Wall clock time and date at job start Mon Mar 30 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 C 1.53003 * 109.46945 * 119.99764 * 2 1 3 5 5 C 1.50694 * 109.47381 * 295.00156 * 4 2 1 6 6 H 1.08002 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00029 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00165 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47269 * 89.99637 * 9 7 5 11 11 H 1.48502 * 109.47225 * 209.99618 * 9 7 5 12 12 H 1.48501 * 109.47240 * 329.99244 * 9 7 5 13 13 C 1.53000 * 109.47191 * 240.00188 * 2 1 3 14 14 N 1.46896 * 109.47246 * 63.68434 * 13 2 1 15 15 C 1.46760 * 110.99787 * 58.49793 * 14 13 2 16 16 C 1.53421 * 108.60187 * 174.99628 * 15 14 13 17 17 O 1.43157 * 107.87719 * 296.70714 * 16 15 14 18 18 C 1.36151 * 116.66639 * 45.36746 * 17 16 15 19 19 C 1.38778 * 118.74775 * 165.19925 * 18 17 16 20 20 C 1.38173 * 120.20717 * 179.70155 * 19 18 17 21 21 C 1.38254 * 120.02920 * 0.02562 * 20 19 18 22 22 C 1.38075 * 120.11623 * 0.06470 * 21 20 19 23 23 C 1.38965 * 121.37886 * 345.06984 * 18 17 16 24 24 H 1.09002 * 109.47332 * 305.18272 * 1 2 3 25 25 H 1.08998 * 109.47064 * 65.18746 * 1 2 3 26 26 H 1.09002 * 109.46925 * 185.18466 * 1 2 3 27 27 H 1.09001 * 109.47061 * 55.00376 * 4 2 1 28 28 H 1.09000 * 109.46952 * 175.00092 * 4 2 1 29 29 H 0.96993 * 119.99903 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.46832 * 303.68840 * 13 2 1 31 31 H 1.08992 * 109.46918 * 183.69055 * 13 2 1 32 32 H 1.08996 * 109.61756 * 294.73301 * 15 14 13 33 33 H 1.09002 * 109.61347 * 55.26417 * 15 14 13 34 34 H 1.09003 * 109.77727 * 56.32912 * 16 15 14 35 35 H 1.08995 * 109.78015 * 177.13365 * 16 15 14 36 36 H 1.08003 * 119.89246 * 359.71923 * 19 18 17 37 37 H 1.07995 * 119.98543 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.94584 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.87571 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6764 -1.5188 3.8512 9 14 1.4984 0.5627 5.2496 10 1 0.1714 0.0935 5.7233 11 1 2.5079 0.3533 6.3185 12 1 1.4225 2.0079 4.9167 13 6 2.0401 -0.7212 -1.2493 14 7 1.6244 0.0208 -2.4470 15 6 2.1381 1.3952 -2.4188 16 6 1.7809 2.0785 -3.7452 17 8 2.4552 1.3781 -4.7959 18 6 2.3998 0.0183 -4.7575 19 6 2.7569 -0.6966 -5.8921 20 6 2.7177 -2.0778 -5.8846 21 6 2.3214 -2.7524 -4.7447 22 6 1.9627 -2.0484 -3.6124 23 6 1.9982 -0.6575 -3.6116 24 1 -0.3634 0.5921 0.8399 25 1 -0.3633 0.4313 -0.9328 26 1 -0.3633 -1.0235 0.0929 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 2.9236 -1.8416 4.7317 30 1 1.6237 -1.7281 -1.2829 31 1 3.1280 -0.7788 -1.2168 32 1 1.6817 1.9396 -1.5922 33 1 3.2211 1.3786 -2.2958 34 1 0.7034 2.0346 -3.9042 35 1 2.1093 3.1176 -3.7250 36 1 3.0667 -0.1717 -6.7837 37 1 2.9960 -2.6305 -6.7696 38 1 2.2916 -3.8320 -4.7402 39 1 1.6541 -2.5794 -2.7240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:06 Heat of formation + Delta-G solvation = -14.360194 kcal Electronic energy + Delta-G solvation = -19645.324560 eV Core-core repulsion = 16745.765706 eV Total energy + Delta-G solvation = -2899.558854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99068 -37.45913 -37.29957 -34.38699 -32.09489 -30.81325 -30.29841 -28.22229 -26.78640 -25.24497 -24.23663 -23.14071 -21.66601 -20.21068 -19.05975 -17.96499 -16.87497 -16.53420 -16.27381 -15.06418 -14.83680 -14.65292 -14.41087 -14.11534 -13.91785 -13.62064 -13.37022 -12.87114 -12.48524 -12.24386 -11.84495 -11.64356 -11.50828 -11.35611 -10.97859 -10.89383 -10.87385 -10.60055 -10.43302 -10.32388 -9.77499 -9.66703 -9.26318 -9.02050 -8.43629 -8.37847 -7.45313 -6.02516 -4.04294 1.40271 1.46820 3.26919 3.29833 3.36488 3.39017 3.66168 4.00408 4.43742 4.58337 4.74587 5.00249 5.07480 5.13905 5.32507 5.33487 5.37517 5.44760 5.54191 5.66781 5.71799 5.75667 5.90251 6.02216 6.16077 6.19111 6.33189 6.40822 6.52939 6.58804 6.72262 6.88650 6.98188 7.06933 7.17260 7.19994 7.51789 7.61468 7.75641 7.96303 8.39306 9.01587 9.59583 11.08969 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033211 B = 0.004451 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.891007 B = 6289.367265 C = 6823.445141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 H 0.058 0.942 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.484 5.484 15 C 0.012 3.988 16 C 0.059 3.941 17 O -0.319 6.319 18 C 0.079 3.921 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.128 4.128 23 C 0.057 3.943 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 2.270 -17.406 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.009 4.009 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.198 5.198 15 C -0.115 4.115 16 C -0.016 4.016 17 O -0.234 6.234 18 C 0.032 3.968 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.042 4.042 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.277 2.367 -17.313 17.521 hybrid contribution 0.359 0.364 1.210 1.313 sum -0.918 2.731 -16.104 16.359 Atomic orbital electron populations 1.21618 0.95491 1.01183 0.99990 1.21333 0.96173 0.99205 0.93718 0.92338 1.19119 0.96028 0.95611 0.90161 1.21185 1.34815 1.08377 0.90896 0.92577 1.25012 0.95228 0.95087 0.99110 1.69960 1.38883 1.21201 1.23473 0.86625 0.78267 0.80389 0.82907 1.20676 1.21275 1.19914 1.22595 0.98309 0.97907 0.87540 1.58815 1.56594 1.02786 1.01618 1.22843 0.99604 0.89667 0.99355 1.23171 0.97571 0.95956 0.84948 1.86190 1.72226 1.15450 1.49498 1.18660 1.01663 0.82489 0.93979 1.20385 1.04190 0.93759 0.96222 1.20787 1.01928 0.93112 0.98500 1.20906 1.00668 0.99774 0.92958 1.21031 1.02461 0.91732 0.99664 1.19062 1.00357 0.93455 0.91295 0.92605 0.94023 0.93742 0.96405 0.96793 0.93020 0.89934 0.93951 0.87410 0.92477 0.90856 0.87018 0.85532 0.85805 0.85922 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.86 37.16 0.33 -2.01 16 2 C -0.09 -1.68 2.06 -90.62 -0.19 -1.86 16 3 H 0.06 1.14 6.30 -51.93 -0.33 0.81 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.06 8.47 -34.45 -0.29 -14.36 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 C 0.06 1.05 3.88 -3.83 -0.01 1.03 16 14 N -0.48 -7.53 4.00 -170.82 -0.68 -8.21 16 15 C 0.01 0.17 5.13 -3.68 -0.02 0.15 16 16 C 0.06 0.70 7.26 37.38 0.27 0.97 16 17 O -0.32 -4.51 10.40 -20.22 -0.21 -4.72 16 18 C 0.08 1.16 6.47 -39.11 -0.25 0.91 16 19 C -0.13 -1.60 9.94 -39.41 -0.39 -1.99 16 20 C -0.12 -1.41 10.04 -39.60 -0.40 -1.81 16 21 C -0.12 -1.50 10.03 -39.64 -0.40 -1.90 16 22 C -0.13 -1.82 9.06 -39.31 -0.36 -2.17 16 23 C 0.06 0.88 5.82 -83.59 -0.49 0.39 16 24 H 0.05 1.10 7.11 -51.93 -0.37 0.73 16 25 H 0.04 0.70 7.57 -51.93 -0.39 0.30 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.08 1.40 5.96 -51.93 -0.31 1.09 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.44 6.50 -51.93 -0.34 1.10 16 33 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.83 5.96 -52.49 -0.31 1.52 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -30.23 311.40 -8.68 -38.91 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.78 Total: -0.63 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -2.42 Total: -20.57 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.05 Total: -34.03 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.21 Total: -4.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.23 -8.68 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.551 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds