Wall clock time and date at job start Mon Mar 30 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46905 * 2 1 4 4 C 1.52995 * 109.47408 * 239.99360 * 2 1 3 5 5 C 1.50697 * 109.46831 * 64.99848 * 4 2 1 6 6 H 1.08001 * 120.00151 * 0.02562 * 5 4 2 7 7 C 1.37887 * 119.99843 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99695 * 359.73037 * 7 5 4 9 9 Si 1.86796 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47356 * 179.72695 * 9 7 5 11 11 H 1.48506 * 109.47026 * 299.72585 * 9 7 5 12 12 H 1.48501 * 109.47132 * 59.72294 * 9 7 5 13 13 C 1.53006 * 109.46957 * 119.99423 * 2 1 3 14 14 N 1.46901 * 109.47100 * 296.16624 * 13 2 1 15 15 C 1.46758 * 111.00170 * 301.51266 * 14 13 2 16 16 C 1.53427 * 108.58142 * 184.93103 * 15 14 13 17 17 O 1.43142 * 107.89992 * 63.28908 * 16 15 14 18 18 C 1.36146 * 116.68534 * 314.75054 * 17 16 15 19 19 C 1.38784 * 118.75468 * 194.71443 * 18 17 16 20 20 C 1.38178 * 120.20899 * 180.22851 * 19 18 17 21 21 C 1.38252 * 120.02810 * 0.02562 * 20 19 18 22 22 C 1.38058 * 120.11956 * 359.86023 * 21 20 19 23 23 C 1.38970 * 121.38375 * 14.78507 * 18 17 16 24 24 H 1.09004 * 109.47463 * 174.81892 * 1 2 3 25 25 H 1.09009 * 109.47230 * 294.82166 * 1 2 3 26 26 H 1.08997 * 109.47394 * 54.82123 * 1 2 3 27 27 H 1.09003 * 109.46718 * 305.00210 * 4 2 1 28 28 H 1.09001 * 109.47532 * 185.00076 * 4 2 1 29 29 H 0.96999 * 120.00333 * 0.26944 * 8 7 5 30 30 H 1.08994 * 109.46888 * 56.16302 * 13 2 1 31 31 H 1.08996 * 109.47285 * 176.16396 * 13 2 1 32 32 H 1.09001 * 109.62026 * 304.66089 * 15 14 13 33 33 H 1.09004 * 109.61954 * 65.20564 * 15 14 13 34 34 H 1.09002 * 109.77682 * 182.88885 * 16 15 14 35 35 H 1.09001 * 109.77301 * 303.68768 * 16 15 14 36 36 H 1.07998 * 119.89316 * 0.22553 * 19 18 17 37 37 H 1.07997 * 119.98146 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.93850 * 179.89206 * 21 20 19 39 39 H 1.08004 * 119.88351 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 0.0568 -2.4765 6 1 1.0806 0.9743 -2.3757 7 6 1.9933 -0.4021 -3.7282 8 7 2.6815 -1.5160 -3.8506 9 14 1.4997 0.5629 -5.2496 10 1 2.0009 -0.1335 -6.4616 11 1 0.0195 0.6637 -5.3131 12 1 2.0863 1.9255 -5.1834 13 6 2.0399 -0.7212 1.2494 14 7 1.6273 0.0229 2.4469 15 6 2.1437 1.3963 2.4168 16 6 1.7876 2.0817 3.7424 17 8 2.4602 1.3816 4.7943 18 6 2.4047 0.0218 4.7567 19 6 2.7620 -0.6926 5.8917 20 6 2.7212 -2.0738 5.8853 21 6 2.3243 -2.7490 4.7461 22 6 1.9650 -2.0457 3.6137 23 6 2.0017 -0.6548 3.6117 24 1 -0.3634 -1.0235 -0.0928 25 1 -0.3634 0.4314 0.9328 26 1 -0.3634 0.5920 -0.8399 27 1 1.6053 -1.7199 -1.2949 28 1 3.1263 -0.7996 -1.2054 29 1 2.9382 -2.0169 -3.0605 30 1 1.6215 -1.7270 1.2845 31 1 3.1277 -0.7811 1.2157 32 1 3.2266 1.3775 2.2937 33 1 1.6881 1.9405 1.5895 34 1 2.1176 3.1203 3.7209 35 1 0.7101 2.0396 3.9016 36 1 3.0729 -0.1673 6.7826 37 1 2.9997 -2.6260 6.7707 38 1 2.2946 -3.8286 4.7422 39 1 1.6551 -2.5770 2.7260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618888444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:04 Heat of formation + Delta-G solvation = -35.901697 kcal Electronic energy + Delta-G solvation = -19683.824097 eV Core-core repulsion = 16783.331133 eV Total energy + Delta-G solvation = -2900.492964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.11616 -38.79002 -38.42925 -36.31434 -34.11452 -31.86279 -31.35096 -29.52915 -28.35420 -26.64619 -25.34766 -24.86569 -23.05738 -21.42303 -20.70365 -19.23628 -18.84080 -17.84908 -17.62680 -16.32871 -16.15795 -15.88301 -15.62437 -15.54749 -15.21866 -14.94632 -14.74970 -14.59108 -13.97142 -13.62519 -13.52687 -13.07762 -12.95423 -12.78345 -12.57125 -12.47778 -12.10729 -11.97780 -11.95725 -11.68521 -11.54250 -11.33626 -10.94178 -10.58789 -10.53213 -9.49847 -8.66381 -8.62452 -6.35960 0.33409 0.41440 1.52548 1.60710 1.79510 2.21708 2.53290 2.58898 2.88842 3.17913 3.48702 3.61626 3.85355 3.97007 4.07360 4.14772 4.23317 4.24954 4.31403 4.37909 4.49369 4.55562 4.64263 4.69476 4.71633 4.78096 4.91546 5.01076 5.11512 5.25085 5.27717 5.28776 5.38453 5.54984 5.58175 5.69119 5.86460 5.98579 6.04256 6.20659 6.41646 6.59810 7.45105 8.74342 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.004470 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.148843 B = 6262.481868 C = 6796.476386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 H 0.061 0.939 4 C 0.018 3.982 5 C -0.604 4.604 6 H 0.054 0.946 7 C -0.041 4.041 8 N -0.941 5.941 9 Si 1.115 2.885 10 H -0.286 1.286 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.075 3.925 14 N -0.485 5.485 15 C 0.008 3.992 16 C 0.063 3.937 17 O -0.328 6.328 18 C 0.063 3.937 19 C -0.131 4.131 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.145 4.145 23 C 0.029 3.971 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.043 0.957 27 H -0.011 1.011 28 H -0.018 1.018 29 H 0.254 0.746 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 3.537 19.388 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.020 4.020 5 C -0.642 4.642 6 H 0.073 0.927 7 C -0.238 4.238 8 N -0.579 5.579 9 Si 0.936 3.064 10 H -0.212 1.212 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.051 4.051 14 N -0.200 5.200 15 C -0.119 4.119 16 C -0.012 4.012 17 O -0.242 6.242 18 C 0.016 3.984 19 C -0.150 4.150 20 C -0.131 4.131 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.070 4.070 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.007 0.993 28 H 0.000 1.000 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.162 0.838 35 H 0.096 0.904 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.166 0.834 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.099 3.767 17.815 18.330 hybrid contribution 0.702 -0.411 1.046 1.325 sum -1.397 3.356 18.861 19.208 Atomic orbital electron populations 1.21495 0.94190 1.00683 1.00770 1.20987 0.97012 0.98658 0.92014 0.92039 1.19167 0.93723 0.95017 0.94053 1.22394 1.38199 1.10446 0.93195 0.92726 1.27377 0.93992 0.97234 1.05179 1.70920 1.37786 1.16386 1.32822 0.82959 0.76972 0.74564 0.71860 1.21185 1.19368 1.19414 1.22269 0.97150 0.97843 0.87799 1.58818 1.56973 1.03264 1.00944 1.22931 0.98842 0.89109 1.00974 1.23345 0.97915 0.96955 0.82997 1.86167 1.72702 1.15347 1.50025 1.18966 1.02069 0.82893 0.94442 1.20776 1.03468 0.94518 0.96281 1.21236 0.99802 0.92817 0.99274 1.21248 0.99628 1.01125 0.92410 1.21165 1.03248 0.91645 1.00495 1.19213 1.02336 0.94045 0.91367 0.94497 0.91519 0.93764 0.99289 1.00008 0.93698 0.90034 0.95478 0.93680 0.87240 0.83824 0.90394 0.83522 0.82243 0.83443 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.28 8.86 71.98 0.64 -3.65 16 2 C -0.07 -2.73 2.06 -10.79 -0.02 -2.75 16 3 H 0.06 2.45 6.29 -2.39 -0.02 2.44 16 4 C 0.02 0.92 3.76 29.85 0.11 1.04 16 5 C -0.60 -33.94 8.47 25.60 0.22 -33.72 16 6 H 0.05 2.96 7.06 -2.91 -0.02 2.94 16 7 C -0.04 -2.36 5.46 84.66 0.46 -1.90 16 8 N -0.94 -58.76 13.65 21.45 0.29 -58.47 16 9 Si 1.12 50.13 29.90 68.60 2.05 52.18 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.07 2.64 3.88 86.31 0.33 2.98 16 14 N -0.48 -15.03 4.01 -694.32 -2.78 -17.81 16 15 C 0.01 0.22 5.13 86.47 0.44 0.66 16 16 C 0.06 1.38 7.26 72.13 0.52 1.90 16 17 O -0.33 -8.74 10.40 -95.22 -0.99 -9.73 16 18 C 0.06 1.77 6.47 22.58 0.15 1.92 16 19 C -0.13 -2.99 9.94 22.39 0.22 -2.77 16 20 C -0.11 -2.19 10.04 22.26 0.22 -1.97 16 21 C -0.13 -2.75 10.03 22.23 0.22 -2.53 16 22 C -0.14 -4.01 9.06 22.44 0.20 -3.81 16 23 C 0.03 0.86 5.82 38.25 0.22 1.08 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 2.18 7.58 -2.38 -0.02 2.16 16 26 H 0.04 1.75 7.11 -2.39 -0.02 1.73 16 27 H -0.01 -0.62 8.01 -2.39 -0.02 -0.63 16 28 H -0.02 -1.02 8.00 -2.39 -0.02 -1.04 16 29 H 0.25 16.07 7.22 -92.71 -0.67 15.40 16 30 H 0.08 2.85 5.96 -2.39 -0.01 2.84 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 1.31 8.13 -2.39 -0.02 1.29 16 33 H 0.11 2.87 6.50 -2.38 -0.02 2.85 16 34 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.12 3.49 5.96 -2.91 -0.02 3.47 16 Total: -1.00 -67.52 310.09 3.65 -63.87 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.13 Total: 13.49 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 3.95 Total: -43.52 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -2.49 Total: -76.28 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.99 Total: -9.73 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Total: -67.52 3.65 -63.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.967 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds