Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20758 * 119.99973 * 2 1 4 4 C 1.50701 * 119.99940 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.46921 * 179.97438 * 4 2 1 6 6 C 1.46906 * 110.99793 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.46871 * 35.00433 * 6 5 4 8 8 C 1.53002 * 109.47092 * 155.00227 * 6 5 4 9 9 C 1.53004 * 109.47119 * 295.00039 * 8 6 5 10 10 C 1.50696 * 109.47273 * 179.97438 * 9 8 6 11 11 H 1.08008 * 119.99688 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99916 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00174 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99756 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47227 * 59.99966 * 14 12 10 16 16 H 1.48499 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46917 * 300.00002 * 14 12 10 18 18 C 1.50702 * 109.47191 * 274.99973 * 6 5 4 19 19 C 1.38229 * 119.99899 * 319.73247 * 18 6 5 20 20 C 1.38242 * 119.99794 * 179.78777 * 19 18 6 21 21 C 1.38236 * 119.99808 * 0.43793 * 20 19 18 22 22 C 1.38236 * 120.00036 * 359.81168 * 21 20 19 23 23 C 1.38235 * 119.99543 * 139.99923 * 18 6 5 24 24 H 1.08998 * 109.46932 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46865 * 299.99489 * 1 2 3 26 26 H 1.08993 * 109.47420 * 59.98988 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99670 * 4 2 1 28 28 H 1.09001 * 109.47380 * 59.99758 * 4 2 1 29 29 H 1.00898 * 110.99877 * 56.04636 * 5 4 2 30 30 H 1.08998 * 109.46846 * 54.99830 * 8 6 5 31 31 H 1.08995 * 109.47022 * 175.00292 * 8 6 5 32 32 H 1.08999 * 109.47179 * 300.00188 * 9 8 6 33 33 H 1.09004 * 109.46918 * 59.99924 * 9 8 6 34 34 H 0.97000 * 119.99663 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.00313 * 359.97438 * 19 18 6 36 36 H 1.08000 * 120.00004 * 180.26719 * 20 19 18 37 37 H 1.08005 * 120.00061 * 179.83506 * 21 20 19 38 38 H 1.08000 * 120.00095 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.00412 * 359.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7047 -1.0367 -0.0011 6 6 4.4729 -2.2889 -0.0010 7 1 3.9452 -3.0388 -0.5903 8 6 5.8538 -2.0400 -0.6111 9 6 5.6992 -1.6600 -2.0851 10 6 7.0593 -1.4143 -2.6859 11 1 7.9454 -1.5192 -2.0772 12 6 7.1725 -1.0568 -4.0126 13 7 6.0936 -0.9306 -4.7540 14 14 8.8584 -0.7529 -4.7574 15 1 9.6779 -1.9864 -4.6471 16 1 8.7084 -0.3840 -6.1880 17 1 9.5292 0.3538 -4.0290 18 6 4.6305 -2.7815 1.4144 19 6 4.8870 -1.8841 2.4340 20 6 5.0272 -2.3355 3.7331 21 6 4.9198 -3.6854 4.0111 22 6 4.6685 -4.5834 2.9906 23 6 4.5240 -4.1315 1.6922 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 1.9972 -1.8771 0.8892 28 1 1.9971 -1.8764 -0.8908 29 1 3.9644 -0.4535 0.7803 30 1 6.3463 -1.2280 -0.0763 31 1 6.4551 -2.9456 -0.5305 32 1 5.2067 -2.4721 -2.6200 33 1 5.0979 -0.7545 -2.1657 34 1 6.1733 -0.6786 -5.6873 35 1 4.9748 -0.8300 2.2163 36 1 5.2232 -1.6339 4.5304 37 1 5.0320 -4.0384 5.0256 38 1 4.5843 -5.6379 3.2079 39 1 4.3275 -4.8330 0.8950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639655003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = -42.658595 kcal Electronic energy + Delta-G solvation = -19132.401912 eV Core-core repulsion = 16231.615947 eV Total energy + Delta-G solvation = -2900.785965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85409 -40.07481 -37.51604 -35.29725 -33.31757 -31.82920 -31.81642 -31.11827 -28.37208 -26.34649 -24.83811 -23.42060 -22.52589 -21.26188 -20.51767 -18.51841 -18.07034 -16.95729 -16.78215 -16.49328 -16.44723 -16.00020 -15.71245 -15.18642 -14.90628 -14.52321 -14.30566 -14.20028 -13.93992 -13.50941 -13.42651 -13.29996 -13.03131 -12.87683 -12.76265 -12.51577 -12.33833 -12.09896 -11.86476 -11.58652 -11.27826 -11.14558 -10.55869 -10.49353 -9.82091 -9.59790 -9.28661 -8.14549 -6.25022 0.44380 0.50332 1.06279 1.38623 1.42527 1.50091 2.43116 2.85281 2.96014 3.17748 3.48220 3.80169 3.94802 4.16194 4.22111 4.25758 4.30023 4.41302 4.53226 4.58618 4.65620 4.68632 4.69505 4.74328 4.87920 5.03796 5.10108 5.15126 5.17890 5.34904 5.55631 5.58910 5.62003 5.64042 5.84280 5.99584 6.12756 6.15110 6.32820 6.40925 6.68170 6.93543 7.42794 8.96676 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.005840 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.367821 B = 4793.588543 C = 6352.641540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.351 3.649 3 O -0.497 6.497 4 C 0.005 3.995 5 N -0.685 5.685 6 C 0.139 3.861 7 H 0.082 0.918 8 C -0.078 4.078 9 C 0.041 3.959 10 C -0.545 4.545 11 H 0.053 0.947 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.961 3.039 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.271 1.271 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.124 4.124 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.341 0.659 30 H 0.039 0.961 31 H 0.050 0.950 32 H -0.015 1.015 33 H 0.001 0.999 34 H 0.262 0.738 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 -6.569 17.564 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.229 3.771 3 O -0.373 6.373 4 C -0.124 4.124 5 N -0.317 5.317 6 C 0.029 3.971 7 H 0.100 0.900 8 C -0.116 4.116 9 C 0.004 3.996 10 C -0.583 4.583 11 H 0.071 0.929 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.786 3.214 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.116 4.116 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.137 4.137 23 C -0.143 4.143 24 H 0.127 0.873 25 H 0.122 0.878 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.162 0.838 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.003 0.997 33 H 0.019 0.981 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.189 -5.881 16.696 20.424 hybrid contribution 0.761 0.087 -0.051 0.767 sum -9.428 -5.795 16.645 19.988 Atomic orbital electron populations 1.22226 0.90687 1.06626 1.05366 1.25306 0.93706 0.89399 0.68718 1.90419 1.73252 1.36343 1.37292 1.22596 0.88511 0.97270 1.04049 1.60376 1.03963 1.16344 1.51027 1.20522 0.94854 0.90473 0.91228 0.90031 1.21392 0.94431 0.99271 0.96549 1.18798 0.94773 0.94895 0.91105 1.21746 0.94286 1.46384 0.95901 0.92863 1.25936 1.00657 0.95254 0.97867 1.70107 1.30267 1.49202 1.07633 0.85570 0.79670 0.78984 0.77218 1.19019 1.20679 1.19585 1.20726 1.00197 0.94884 0.95823 1.21051 1.01138 0.99381 0.93620 1.21376 0.99587 0.96861 0.96088 1.21487 0.99597 0.92971 1.00409 1.21461 0.98991 1.00952 0.92262 1.21267 1.00555 0.94524 0.97915 0.87298 0.87800 0.88699 0.89672 0.87088 0.83770 0.94177 0.93170 0.99697 0.98097 0.92974 0.86995 0.84307 0.83486 0.83639 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 10.33 71.24 0.74 -2.32 16 2 C 0.35 9.42 7.30 29.10 0.21 9.63 16 3 O -0.50 -18.48 16.94 -1.45 -0.02 -18.50 16 4 C 0.00 0.13 5.81 85.56 0.50 0.63 16 5 N -0.68 -23.99 5.31 -499.43 -2.65 -26.65 16 6 C 0.14 4.81 2.22 44.17 0.10 4.91 16 7 H 0.08 2.79 7.66 -2.39 -0.02 2.77 16 8 C -0.08 -3.44 4.81 30.60 0.15 -3.30 16 9 C 0.04 2.31 4.86 29.85 0.15 2.46 16 10 C -0.55 -32.91 9.11 25.60 0.23 -32.67 16 11 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 12 C 0.00 0.02 5.46 84.65 0.46 0.48 16 13 N -0.93 -59.33 13.29 21.45 0.28 -59.05 16 14 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 C -0.11 -3.27 4.71 -19.87 -0.09 -3.37 16 19 C -0.13 -3.58 9.11 22.27 0.20 -3.37 16 20 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 21 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 22 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 23 C -0.12 -3.04 9.67 22.27 0.22 -2.82 16 24 H 0.11 1.10 8.00 -2.39 -0.02 1.08 16 25 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.79 8.00 -2.39 -0.02 1.77 16 28 H 0.11 2.83 8.06 -2.39 -0.02 2.81 16 29 H 0.34 11.78 6.06 -89.70 -0.54 11.24 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.00 0.04 7.75 -2.39 -0.02 0.02 16 34 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.11 3.13 6.53 -2.91 -0.02 3.11 16 36 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.13 2.88 8.04 -2.91 -0.02 2.86 16 Total: -1.00 -76.11 330.96 3.64 -72.47 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.48 Total: 19.71 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.53 Total: -36.42 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.37 Total: -85.69 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.02 Total: -18.50 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -76.11 3.64 -72.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639655003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.815 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds