2.3799 36 1 2.1404 -10.7302 0.6216 37 1 2.9936 -12.1740 -0.1460 38 1 5.3742 -8.9279 1.0729 39 1 3.7613 -9.2981 1.7215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600977064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:37 Heat of formation + Delta-G solvation = 98.938566 kcal Electronic energy + Delta-G solvation = -19187.048608 eV Core-core repulsion = 16324.695507 eV Total energy + Delta-G solvation = -2862.353100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.49688 -39.90294 -35.59232 -33.43214 -32.28838 -31.25116 -30.97387 -27.70171 -26.82183 -24.64368 -23.40791 -22.31850 -21.50680 -20.97784 -19.77242 -18.65589 -16.74954 -16.62908 -16.17281 -15.72679 -14.69526 -14.46607 -14.21262 -14.14354 -13.94705 -13.49649 -12.96495 -12.62066 -12.43100 -12.22557 -12.08752 -11.67951 -11.55628 -11.14814 -11.09322 -10.95037 -10.69144 -10.64804 -10.60374 -10.06493 -10.00218 -9.88497 -9.65382 -9.38572 -9.22714 -8.40183 -8.08390 -5.96470 -3.96923 2.29067 2.85374 3.40348 3.42947 3.45918 3.46567 3.56288 4.19140 4.41306 4.48051 4.53554 4.61623 4.65769 4.87625 4.93363 5.02907 5.12459 5.24092 5.29213 5.37180 5.40173 5.45039 5.46842 5.52952 5.63934 5.82440 5.88882 5.96461 5.98422 5.99159 6.08210 6.13046 6.18171 6.40344 7.17812 7.25481 7.56048 7.65774 8.01327 8.40535 9.06361 9.37262 9.65720 11.14652 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.050682 B = 0.003639 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.330660 B = 7692.133976 C = 7856.529835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.093 3.907 10 C 0.034 3.966 11 C -0.084 4.084 12 N -0.300 5.300 13 C 0.125 3.875 14 C -0.099 4.099 15 H 0.093 0.907 16 C -0.117 4.117 17 C -0.088 4.088 18 C -0.137 4.137 19 H 0.097 0.903 20 C -0.183 4.183 21 C -0.148 4.148 22 H 0.102 0.898 23 C -0.081 4.081 24 N -0.107 5.107 25 N -0.264 5.264 26 H 0.262 0.738 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.179 0.821 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 -22.526 3.486 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.103 4.103 11 C -0.233 4.233 12 N -0.095 5.095 13 C 0.002 3.998 14 C -0.118 4.118 15 H 0.111 0.889 16 C -0.155 4.155 17 C -0.125 4.125 18 C -0.155 4.155 19 H 0.115 0.885 20 C -0.220 4.220 21 C -0.166 4.166 22 H 0.120 0.880 23 C -0.119 4.119 24 N -0.086 5.086 25 N -0.131 5.131 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.196 0.804 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.328 -22.558 2.431 23.555 hybrid contribution -0.340 0.817 0.994 1.331 sum 5.988 -21.741 3.425 22.809 Atomic orbital electron populations 1.69936 1.05963 1.26841 1.51140 1.24970 0.94872 0.99196 0.95365 0.86577 0.79493 0.82775 0.78725 1.20088 1.21331 1.20355 1.21017 0.93221 0.89816 1.50144 0.92358 1.17708 0.90897 0.87592 0.98410 1.22998 0.97911 0.97653 0.91782 1.23346 0.97704 0.96242 1.06012 1.47124 1.22379 1.19342 1.20681 1.21967 1.02015 0.80719 0.95058 1.21503 0.98389 0.93131 0.98772 0.88910 1.21647 0.95845 1.00106 0.97857 1.20815 0.99592 0.93970 0.98122 1.21837 1.01547 0.99064 0.93058 0.88490 1.23131 0.99449 0.97743 1.01649 1.22159 0.93990 0.99515 1.00925 0.87986 1.21009 1.01472 0.92179 0.97204 1.78159 1.21596 1.07162 1.01660 1.75078 1.06965 1.07322 1.23706 0.92886 0.94384 0.94646 0.80368 0.89034 0.88372 0.91765 0.91362 0.91421 0.91146 0.88678 0.89145 0.91064 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.50 -14.70 9.09 -34.44 -0.31 -15.02 16 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 9 C 0.09 2.45 5.55 -29.03 -0.16 2.29 16 10 C 0.03 0.79 6.44 -82.78 -0.53 0.25 16 11 C -0.08 -1.54 11.49 -17.05 -0.20 -1.74 16 12 N -0.30 -4.93 2.72 -61.26 -0.17 -5.09 16 13 C 0.12 1.34 5.86 -4.04 -0.02 1.32 16 14 C -0.10 -0.98 2.21 -90.53 -0.20 -1.18 16 15 H 0.09 1.13 7.92 -51.93 -0.41 0.71 16 16 C -0.12 -1.23 5.02 -26.64 -0.13 -1.37 16 17 C -0.09 -0.87 5.93 -27.27 -0.16 -1.03 16 18 C -0.14 -1.17 6.00 -91.92 -0.55 -1.72 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 20 C -0.18 -1.37 9.66 -26.75 -0.26 -1.62 16 21 C -0.15 -1.15 6.19 -90.91 -0.56 -1.72 16 22 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.08 -0.61 5.12 -26.95 -0.14 -0.75 16 24 N -0.11 -2.18 12.84 60.35 0.77 -1.40 16 25 N -0.26 -6.34 12.40 33.29 0.41 -5.93 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.93 8.12 -51.93 -0.42 0.50 16 29 H 0.18 2.60 8.06 -52.48 -0.42 2.18 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.06 0.59 7.11 -51.93 -0.37 0.23 16 33 H 0.07 0.92 7.45 -51.93 -0.39 0.53 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.71 7.26 -51.93 -0.38 0.34 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.46 8.06 -51.92 -0.42 0.04 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -32.84 319.36 -7.93 -40.77 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.15 Total: -3.56 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.33 Total: -20.74 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 1.76 Total: -38.57 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.84 -7.93 -40.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600977064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.706 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds