Wall clock time and date at job start Mon Mar 30 2020 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.35350 * 126.74854 * 125.00031 * 10 9 7 12 12 N 1.35310 * 106.17383 * 180.02562 * 11 10 9 13 13 C 1.46501 * 125.86896 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47330 * 125.00280 * 13 12 11 15 15 H 1.09002 * 109.61715 * 55.35991 * 14 13 12 16 16 C 1.53308 * 109.61791 * 295.00155 * 14 13 12 17 17 C 1.52870 * 108.58987 * 165.82661 * 16 14 13 18 18 C 1.52073 * 110.51488 * 54.89343 * 17 16 14 19 19 H 1.09001 * 114.63526 * 194.37025 * 18 17 16 20 20 C 1.52300 * 119.84231 * 49.54580 * 18 17 16 21 21 C 1.52066 * 120.01729 * 338.29444 * 18 17 16 22 22 H 1.09002 * 117.25296 * 216.66818 * 21 18 17 23 23 C 1.52711 * 120.52647 * 5.28935 * 21 18 17 24 24 N 1.28715 * 108.26730 * 0.02562 * 12 11 10 25 25 N 1.28641 * 110.17180 * 359.71951 * 24 12 11 26 26 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 29 29 H 1.08003 * 126.91705 * 0.03383 * 11 10 9 30 30 H 1.09000 * 109.47508 * 245.00048 * 13 12 11 31 31 H 1.09000 * 109.47093 * 4.99820 * 13 12 11 32 32 H 1.09001 * 109.61511 * 285.55817 * 16 14 13 33 33 H 1.08996 * 109.61279 * 46.09494 * 16 14 13 34 34 H 1.09007 * 109.26359 * 175.15695 * 17 16 14 35 35 H 1.08996 * 109.27031 * 294.62130 * 17 16 14 36 36 H 1.08999 * 117.53703 * 357.55764 * 20 18 17 37 37 H 1.09000 * 117.53982 * 142.72984 * 20 18 17 38 38 H 1.08992 * 109.35967 * 218.31685 * 23 21 18 39 39 H 1.09008 * 109.35137 * 98.73710 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.2839 -4.6643 0.8878 12 7 3.3148 -5.4496 0.4987 13 6 3.7556 -6.6790 1.1624 14 6 3.7716 -7.8271 0.1512 15 1 4.3929 -7.5546 -0.7020 16 6 2.3426 -8.1146 -0.3237 17 6 2.4116 -8.9980 -1.5695 18 6 3.2215 -10.2540 -1.2881 19 1 3.5232 -10.8086 -2.1766 20 6 2.9174 -11.0907 -0.0524 21 6 4.2170 -10.2756 -0.1387 22 1 5.1432 -10.8296 -0.2911 23 6 4.3275 -9.0874 0.8142 24 7 3.8423 -4.9304 -0.5544 25 7 3.2150 -3.8558 -0.8810 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 1.6343 -4.8201 1.7365 30 1 4.7583 -6.5353 1.5648 31 1 3.0694 -6.9196 1.9745 32 1 1.7931 -8.6327 0.4622 33 1 1.8423 -7.1773 -0.5669 34 1 1.4015 -9.2803 -1.8665 35 1 2.8817 -8.4409 -2.3799 36 1 2.1404 -10.7302 0.6216 37 1 2.9936 -12.1740 -0.1460 38 1 5.3742 -8.9279 1.0729 39 1 3.7613 -9.2981 1.7215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600977064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:37 Heat of formation + Delta-G solvation = 79.818983 kcal Electronic energy + Delta-G solvation = -19187.877695 eV Core-core repulsion = 16324.695507 eV Total energy + Delta-G solvation = -2863.182188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.02638 -40.61912 -36.69577 -35.39177 -33.57366 -32.78816 -32.02172 -29.45715 -28.00019 -25.46175 -25.39250 -23.42576 -22.50306 -22.07948 -21.14096 -19.41949 -18.50347 -17.90036 -17.46301 -16.92666 -16.53241 -15.62529 -15.49453 -14.94743 -14.83702 -14.67567 -14.29743 -14.13111 -13.71820 -13.50519 -13.28074 -12.93521 -12.83498 -12.64227 -12.49092 -12.20147 -11.99437 -11.92942 -11.74304 -11.64650 -11.46420 -11.30450 -10.74949 -10.64033 -10.57423 -10.53320 -9.82033 -8.18362 -6.27207 0.81865 1.40158 1.43942 1.51622 1.64710 1.80723 2.44848 2.84521 3.14236 3.39222 3.64468 3.73520 3.76941 3.94662 3.98880 4.12910 4.17672 4.30315 4.33430 4.42838 4.50958 4.58239 4.63758 4.66054 4.71368 4.91726 4.94245 4.98324 5.17234 5.18647 5.28872 5.30973 5.32102 5.35216 5.43473 5.48715 5.55845 5.77122 5.91019 6.23437 6.80970 7.39376 7.76822 8.92422 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.050682 B = 0.003639 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.330660 B = 7692.133976 C = 7856.529835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.044 0.956 9 C 0.103 3.897 10 C -0.009 4.009 11 C -0.054 4.054 12 N -0.278 5.278 13 C 0.110 3.890 14 C -0.091 4.091 15 H 0.065 0.935 16 C -0.114 4.114 17 C -0.087 4.087 18 C -0.153 4.153 19 H 0.098 0.902 20 C -0.171 4.171 21 C -0.149 4.149 22 H 0.111 0.889 23 C -0.075 4.075 24 N -0.117 5.117 25 N -0.313 5.313 26 H 0.266 0.734 27 H 0.005 0.995 28 H 0.033 0.967 29 H 0.222 0.778 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -24.184 5.725 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.062 0.938 9 C 0.064 3.936 10 C -0.148 4.148 11 C -0.204 4.204 12 N -0.073 5.073 13 C -0.009 4.009 14 C -0.111 4.111 15 H 0.084 0.916 16 C -0.152 4.152 17 C -0.125 4.125 18 C -0.171 4.171 19 H 0.116 0.884 20 C -0.208 4.208 21 C -0.167 4.167 22 H 0.129 0.871 23 C -0.112 4.112 24 N -0.096 5.096 25 N -0.180 5.180 26 H 0.075 0.925 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.238 0.762 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.243 -24.252 4.668 25.737 hybrid contribution -0.618 1.186 0.302 1.371 sum 6.625 -23.065 4.969 24.507 Atomic orbital electron populations 1.70033 1.07272 1.27987 1.51457 1.25800 0.95802 1.02690 0.94702 0.85555 0.78393 0.78555 0.78856 1.20157 1.20018 1.19271 1.21265 0.92779 0.91611 1.50698 0.93766 1.17361 0.91122 0.88441 0.96632 1.22635 0.98750 0.99024 0.94369 1.23716 0.97328 0.94161 1.05215 1.47537 1.20782 1.19884 1.19105 1.22617 1.04221 0.78318 0.95743 1.21419 0.97561 0.94180 0.97929 0.91617 1.21615 0.96232 0.98703 0.98624 1.20760 0.99767 0.94586 0.97376 1.21792 1.02540 0.98783 0.93967 0.88362 1.23192 0.99123 0.98248 1.00229 1.22270 0.94486 0.99798 1.00168 0.87070 1.21013 1.02446 0.90326 0.97461 1.78032 1.21776 1.06579 1.03189 1.74983 1.08221 1.09307 1.25444 0.92476 0.97656 0.94860 0.76191 0.86902 0.84505 0.89718 0.94749 0.91437 0.93366 0.88295 0.88027 0.89767 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 2 C 0.01 0.48 5.46 84.65 0.46 0.95 16 3 Si 0.96 46.10 29.54 68.60 2.03 48.12 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.53 -31.58 9.09 25.60 0.23 -31.34 16 8 H 0.04 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.10 5.68 5.55 29.10 0.16 5.84 16 10 C -0.01 -0.45 6.44 41.60 0.27 -0.18 16 11 C -0.05 -1.89 11.49 83.49 0.96 -0.93 16 12 N -0.28 -8.70 2.72 -347.73 -0.95 -9.64 16 13 C 0.11 2.00 5.86 86.38 0.51 2.51 16 14 C -0.09 -1.63 2.21 -10.73 -0.02 -1.65 16 15 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 16 C -0.11 -2.25 5.02 30.65 0.15 -2.10 16 17 C -0.09 -1.72 5.93 30.24 0.18 -1.54 16 18 C -0.15 -2.38 6.00 -11.64 -0.07 -2.45 16 19 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.17 -2.04 9.66 30.58 0.30 -1.74 16 21 C -0.15 -1.90 6.19 -10.98 -0.07 -1.97 16 22 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 23 C -0.07 -0.86 5.12 30.46 0.16 -0.70 16 24 N -0.12 -4.79 12.84 37.02 0.48 -4.31 16 25 N -0.31 -15.56 12.40 -48.60 -0.60 -16.16 16 26 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.03 1.79 8.12 -2.39 -0.02 1.77 16 29 H 0.22 5.65 8.06 -2.91 -0.02 5.63 16 30 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.14 1.52 8.07 -2.39 -0.02 1.51 16 32 H 0.08 1.32 7.11 -2.39 -0.02 1.30 16 33 H 0.03 0.91 7.45 -2.39 -0.02 0.89 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.12 7.26 -2.39 -0.02 1.10 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.72 8.06 -2.38 -0.02 0.70 16 Total: -1.00 -74.42 319.36 5.47 -68.95 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.02 Total: 4.36 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.21 Total: -35.31 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -0.79 Total: -86.12 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -74.42 5.47 -68.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600977064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.767 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds