Wall clock time and date at job start Mon Mar 30 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20758 * 119.99973 * 2 1 4 4 C 1.50701 * 119.99940 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.46921 * 179.97438 * 4 2 1 6 6 C 1.46906 * 110.99793 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.46871 * 35.00433 * 6 5 4 8 8 C 1.53002 * 109.47092 * 155.00227 * 6 5 4 9 9 C 1.53004 * 109.47119 * 295.00039 * 8 6 5 10 10 C 1.50696 * 109.47273 * 179.97438 * 9 8 6 11 11 H 1.08008 * 119.99688 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99916 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00174 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99756 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47227 * 59.99966 * 14 12 10 16 16 H 1.48499 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46917 * 300.00002 * 14 12 10 18 18 C 1.50702 * 109.47191 * 274.99973 * 6 5 4 19 19 C 1.38229 * 119.99899 * 319.73247 * 18 6 5 20 20 C 1.38242 * 119.99794 * 179.78777 * 19 18 6 21 21 C 1.38236 * 119.99808 * 0.43793 * 20 19 18 22 22 C 1.38236 * 120.00036 * 359.81168 * 21 20 19 23 23 C 1.38235 * 119.99543 * 139.99923 * 18 6 5 24 24 H 1.08998 * 109.46932 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46865 * 299.99489 * 1 2 3 26 26 H 1.08993 * 109.47420 * 59.98988 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99670 * 4 2 1 28 28 H 1.09001 * 109.47380 * 59.99758 * 4 2 1 29 29 H 1.00898 * 110.99877 * 56.04636 * 5 4 2 30 30 H 1.08998 * 109.46846 * 54.99830 * 8 6 5 31 31 H 1.08995 * 109.47022 * 175.00292 * 8 6 5 32 32 H 1.08999 * 109.47179 * 300.00188 * 9 8 6 33 33 H 1.09004 * 109.46918 * 59.99924 * 9 8 6 34 34 H 0.97000 * 119.99663 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.00313 * 359.97438 * 19 18 6 36 36 H 1.08000 * 120.00004 * 180.26719 * 20 19 18 37 37 H 1.08005 * 120.00061 * 179.83506 * 21 20 19 38 38 H 1.08000 * 120.00095 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.00412 * 359.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7047 -1.0367 -0.0011 6 6 4.4729 -2.2889 -0.0010 7 1 3.9452 -3.0388 -0.5903 8 6 5.8538 -2.0400 -0.6111 9 6 5.6992 -1.6600 -2.0851 10 6 7.0593 -1.4143 -2.6859 11 1 7.9454 -1.5192 -2.0772 12 6 7.1725 -1.0568 -4.0126 13 7 6.0936 -0.9306 -4.7540 14 14 8.8584 -0.7529 -4.7574 15 1 9.6779 -1.9864 -4.6471 16 1 8.7084 -0.3840 -6.1880 17 1 9.5292 0.3538 -4.0290 18 6 4.6305 -2.7815 1.4144 19 6 4.8870 -1.8841 2.4340 20 6 5.0272 -2.3355 3.7331 21 6 4.9198 -3.6854 4.0111 22 6 4.6685 -4.5834 2.9906 23 6 4.5240 -4.1315 1.6922 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 1.9972 -1.8771 0.8892 28 1 1.9971 -1.8764 -0.8908 29 1 3.9644 -0.4535 0.7803 30 1 6.3463 -1.2280 -0.0763 31 1 6.4551 -2.9456 -0.5305 32 1 5.2067 -2.4721 -2.6200 33 1 5.0979 -0.7545 -2.1657 34 1 6.1733 -0.6786 -5.6873 35 1 4.9748 -0.8300 2.2163 36 1 5.2232 -1.6339 4.5304 37 1 5.0320 -4.0384 5.0256 38 1 4.5843 -5.6379 3.2079 39 1 4.3275 -4.8330 0.8950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639655003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:07 Heat of formation + Delta-G solvation = -21.725198 kcal Electronic energy + Delta-G solvation = -19131.494172 eV Core-core repulsion = 16231.615947 eV Total energy + Delta-G solvation = -2899.878225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74396 -38.98657 -36.22963 -33.24206 -31.84959 -30.87909 -30.25814 -30.20118 -26.81682 -24.85157 -23.37167 -22.41685 -20.93908 -19.95527 -19.31548 -17.17542 -16.15068 -15.82642 -15.67525 -15.32992 -14.98984 -14.67520 -14.37028 -13.95224 -13.72058 -13.29980 -13.07244 -12.87658 -12.54320 -12.38747 -12.12587 -11.88125 -11.83317 -11.56983 -11.13895 -10.94625 -10.80017 -10.56747 -10.39216 -9.65414 -9.45386 -9.35261 -8.96764 -8.87574 -8.47997 -8.22528 -8.02302 -5.85756 -3.86795 1.41945 1.44614 2.12191 3.41322 3.45230 3.48071 3.82962 3.98820 4.56877 4.64116 4.89679 4.94064 5.02622 5.04667 5.17647 5.24345 5.42558 5.47594 5.49729 5.52536 5.56765 5.61490 5.76308 5.87790 6.02253 6.08093 6.19957 6.50191 6.53168 6.59451 6.64468 6.86829 7.05297 7.25506 7.36756 7.63800 7.75654 7.85843 8.08578 8.25267 8.59431 9.21451 9.75628 11.25395 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.005840 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.367821 B = 4793.588543 C = 6352.641540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.350 3.650 3 O -0.442 6.442 4 C 0.007 3.993 5 N -0.656 5.656 6 C 0.125 3.875 7 H 0.083 0.917 8 C -0.091 4.091 9 C 0.030 3.970 10 C -0.518 4.518 11 H 0.050 0.950 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.343 0.657 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.008 0.992 33 H 0.034 0.966 34 H 0.258 0.742 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.388 -5.206 15.791 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.224 3.776 3 O -0.314 6.314 4 C -0.123 4.123 5 N -0.288 5.288 6 C 0.016 3.984 7 H 0.102 0.898 8 C -0.129 4.129 9 C -0.007 4.007 10 C -0.557 4.557 11 H 0.069 0.931 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.102 4.102 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.133 4.133 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.164 0.836 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.088 -4.493 14.908 18.553 hybrid contribution 0.770 -0.301 0.456 0.944 sum -9.318 -4.795 15.363 18.597 Atomic orbital electron populations 1.22234 0.94746 1.04361 1.04559 1.24636 0.91528 0.90426 0.71012 1.90431 1.71762 1.34782 1.34404 1.22469 0.90529 0.96611 1.02683 1.60470 1.01723 1.16074 1.50537 1.20914 0.97587 0.90373 0.89545 0.89847 1.21636 0.91276 0.99931 1.00043 1.19010 0.96577 0.97383 0.87729 1.21278 0.93155 1.46102 0.95160 0.93128 1.24981 0.96209 0.95789 0.97359 1.69964 1.27708 1.48548 1.07237 0.86735 0.85000 0.78590 0.78088 1.20424 1.21396 1.20353 1.21035 0.97807 0.93929 0.97413 1.21005 1.00307 0.99811 0.92687 1.21096 1.00250 0.95729 0.96507 1.21081 1.01430 0.93529 0.98965 1.21124 1.00208 0.99363 0.93101 1.21100 1.00415 0.95192 0.96612 0.90218 0.89418 0.89015 0.92475 0.87484 0.83629 0.93170 0.93206 0.97398 0.94732 0.93190 0.86054 0.86365 0.86534 0.86379 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 10.33 36.00 0.37 -1.41 16 2 C 0.35 4.68 7.30 -29.04 -0.21 4.47 16 3 O -0.44 -7.88 16.94 6.00 0.10 -7.78 16 4 C 0.01 0.09 5.81 -4.97 -0.03 0.06 16 5 N -0.66 -11.01 5.31 -109.21 -0.58 -11.59 16 6 C 0.13 2.11 2.22 -68.86 -0.15 1.95 16 7 H 0.08 1.38 7.66 -51.93 -0.40 0.98 16 8 C -0.09 -1.91 4.81 -26.73 -0.13 -2.04 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 11 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.77 13.29 55.43 0.74 -27.03 16 14 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C -0.10 -1.45 4.71 -104.63 -0.49 -1.94 16 19 C -0.12 -1.63 9.11 -39.58 -0.36 -2.00 16 20 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 21 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 23 C -0.11 -1.50 9.67 -39.58 -0.38 -1.88 16 24 H 0.08 0.52 8.00 -51.93 -0.42 0.11 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 28 H 0.11 1.36 8.06 -51.93 -0.42 0.94 16 29 H 0.34 5.60 6.06 -39.29 -0.24 5.36 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.03 1.00 7.75 -51.93 -0.40 0.60 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 35 H 0.12 1.64 6.53 -52.49 -0.34 1.30 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -33.88 330.96 -8.88 -42.76 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.98 Total: 2.74 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -3.13 Total: -21.47 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.16 Total: -38.62 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.10 Total: -7.78 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.88 -8.88 -42.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639655003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.032 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds