Wall clock time and date at job start Mon Mar 30 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 C 1.53003 * 109.46945 * 119.99764 * 2 1 3 5 5 C 1.50694 * 109.47381 * 295.00156 * 4 2 1 6 6 H 1.08002 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00029 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00165 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47269 * 89.99637 * 9 7 5 11 11 H 1.48502 * 109.47225 * 209.99618 * 9 7 5 12 12 H 1.48501 * 109.47240 * 329.99244 * 9 7 5 13 13 C 1.53000 * 109.47191 * 240.00188 * 2 1 3 14 14 N 1.46896 * 109.47246 * 63.68434 * 13 2 1 15 15 C 1.46760 * 110.99787 * 58.49793 * 14 13 2 16 16 C 1.53421 * 108.60187 * 174.99628 * 15 14 13 17 17 O 1.43157 * 107.87719 * 296.70714 * 16 15 14 18 18 C 1.36151 * 116.66639 * 45.36746 * 17 16 15 19 19 C 1.38778 * 118.74775 * 165.19925 * 18 17 16 20 20 C 1.38173 * 120.20717 * 179.70155 * 19 18 17 21 21 C 1.38254 * 120.02920 * 0.02562 * 20 19 18 22 22 C 1.38075 * 120.11623 * 0.06470 * 21 20 19 23 23 C 1.38965 * 121.37886 * 345.06984 * 18 17 16 24 24 H 1.09002 * 109.47332 * 305.18272 * 1 2 3 25 25 H 1.08998 * 109.47064 * 65.18746 * 1 2 3 26 26 H 1.09002 * 109.46925 * 185.18466 * 1 2 3 27 27 H 1.09001 * 109.47061 * 55.00376 * 4 2 1 28 28 H 1.09000 * 109.46952 * 175.00092 * 4 2 1 29 29 H 0.96993 * 119.99903 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.46832 * 303.68840 * 13 2 1 31 31 H 1.08992 * 109.46918 * 183.69055 * 13 2 1 32 32 H 1.08996 * 109.61756 * 294.73301 * 15 14 13 33 33 H 1.09002 * 109.61347 * 55.26417 * 15 14 13 34 34 H 1.09003 * 109.77727 * 56.32912 * 16 15 14 35 35 H 1.08995 * 109.78015 * 177.13365 * 16 15 14 36 36 H 1.08003 * 119.89246 * 359.71923 * 19 18 17 37 37 H 1.07995 * 119.98543 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.94584 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.87571 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6764 -1.5188 3.8512 9 14 1.4984 0.5627 5.2496 10 1 0.1714 0.0935 5.7233 11 1 2.5079 0.3533 6.3185 12 1 1.4225 2.0079 4.9167 13 6 2.0401 -0.7212 -1.2493 14 7 1.6244 0.0208 -2.4470 15 6 2.1381 1.3952 -2.4188 16 6 1.7809 2.0785 -3.7452 17 8 2.4552 1.3781 -4.7959 18 6 2.3998 0.0183 -4.7575 19 6 2.7569 -0.6966 -5.8921 20 6 2.7177 -2.0778 -5.8846 21 6 2.3214 -2.7524 -4.7447 22 6 1.9627 -2.0484 -3.6124 23 6 1.9982 -0.6575 -3.6116 24 1 -0.3634 0.5921 0.8399 25 1 -0.3633 0.4313 -0.9328 26 1 -0.3633 -1.0235 0.0929 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 2.9236 -1.8416 4.7317 30 1 1.6237 -1.7281 -1.2829 31 1 3.1280 -0.7788 -1.2168 32 1 1.6817 1.9396 -1.5922 33 1 3.2211 1.3786 -2.2958 34 1 0.7034 2.0346 -3.9042 35 1 2.1093 3.1176 -3.7250 36 1 3.0667 -0.1717 -6.7837 37 1 2.9960 -2.6305 -6.7696 38 1 2.2916 -3.8320 -4.7402 39 1 1.6541 -2.5794 -2.7240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618888460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:06 Heat of formation + Delta-G solvation = -31.511374 kcal Electronic energy + Delta-G solvation = -19646.068291 eV Core-core repulsion = 16745.765706 eV Total energy + Delta-G solvation = -2900.302585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.05904 -38.68220 -38.37830 -36.04919 -34.05061 -31.81252 -31.30635 -29.67227 -28.52457 -26.63662 -25.30122 -24.80962 -22.94004 -21.31183 -20.53969 -19.07112 -18.54953 -17.82168 -17.53675 -16.55220 -16.18088 -16.05727 -15.69688 -15.24846 -15.08181 -14.85157 -14.57933 -14.35925 -14.03343 -13.74701 -13.31250 -13.04225 -12.77383 -12.74892 -12.62349 -12.48725 -12.26878 -12.11470 -11.91673 -11.59936 -11.46095 -11.11596 -11.09734 -10.76060 -10.54421 -9.45329 -8.56936 -8.18508 -6.27857 0.38137 0.45752 1.40598 1.41128 1.51873 2.26712 2.41281 2.61122 2.94069 3.15523 3.54808 3.68286 3.93653 4.04332 4.16251 4.21056 4.30017 4.35509 4.38217 4.44602 4.54334 4.63682 4.72120 4.78776 4.80758 4.91669 4.96972 5.14773 5.23903 5.33456 5.39346 5.44759 5.50608 5.61458 5.73812 5.75656 5.85015 5.93212 6.05637 6.27096 6.46420 6.87707 7.40805 8.93632 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033211 B = 0.004451 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.891007 B = 6289.367265 C = 6823.445141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.075 3.925 14 N -0.485 5.485 15 C 0.008 3.992 16 C 0.062 3.938 17 O -0.328 6.328 18 C 0.063 3.937 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.145 4.145 23 C 0.030 3.970 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.036 0.964 27 H -0.008 1.008 28 H -0.014 1.014 29 H 0.262 0.738 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.147 0.853 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 3.148 -18.847 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.186 1.186 13 C -0.050 4.050 14 N -0.200 5.200 15 C -0.118 4.118 16 C -0.013 4.013 17 O -0.243 6.243 18 C 0.016 3.984 19 C -0.151 4.151 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.165 4.165 23 C -0.068 4.068 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.011 0.989 28 H 0.004 0.996 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.129 0.871 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.846 3.255 -18.779 19.148 hybrid contribution 0.578 0.029 1.563 1.667 sum -1.268 3.284 -17.216 17.573 Atomic orbital electron populations 1.21506 0.94339 1.00714 1.00671 1.21104 0.96924 0.98782 0.92453 0.91982 1.18994 0.94118 0.94803 0.92449 1.21598 1.34475 1.08668 0.91874 0.91886 1.25930 0.95191 0.96062 1.02619 1.70099 1.40224 1.22969 1.24296 0.85518 0.77957 0.79355 0.78662 1.19933 1.21072 1.18638 1.22271 0.97175 0.97850 0.87736 1.58820 1.56955 1.03266 1.00989 1.22928 0.98912 0.89106 1.00892 1.23348 0.97847 0.96951 0.83123 1.86170 1.72639 1.15350 1.50156 1.18959 1.02149 0.82892 0.94447 1.20762 1.03546 0.94503 0.96293 1.21220 0.99947 0.92829 0.99263 1.21248 0.99658 1.01098 0.92429 1.21180 1.03200 0.91676 1.00481 1.19218 1.02163 0.94036 0.91391 0.93662 0.91739 0.94453 0.98932 0.99606 0.92942 0.90094 0.95454 0.87101 0.93643 0.90439 0.83890 0.83612 0.82339 0.83494 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.86 71.98 0.64 -3.62 16 2 C -0.07 -2.95 2.06 -10.79 -0.02 -2.97 16 3 H 0.06 2.43 6.30 -2.39 -0.02 2.42 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -29.30 8.47 25.60 0.22 -29.08 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 8 N -0.94 -56.74 13.29 21.45 0.28 -56.46 16 9 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 13 C 0.08 2.66 3.88 86.30 0.33 2.99 16 14 N -0.49 -15.06 4.00 -694.36 -2.78 -17.84 16 15 C 0.01 0.22 5.13 86.47 0.44 0.66 16 16 C 0.06 1.37 7.26 72.12 0.52 1.90 16 17 O -0.33 -8.81 10.40 -95.27 -0.99 -9.81 16 18 C 0.06 1.76 6.47 22.57 0.15 1.91 16 19 C -0.13 -3.05 9.94 22.38 0.22 -2.82 16 20 C -0.11 -2.25 10.04 22.26 0.22 -2.03 16 21 C -0.13 -2.79 10.03 22.23 0.22 -2.57 16 22 C -0.14 -4.05 9.06 22.45 0.20 -3.84 16 23 C 0.03 0.91 5.82 38.25 0.22 1.14 16 24 H 0.04 1.75 7.11 -2.39 -0.02 1.73 16 25 H 0.06 2.09 7.57 -2.39 -0.02 2.07 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.08 2.86 5.96 -2.38 -0.01 2.84 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 2.87 6.50 -2.39 -0.02 2.85 16 33 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.13 3.55 5.96 -2.91 -0.02 3.54 16 Total: -1.00 -65.68 311.40 3.54 -62.15 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.03 Total: 12.05 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.97 Total: -36.04 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.49 Total: -74.29 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.99 Total: -9.81 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -65.68 3.54 -62.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.636 kcal (2) G-P(sol) polarization free energy of solvation -65.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds