Wall clock time and date at job start Mon Mar 30 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46905 * 2 1 4 4 C 1.52995 * 109.47408 * 239.99360 * 2 1 3 5 5 C 1.50697 * 109.46831 * 64.99848 * 4 2 1 6 6 H 1.08001 * 120.00151 * 0.02562 * 5 4 2 7 7 C 1.37887 * 119.99843 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99695 * 359.73037 * 7 5 4 9 9 Si 1.86796 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47356 * 179.72695 * 9 7 5 11 11 H 1.48506 * 109.47026 * 299.72585 * 9 7 5 12 12 H 1.48501 * 109.47132 * 59.72294 * 9 7 5 13 13 C 1.53006 * 109.46957 * 119.99423 * 2 1 3 14 14 N 1.46901 * 109.47100 * 296.16624 * 13 2 1 15 15 C 1.46758 * 111.00170 * 301.51266 * 14 13 2 16 16 C 1.53427 * 108.58142 * 184.93103 * 15 14 13 17 17 O 1.43142 * 107.89992 * 63.28908 * 16 15 14 18 18 C 1.36146 * 116.68534 * 314.75054 * 17 16 15 19 19 C 1.38784 * 118.75468 * 194.71443 * 18 17 16 20 20 C 1.38178 * 120.20899 * 180.22851 * 19 18 17 21 21 C 1.38252 * 120.02810 * 0.02562 * 20 19 18 22 22 C 1.38058 * 120.11956 * 359.86023 * 21 20 19 23 23 C 1.38970 * 121.38375 * 14.78507 * 18 17 16 24 24 H 1.09004 * 109.47463 * 174.81892 * 1 2 3 25 25 H 1.09009 * 109.47230 * 294.82166 * 1 2 3 26 26 H 1.08997 * 109.47394 * 54.82123 * 1 2 3 27 27 H 1.09003 * 109.46718 * 305.00210 * 4 2 1 28 28 H 1.09001 * 109.47532 * 185.00076 * 4 2 1 29 29 H 0.96999 * 120.00333 * 0.26944 * 8 7 5 30 30 H 1.08994 * 109.46888 * 56.16302 * 13 2 1 31 31 H 1.08996 * 109.47285 * 176.16396 * 13 2 1 32 32 H 1.09001 * 109.62026 * 304.66089 * 15 14 13 33 33 H 1.09004 * 109.61954 * 65.20564 * 15 14 13 34 34 H 1.09002 * 109.77682 * 182.88885 * 16 15 14 35 35 H 1.09001 * 109.77301 * 303.68768 * 16 15 14 36 36 H 1.07998 * 119.89316 * 0.22553 * 19 18 17 37 37 H 1.07997 * 119.98146 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.93850 * 179.89206 * 21 20 19 39 39 H 1.08004 * 119.88351 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 0.0568 -2.4765 6 1 1.0806 0.9743 -2.3757 7 6 1.9933 -0.4021 -3.7282 8 7 2.6815 -1.5160 -3.8506 9 14 1.4997 0.5629 -5.2496 10 1 2.0009 -0.1335 -6.4616 11 1 0.0195 0.6637 -5.3131 12 1 2.0863 1.9255 -5.1834 13 6 2.0399 -0.7212 1.2494 14 7 1.6273 0.0229 2.4469 15 6 2.1437 1.3963 2.4168 16 6 1.7876 2.0817 3.7424 17 8 2.4602 1.3816 4.7943 18 6 2.4047 0.0218 4.7567 19 6 2.7620 -0.6926 5.8917 20 6 2.7212 -2.0738 5.8853 21 6 2.3243 -2.7490 4.7461 22 6 1.9650 -2.0457 3.6137 23 6 2.0017 -0.6548 3.6117 24 1 -0.3634 -1.0235 -0.0928 25 1 -0.3634 0.4314 0.9328 26 1 -0.3634 0.5920 -0.8399 27 1 1.6053 -1.7199 -1.2949 28 1 3.1263 -0.7996 -1.2054 29 1 2.9382 -2.0169 -3.0605 30 1 1.6215 -1.7270 1.2845 31 1 3.1277 -0.7811 1.2157 32 1 3.2266 1.3775 2.2937 33 1 1.6881 1.9405 1.5895 34 1 2.1176 3.1203 3.7209 35 1 0.7101 2.0396 3.9016 36 1 3.0729 -0.1673 6.7826 37 1 2.9997 -2.6260 6.7707 38 1 2.2946 -3.8286 4.7422 39 1 1.6551 -2.5770 2.7260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:04 Heat of formation + Delta-G solvation = -18.047825 kcal Electronic energy + Delta-G solvation = -19683.049895 eV Core-core repulsion = 16783.331133 eV Total energy + Delta-G solvation = -2899.718762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04926 -37.52370 -37.37892 -34.60736 -32.18379 -30.86565 -30.35003 -28.18135 -26.51014 -25.25071 -24.28648 -23.09652 -21.77374 -20.29591 -19.24367 -18.07094 -17.05169 -16.56919 -16.54475 -15.12002 -14.87401 -14.70665 -14.22935 -14.09442 -13.72704 -13.68031 -13.47066 -13.20276 -12.79100 -11.96553 -11.83593 -11.80769 -11.66162 -11.36753 -11.11152 -10.99891 -10.75168 -10.61250 -10.46778 -10.13428 -9.85379 -9.73240 -9.54926 -8.54155 -8.48526 -8.34122 -7.51418 -6.36717 -4.05643 1.34913 1.41773 3.21809 3.42487 3.44110 3.60221 3.62928 3.94441 4.51966 4.54018 4.68765 4.95177 5.02223 5.08785 5.27476 5.31431 5.36747 5.41161 5.47571 5.58323 5.65184 5.68265 5.82578 5.93397 6.08952 6.11240 6.26211 6.30729 6.43156 6.53467 6.66423 6.77674 6.88473 6.98791 7.08237 7.10499 7.32543 7.45628 7.49826 8.19934 8.44864 8.87347 9.65925 11.03629 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.004470 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.148843 B = 6262.481868 C = 6796.476386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 H 0.060 0.940 4 C 0.015 3.985 5 C -0.595 4.595 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.060 3.940 14 N -0.483 5.483 15 C 0.012 3.988 16 C 0.059 3.941 17 O -0.319 6.319 18 C 0.080 3.920 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.128 4.128 23 C 0.056 3.944 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.008 0.992 28 H 0.004 0.996 29 H 0.268 0.732 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 2.656 17.781 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.097 4.097 3 H 0.078 0.922 4 C -0.022 4.022 5 C -0.634 4.634 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.064 4.064 14 N -0.198 5.198 15 C -0.115 4.115 16 C -0.016 4.016 17 O -0.233 6.233 18 C 0.033 3.967 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.043 4.043 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.510 2.881 16.165 16.489 hybrid contribution 0.482 -0.083 1.432 1.513 sum -1.028 2.798 17.597 17.847 Atomic orbital electron populations 1.21606 0.95263 1.01171 1.00156 1.21191 0.96319 0.99133 0.93082 0.92178 1.19246 0.95237 0.95661 0.92083 1.21987 1.38917 1.10292 0.92168 0.93217 1.25824 0.94628 0.97126 1.01380 1.70784 1.35710 1.15003 1.33508 0.83567 0.76073 0.75138 0.75675 1.20806 1.21451 1.21514 1.22597 0.98239 0.97889 0.87706 1.58808 1.56595 1.02804 1.01546 1.22850 0.99560 0.89637 0.99451 1.23171 0.97632 0.95968 0.84838 1.86187 1.72296 1.15434 1.49393 1.18663 1.01574 0.82500 0.93963 1.20396 1.04130 0.93769 0.96221 1.20798 1.01815 0.93110 0.98505 1.20903 1.00659 0.99790 0.92950 1.21015 1.02518 0.91725 0.99662 1.19057 1.00481 0.93451 0.91294 0.93841 0.93867 0.92463 0.97337 0.97750 0.92175 0.89986 0.94055 0.92497 0.87428 0.86947 0.90812 0.85461 0.85735 0.85895 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.86 37.16 0.33 -2.03 16 2 C -0.08 -1.55 2.06 -90.62 -0.19 -1.74 16 3 H 0.06 1.19 6.29 -51.93 -0.33 0.87 16 4 C 0.02 0.38 3.76 -27.89 -0.10 0.27 16 5 C -0.60 -16.51 8.47 -34.44 -0.29 -16.80 16 6 H 0.05 1.35 7.06 -52.49 -0.37 0.98 16 7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 8 N -0.91 -27.84 13.65 55.43 0.76 -27.08 16 9 Si 1.07 25.11 29.90 -169.99 -5.08 20.02 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 13 C 0.06 1.04 3.88 -3.82 -0.01 1.02 16 14 N -0.48 -7.53 4.01 -170.81 -0.68 -8.21 16 15 C 0.01 0.16 5.13 -3.68 -0.02 0.14 16 16 C 0.06 0.70 7.26 37.38 0.27 0.97 16 17 O -0.32 -4.49 10.40 -20.21 -0.21 -4.70 16 18 C 0.08 1.17 6.47 -39.11 -0.25 0.92 16 19 C -0.13 -1.58 9.94 -39.40 -0.39 -1.97 16 20 C -0.12 -1.39 10.04 -39.60 -0.40 -1.78 16 21 C -0.12 -1.49 10.03 -39.64 -0.40 -1.89 16 22 C -0.13 -1.81 9.06 -39.31 -0.36 -2.17 16 23 C 0.06 0.86 5.82 -83.59 -0.49 0.37 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.73 7.58 -51.92 -0.39 0.34 16 26 H 0.06 1.15 7.11 -51.93 -0.37 0.78 16 27 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 28 H 0.00 0.11 8.00 -51.93 -0.42 -0.30 16 29 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 30 H 0.08 1.39 5.96 -51.93 -0.31 1.08 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.11 1.45 6.50 -51.93 -0.34 1.11 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.13 1.81 5.96 -52.48 -0.31 1.49 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -30.99 310.09 -8.67 -39.66 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.72 Total: 0.01 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -2.40 Total: -24.38 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.07 Total: -35.30 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.21 Total: -4.70 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.99 -8.67 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.616 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds